Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110035452-110695676

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chst4 8 110029075 to 110039374 10299 - protein coding gene carbohydrate sulfotransferase 4
Tssr82864 8 110039330 to 110039350 20 - TSS region transcription start site region 82864
Tssr82865 8 110039351 to 110039362 11 - TSS region transcription start site region 82865
Tssr82866 8 110039371 to 110039396 25 - TSS region transcription start site region 82866
Tssr79401 8 110039449 to 110039478 29 + TSS region transcription start site region 79401
8030455M16Rik 8 110047432 to 110057176 9744 + lincRNA gene RIKEN cDNA 8030455M16 gene
Cpgi21030 8 110079439 to 110080165 726 CpG island CpG island 21030
Tssr79402 8 110079710 to 110079756 46 + TSS region transcription start site region 79402
Zfp612 8 110079746 to 110092741 12995 + protein coding gene zinc finger protein 612
Tssr79403 8 110079758 to 110079774 16 + TSS region transcription start site region 79403
Gm17720 8 110082803 to 110102753 19950 - protein coding gene predicted gene, 17720
Tssr79404 8 110089997 to 110090009 12 + TSS region transcription start site region 79404
Tssr79405 8 110090025 to 110090045 20 + TSS region transcription start site region 79405
Tssr79406 8 110090111 to 110090141 30 + TSS region transcription start site region 79406
Tssr79407 8 110090145 to 110090155 10 + TSS region transcription start site region 79407
Tle7 8 110101332 to 110111930 10598 + protein coding gene TLE family member 7
Cpgi21031 8 110101922 to 110102130 208 CpG island CpG island 21031
Gm35543 8 110113773 to 110132468 18695 + lncRNA gene predicted gene, 35543
Tssr79408 8 110117625 to 110117628 3 + TSS region transcription start site region 79408
Tssr79409 8 110117660 to 110117672 12 + TSS region transcription start site region 79409
Tssr79410 8 110122594 to 110122598 4 + TSS region transcription start site region 79410
Tssr79411 8 110126406 to 110126435 29 + TSS region transcription start site region 79411
Tssr79412 8 110126488 to 110126507 19 + TSS region transcription start site region 79412
Calb2 8 110142538 to 110168206 25668 - protein coding gene calbindin 2
Tssr82867 8 110142719 to 110142762 43 - TSS region transcription start site region 82867
Tssr82868 8 110142991 to 110143002 11 - TSS region transcription start site region 82868
Tssr82869 8 110161365 to 110161366 1 - TSS region transcription start site region 82869
Cpgi21032 8 110167835 to 110168639 804 CpG island CpG island 21032
Tssr82870 8 110168204 to 110168221 17 - TSS region transcription start site region 82870
Cpgi21033 8 110183990 to 110184227 237 CpG island CpG island 21033
Cmtr2 8 110215665 to 110224486 8821 + protein coding gene cap methyltransferase 2
Cpgi21034 8 110217612 to 110218201 589 CpG island CpG island 21034
Tssr79413 8 110217948 to 110218004 56 + TSS region transcription start site region 79413
Gm39249 8 110255042 to 110260549 5507 - lncRNA gene predicted gene, 39249
Gm26832 8 110265248 to 110267462 2214 - antisense lncRNA gene predicted gene, 26832
Tssr79414 8 110266950 to 110266955 5 + TSS region transcription start site region 79414
Tssr79415 8 110266960 to 110266982 22 + TSS region transcription start site region 79415
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Cpgi21035 8 110290786 to 110291226 440 CpG island CpG island 21035
Cpgi21036 8 110365452 to 110365676 224 CpG island CpG island 21036
Gm23627 8 110421361 to 110421467 106 - snRNA gene predicted gene, 23627
Gm35676 8 110436824 to 110444585 7761 - lncRNA gene predicted gene, 35676
Tpnr6 8 110440000 to 114230000 3790000 QTL thermal pain response 6
Tssr82871 8 110444381 to 110444397 16 - TSS region transcription start site region 82871
Tssr79416 8 110444470 to 110444501 31 + TSS region transcription start site region 79416
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)