Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110116977-110760253

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35543 8 110113773 to 110132468 18695 + lncRNA gene predicted gene, 35543
Tssr79408 8 110117625 to 110117628 3 + TSS region transcription start site region 79408
Tssr79409 8 110117660 to 110117672 12 + TSS region transcription start site region 79409
Tssr79410 8 110122594 to 110122598 4 + TSS region transcription start site region 79410
Tssr79411 8 110126406 to 110126435 29 + TSS region transcription start site region 79411
Tssr79412 8 110126488 to 110126507 19 + TSS region transcription start site region 79412
Calb2 8 110142538 to 110168206 25668 - protein coding gene calbindin 2
Tssr82867 8 110142719 to 110142762 43 - TSS region transcription start site region 82867
Tssr82868 8 110142991 to 110143002 11 - TSS region transcription start site region 82868
Tssr82869 8 110161365 to 110161366 1 - TSS region transcription start site region 82869
Cpgi21032 8 110167835 to 110168639 804 CpG island CpG island 21032
Tssr82870 8 110168204 to 110168221 17 - TSS region transcription start site region 82870
Cpgi21033 8 110183990 to 110184227 237 CpG island CpG island 21033
Cmtr2 8 110215665 to 110224486 8821 + protein coding gene cap methyltransferase 2
Cpgi21034 8 110217612 to 110218201 589 CpG island CpG island 21034
Tssr79413 8 110217948 to 110218004 56 + TSS region transcription start site region 79413
Gm39249 8 110255042 to 110260549 5507 - lncRNA gene predicted gene, 39249
Gm26832 8 110265248 to 110267462 2214 - antisense lncRNA gene predicted gene, 26832
Tssr79414 8 110266950 to 110266955 5 + TSS region transcription start site region 79414
Tssr79415 8 110266960 to 110266982 22 + TSS region transcription start site region 79415
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Cpgi21035 8 110290786 to 110291226 440 CpG island CpG island 21035
Cpgi21036 8 110365452 to 110365676 224 CpG island CpG island 21036
Gm23627 8 110421361 to 110421467 106 - snRNA gene predicted gene, 23627
Gm35676 8 110436824 to 110444585 7761 - lncRNA gene predicted gene, 35676
Tpnr6 8 110440000 to 114230000 3790000 QTL thermal pain response 6
Tssr82871 8 110444381 to 110444397 16 - TSS region transcription start site region 82871
Tssr79416 8 110444470 to 110444501 31 + TSS region transcription start site region 79416
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)
Tssr79420 8 110703236 to 110703243 7 + TSS region transcription start site region 79420
Tssr79421 8 110703721 to 110703734 13 + TSS region transcription start site region 79421
Tssr79422 8 110715118 to 110715129 11 + TSS region transcription start site region 79422
Cpgi21038 8 110720646 to 110722535 1889 CpG island CpG island 21038
Tssr79423 8 110721422 to 110721444 22 + TSS region transcription start site region 79423
Tssr79424 8 110721451 to 110721456 5 + TSS region transcription start site region 79424
Tssr79425 8 110721462 to 110721486 24 + TSS region transcription start site region 79425
Mtss2 8 110721476 to 110741400 19924 + protein coding gene MTSS I-BAR domain containing 2
Tssr79426 8 110721496 to 110721504 8 + TSS region transcription start site region 79426
Tssr79427 8 110721655 to 110721724 69 + TSS region transcription start site region 79427
Cpgi21039 8 110727005 to 110727583 578 CpG island CpG island 21039
Tssr79428 8 110727110 to 110727131 21 + TSS region transcription start site region 79428
Tssr79429 8 110728832 to 110728854 22 + TSS region transcription start site region 79429
Tssr79430 8 110730055 to 110730076 21 + TSS region transcription start site region 79430
Tssr79431 8 110732121 to 110732134 13 + TSS region transcription start site region 79431
Tssr79432 8 110737933 to 110737948 15 + TSS region transcription start site region 79432
Cpgi21040 8 110738328 to 110739303 975 CpG island CpG island 21040
Tssr2686 8 110738559 to 110738577 18 + TSS region transcription start site region 2686
Tssr79433 8 110740925 to 110740933 8 + TSS region transcription start site region 79433
Tssr79434 8 110741057 to 110741071 14 + TSS region transcription start site region 79434
Tssr79435 8 110741186 to 110741205 19 + TSS region transcription start site region 79435
Il34 8 110741829 to 110805924 64095 - protein coding gene interleukin 34
Cpgi21041 8 110748175 to 110748449 274 CpG island CpG island 21041
Tssr79436 8 110754989 to 110755004 15 + TSS region transcription start site region 79436
Tssr82879 8 110755583 to 110755595 12 - TSS region transcription start site region 82879
Tssr82880 8 110755606 to 110755664 58 - TSS region transcription start site region 82880
Gm15894 8 110755841 to 110758972 3131 + antisense lncRNA gene predicted gene 15894