Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:109995452-110735676

Filter by:
103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tat 8 109990437 to 109999803 9366 + protein coding gene tyrosine aminotransferase
Tssr79386 8 109996084 to 109996117 33 + TSS region transcription start site region 79386
Tssr79387 8 109997540 to 109997552 12 + TSS region transcription start site region 79387
Tssr79388 8 109997572 to 109997576 4 + TSS region transcription start site region 79388
Tssr79389 8 109998350 to 109998361 11 + TSS region transcription start site region 79389
Tssr79390 8 109998771 to 109998786 15 + TSS region transcription start site region 79390
Tssr79391 8 109998792 to 109998823 31 + TSS region transcription start site region 79391
Tssr79392 8 109998826 to 109998842 16 + TSS region transcription start site region 79392
Tssr79393 8 109998889 to 109998894 5 + TSS region transcription start site region 79393
Tssr79394 8 109998911 to 109998919 8 + TSS region transcription start site region 79394
Tssr79395 8 109998926 to 109998941 15 + TSS region transcription start site region 79395
Tssr79396 8 109998949 to 109998958 9 + TSS region transcription start site region 79396
Tssr79397 8 109999003 to 109999025 22 + TSS region transcription start site region 79397
Tssr79398 8 109999247 to 109999261 14 + TSS region transcription start site region 79398
Tssr79399 8 109999301 to 109999310 9 + TSS region transcription start site region 79399
Tssr79400 8 109999350 to 109999364 14 + TSS region transcription start site region 79400
1700064F23Rik 8 110006525 to 110007526 1001 + lncRNA gene RIKEN cDNA 1700064F23 gene
Cpgi21026 8 110008107 to 110008444 337 CpG island CpG island 21026
Gm45888 8 110011375 to 110014324 2949 - pseudogene predicted gene 45888
Cpgi21027 8 110013641 to 110013817 176 CpG island CpG island 21027
Cpgi21028 8 110021397 to 110021591 194 CpG island CpG island 21028
Chst4 8 110029075 to 110039374 10299 - protein coding gene carbohydrate sulfotransferase 4
Cpgi21029 8 110029980 to 110030584 604 CpG island CpG island 21029
Tssr82864 8 110039330 to 110039350 20 - TSS region transcription start site region 82864
Tssr82865 8 110039351 to 110039362 11 - TSS region transcription start site region 82865
Tssr82866 8 110039371 to 110039396 25 - TSS region transcription start site region 82866
Tssr79401 8 110039449 to 110039478 29 + TSS region transcription start site region 79401
8030455M16Rik 8 110047432 to 110057176 9744 + lincRNA gene RIKEN cDNA 8030455M16 gene
Cpgi21030 8 110079439 to 110080165 726 CpG island CpG island 21030
Tssr79402 8 110079710 to 110079756 46 + TSS region transcription start site region 79402
Zfp612 8 110079746 to 110092741 12995 + protein coding gene zinc finger protein 612
Tssr79403 8 110079758 to 110079774 16 + TSS region transcription start site region 79403
Gm17720 8 110082803 to 110102753 19950 - protein coding gene predicted gene, 17720
Tssr79404 8 110089997 to 110090009 12 + TSS region transcription start site region 79404
Tssr79405 8 110090025 to 110090045 20 + TSS region transcription start site region 79405
Tssr79406 8 110090111 to 110090141 30 + TSS region transcription start site region 79406
Tssr79407 8 110090145 to 110090155 10 + TSS region transcription start site region 79407
Tle7 8 110101332 to 110111930 10598 + protein coding gene TLE family member 7
Cpgi21031 8 110101922 to 110102130 208 CpG island CpG island 21031
Gm35543 8 110113773 to 110132468 18695 + lncRNA gene predicted gene, 35543
Tssr79408 8 110117625 to 110117628 3 + TSS region transcription start site region 79408
Tssr79409 8 110117660 to 110117672 12 + TSS region transcription start site region 79409
Tssr79410 8 110122594 to 110122598 4 + TSS region transcription start site region 79410
Tssr79411 8 110126406 to 110126435 29 + TSS region transcription start site region 79411
Tssr79412 8 110126488 to 110126507 19 + TSS region transcription start site region 79412
Calb2 8 110142538 to 110168206 25668 - protein coding gene calbindin 2
Tssr82867 8 110142719 to 110142762 43 - TSS region transcription start site region 82867
Tssr82868 8 110142991 to 110143002 11 - TSS region transcription start site region 82868
Tssr82869 8 110161365 to 110161366 1 - TSS region transcription start site region 82869
Cpgi21032 8 110167835 to 110168639 804 CpG island CpG island 21032
Tssr82870 8 110168204 to 110168221 17 - TSS region transcription start site region 82870
Cpgi21033 8 110183990 to 110184227 237 CpG island CpG island 21033
Cmtr2 8 110215665 to 110224486 8821 + protein coding gene cap methyltransferase 2
Cpgi21034 8 110217612 to 110218201 589 CpG island CpG island 21034
Tssr79413 8 110217948 to 110218004 56 + TSS region transcription start site region 79413
Gm39249 8 110255042 to 110260549 5507 - lncRNA gene predicted gene, 39249
Gm26832 8 110265248 to 110267462 2214 - antisense lncRNA gene predicted gene, 26832
Tssr79414 8 110266950 to 110266955 5 + TSS region transcription start site region 79414
Tssr79415 8 110266960 to 110266982 22 + TSS region transcription start site region 79415
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Cpgi21035 8 110290786 to 110291226 440 CpG island CpG island 21035
Cpgi21036 8 110365452 to 110365676 224 CpG island CpG island 21036
Gm23627 8 110421361 to 110421467 106 - snRNA gene predicted gene, 23627
Gm35676 8 110436824 to 110444585 7761 - lncRNA gene predicted gene, 35676
Tpnr6 8 110440000 to 114230000 3790000 QTL thermal pain response 6
Tssr82871 8 110444381 to 110444397 16 - TSS region transcription start site region 82871
Tssr79416 8 110444470 to 110444501 31 + TSS region transcription start site region 79416
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)
Tssr79420 8 110703236 to 110703243 7 + TSS region transcription start site region 79420
Tssr79421 8 110703721 to 110703734 13 + TSS region transcription start site region 79421
Tssr79422 8 110715118 to 110715129 11 + TSS region transcription start site region 79422
Cpgi21038 8 110720646 to 110722535 1889 CpG island CpG island 21038
Tssr79423 8 110721422 to 110721444 22 + TSS region transcription start site region 79423
Tssr79424 8 110721451 to 110721456 5 + TSS region transcription start site region 79424
Tssr79425 8 110721462 to 110721486 24 + TSS region transcription start site region 79425
Mtss2 8 110721476 to 110741400 19924 + protein coding gene MTSS I-BAR domain containing 2
Tssr79426 8 110721496 to 110721504 8 + TSS region transcription start site region 79426
Tssr79427 8 110721655 to 110721724 69 + TSS region transcription start site region 79427
Cpgi21039 8 110727005 to 110727583 578 CpG island CpG island 21039
Tssr79428 8 110727110 to 110727131 21 + TSS region transcription start site region 79428
Tssr79429 8 110728832 to 110728854 22 + TSS region transcription start site region 79429
Tssr79430 8 110730055 to 110730076 21 + TSS region transcription start site region 79430
Tssr79431 8 110732121 to 110732134 13 + TSS region transcription start site region 79431