Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110176824-110704585

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21033 8 110183990 to 110184227 237 CpG island CpG island 21033
Cmtr2 8 110215665 to 110224486 8821 + protein coding gene cap methyltransferase 2
Cpgi21034 8 110217612 to 110218201 589 CpG island CpG island 21034
Tssr79413 8 110217948 to 110218004 56 + TSS region transcription start site region 79413
Gm39249 8 110255042 to 110260549 5507 - lncRNA gene predicted gene, 39249
Gm26832 8 110265248 to 110267462 2214 - antisense lncRNA gene predicted gene, 26832
Tssr79414 8 110266950 to 110266955 5 + TSS region transcription start site region 79414
Tssr79415 8 110266960 to 110266982 22 + TSS region transcription start site region 79415
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Cpgi21035 8 110290786 to 110291226 440 CpG island CpG island 21035
Cpgi21036 8 110365452 to 110365676 224 CpG island CpG island 21036
Gm23627 8 110421361 to 110421467 106 - snRNA gene predicted gene, 23627
Gm35676 8 110436824 to 110444585 7761 - lncRNA gene predicted gene, 35676
Tpnr6 8 110440000 to 114230000 3790000 QTL thermal pain response 6
Tssr82871 8 110444381 to 110444397 16 - TSS region transcription start site region 82871
Tssr79416 8 110444470 to 110444501 31 + TSS region transcription start site region 79416
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)
Tssr79420 8 110703236 to 110703243 7 + TSS region transcription start site region 79420
Tssr79421 8 110703721 to 110703734 13 + TSS region transcription start site region 79421