Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:109672538-110638206

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkd1l3 8 109613993 to 109672592 58599 + protein coding gene polycystic kidney disease 1 like 3
Ist1 8 109671325 to 109693260 21935 - protein coding gene increased sodium tolerance 1 homolog (yeast)
Tssr82853 8 109682193 to 109682208 15 - TSS region transcription start site region 82853
Cpgi21018 8 109692691 to 109693794 1103 CpG island CpG island 21018
Tssr82854 8 109693202 to 109693211 9 - TSS region transcription start site region 82854
Tssr82855 8 109693215 to 109693226 11 - TSS region transcription start site region 82855
Tssr82856 8 109693235 to 109693289 54 - TSS region transcription start site region 82856
Tssr79363 8 109693444 to 109693460 16 + TSS region transcription start site region 79363
Cpgi21019 8 109704918 to 109706493 1575 CpG island CpG island 21019
Tssr79364 8 109705501 to 109705519 18 + TSS region transcription start site region 79364
Zfp821 8 109705546 to 109724932 19386 + protein coding gene zinc finger protein 821
Tssr79365 8 109705578 to 109705636 58 + TSS region transcription start site region 79365
Tssr79366 8 109705640 to 109705666 26 + TSS region transcription start site region 79366
Gm39248 8 109710048 to 109713503 3455 - lncRNA gene predicted gene, 39248
Atxn1l 8 109726451 to 109737739 11288 - protein coding gene ataxin 1-like
Cpgi21020 8 109737099 to 109737927 828 CpG island CpG island 21020
Tssr82857 8 109737714 to 109737786 72 - TSS region transcription start site region 82857
Gm8970 8 109751037 to 109751952 915 - pseudogene predicted gene 8970
Tssr82858 8 109752249 to 109752267 18 - TSS region transcription start site region 82858
Cpgi21021 8 109778353 to 109779613 1260 CpG island CpG island 21021
Tssr79367 8 109778555 to 109778558 3 + TSS region transcription start site region 79367
Tssr79368 8 109778566 to 109778577 11 + TSS region transcription start site region 79368
Ap1g1 8 109778583 to 109864210 85627 + protein coding gene adaptor protein complex AP-1, gamma 1 subunit
Tssr79369 8 109778591 to 109778651 60 + TSS region transcription start site region 79369
Tssr79370 8 109778654 to 109778678 24 + TSS region transcription start site region 79370
Tssr79371 8 109778850 to 109778861 11 + TSS region transcription start site region 79371
Tssr79372 8 109778863 to 109778921 58 + TSS region transcription start site region 79372
Tssr79373 8 109781512 to 109781515 3 + TSS region transcription start site region 79373
D14Sfk6 8 109792460 to 109792644 184 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 6
Tssr79374 8 109830480 to 109830484 4 + TSS region transcription start site region 79374
Tssr79375 8 109838768 to 109838782 14 + TSS region transcription start site region 79375
Snord71 8 109839312 to 109839375 63 + snoRNA gene small nucleolar RNA, C/D box 71
Gm25321 8 109840588 to 109840689 101 - snRNA gene predicted gene, 25321
A230107O07Rik 8 109845572 to 109847163 1591 unclassified gene RIKEN cDNA A230107O07 gene
D8Mit1009a 8 109854460 to 109854621 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009a
D8Mit1009b 8 109854488 to 109854621 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009b
D8Mit1010 8 109854562 to 109854689 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1010
Tssr79376 8 109855003 to 109855017 14 + TSS region transcription start site region 79376
Gm17344 8 109859984 to 109868455 8471 - antisense lncRNA gene predicted gene, 17344
Tssr79377 8 109860262 to 109860281 19 + TSS region transcription start site region 79377
Cpgi21022 8 109868099 to 109869595 1496 CpG island CpG island 21022
Tssr82859 8 109868421 to 109868439 18 - TSS region transcription start site region 82859
Tssr79378 8 109868531 to 109868584 53 + TSS region transcription start site region 79378
Phlpp2 8 109868542 to 109944671 76129 + protein coding gene PH domain and leucine rich repeat protein phosphatase 2
Tssr79379 8 109868586 to 109868609 23 + TSS region transcription start site region 79379
D8Mit269 8 109877669 to 109877793 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 269
Gm16349 8 109925388 to 109933663 8275 + unclassified non-coding RNA gene predicted gene 16349
D14Sfk4 8 109932219 to 109932470 251 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 4
Marveld3 8 109947914 to 109962203 14289 - protein coding gene MARVEL (membrane-associating) domain containing 3
Cpgi21023 8 109948016 to 109948655 639 CpG island CpG island 21023
Cpgi21024 8 109961639 to 109962434 795 CpG island CpG island 21024
Tssr82860 8 109961911 to 109961933 22 - TSS region transcription start site region 82860
Tssr2685 8 109962071 to 109962080 9 - TSS region transcription start site region 2685
Tssr82861 8 109962084 to 109962126 42 - TSS region transcription start site region 82861
Tssr82862 8 109962127 to 109962213 86 - TSS region transcription start site region 82862
Cpgi21025 8 109969162 to 109969558 396 CpG island CpG island 21025
Gm45795 8 109973953 to 109974352 399 - pseudogene predicted gene 45795
2010109N18Rik 8 109986051 to 109986755 704 unclassified gene RIKEN cDNA 2010109N18 gene
Tssr79380 8 109986650 to 109986676 26 + TSS region transcription start site region 79380
Tssr79381 8 109990430 to 109990447 17 + TSS region transcription start site region 79381
Tat 8 109990437 to 109999803 9366 + protein coding gene tyrosine aminotransferase
Tssr79382 8 109991557 to 109991568 11 + TSS region transcription start site region 79382
Tssr79383 8 109991680 to 109991687 7 + TSS region transcription start site region 79383
Tssr82863 8 109991900 to 109991916 16 - TSS region transcription start site region 82863
Tssr79384 8 109992599 to 109992610 11 + TSS region transcription start site region 79384
Tssr79385 8 109993916 to 109993928 12 + TSS region transcription start site region 79385
Tssr79386 8 109996084 to 109996117 33 + TSS region transcription start site region 79386
Tssr79387 8 109997540 to 109997552 12 + TSS region transcription start site region 79387
Tssr79388 8 109997572 to 109997576 4 + TSS region transcription start site region 79388
Tssr79389 8 109998350 to 109998361 11 + TSS region transcription start site region 79389
Tssr79390 8 109998771 to 109998786 15 + TSS region transcription start site region 79390
Tssr79391 8 109998792 to 109998823 31 + TSS region transcription start site region 79391
Tssr79392 8 109998826 to 109998842 16 + TSS region transcription start site region 79392
Tssr79393 8 109998889 to 109998894 5 + TSS region transcription start site region 79393
Tssr79394 8 109998911 to 109998919 8 + TSS region transcription start site region 79394
Tssr79395 8 109998926 to 109998941 15 + TSS region transcription start site region 79395
Tssr79396 8 109998949 to 109998958 9 + TSS region transcription start site region 79396
Tssr79397 8 109999003 to 109999025 22 + TSS region transcription start site region 79397
Tssr79398 8 109999247 to 109999261 14 + TSS region transcription start site region 79398
Tssr79399 8 109999301 to 109999310 9 + TSS region transcription start site region 79399
Tssr79400 8 109999350 to 109999364 14 + TSS region transcription start site region 79400
1700064F23Rik 8 110006525 to 110007526 1001 + lncRNA gene RIKEN cDNA 1700064F23 gene
Cpgi21026 8 110008107 to 110008444 337 CpG island CpG island 21026
Gm45888 8 110011375 to 110014324 2949 - pseudogene predicted gene 45888
Cpgi21027 8 110013641 to 110013817 176 CpG island CpG island 21027
Cpgi21028 8 110021397 to 110021591 194 CpG island CpG island 21028
Chst4 8 110029075 to 110039374 10299 - protein coding gene carbohydrate sulfotransferase 4
Cpgi21029 8 110029980 to 110030584 604 CpG island CpG island 21029
Tssr82864 8 110039330 to 110039350 20 - TSS region transcription start site region 82864
Tssr82865 8 110039351 to 110039362 11 - TSS region transcription start site region 82865
Tssr82866 8 110039371 to 110039396 25 - TSS region transcription start site region 82866
Tssr79401 8 110039449 to 110039478 29 + TSS region transcription start site region 79401
8030455M16Rik 8 110047432 to 110057176 9744 + lincRNA gene RIKEN cDNA 8030455M16 gene
Cpgi21030 8 110079439 to 110080165 726 CpG island CpG island 21030
Tssr79402 8 110079710 to 110079756 46 + TSS region transcription start site region 79402
Zfp612 8 110079746 to 110092741 12995 + protein coding gene zinc finger protein 612
Tssr79403 8 110079758 to 110079774 16 + TSS region transcription start site region 79403
Gm17720 8 110082803 to 110102753 19950 - protein coding gene predicted gene, 17720
Tssr79404 8 110089997 to 110090009 12 + TSS region transcription start site region 79404
Tssr79405 8 110090025 to 110090045 20 + TSS region transcription start site region 79405
Tssr79406 8 110090111 to 110090141 30 + TSS region transcription start site region 79406
Tssr79407 8 110090145 to 110090155 10 + TSS region transcription start site region 79407
Tle7 8 110101332 to 110111930 10598 + protein coding gene TLE family member 7
Cpgi21031 8 110101922 to 110102130 208 CpG island CpG island 21031
Gm35543 8 110113773 to 110132468 18695 + lncRNA gene predicted gene, 35543
Tssr79408 8 110117625 to 110117628 3 + TSS region transcription start site region 79408
Tssr79409 8 110117660 to 110117672 12 + TSS region transcription start site region 79409
Tssr79410 8 110122594 to 110122598 4 + TSS region transcription start site region 79410
Tssr79411 8 110126406 to 110126435 29 + TSS region transcription start site region 79411
Tssr79412 8 110126488 to 110126507 19 + TSS region transcription start site region 79412
Calb2 8 110142538 to 110168206 25668 - protein coding gene calbindin 2
Tssr82867 8 110142719 to 110142762 43 - TSS region transcription start site region 82867
Tssr82868 8 110142991 to 110143002 11 - TSS region transcription start site region 82868
Tssr82869 8 110161365 to 110161366 1 - TSS region transcription start site region 82869
Cpgi21032 8 110167835 to 110168639 804 CpG island CpG island 21032
Tssr82870 8 110168204 to 110168221 17 - TSS region transcription start site region 82870
Cpgi21033 8 110183990 to 110184227 237 CpG island CpG island 21033
Cmtr2 8 110215665 to 110224486 8821 + protein coding gene cap methyltransferase 2
Cpgi21034 8 110217612 to 110218201 589 CpG island CpG island 21034
Tssr79413 8 110217948 to 110218004 56 + TSS region transcription start site region 79413
Gm39249 8 110255042 to 110260549 5507 - lncRNA gene predicted gene, 39249
Gm26832 8 110265248 to 110267462 2214 - antisense lncRNA gene predicted gene, 26832
Tssr79414 8 110266950 to 110266955 5 + TSS region transcription start site region 79414
Tssr79415 8 110266960 to 110266982 22 + TSS region transcription start site region 79415
Hydin 8 110266977 to 110610253 343276 + protein coding gene HYDIN, axonemal central pair apparatus protein
Cpgi21035 8 110290786 to 110291226 440 CpG island CpG island 21035
Cpgi21036 8 110365452 to 110365676 224 CpG island CpG island 21036
Gm23627 8 110421361 to 110421467 106 - snRNA gene predicted gene, 23627
Gm35676 8 110436824 to 110444585 7761 - lncRNA gene predicted gene, 35676
Tpnr6 8 110440000 to 114230000 3790000 QTL thermal pain response 6
Tssr82871 8 110444381 to 110444397 16 - TSS region transcription start site region 82871
Tssr79416 8 110444470 to 110444501 31 + TSS region transcription start site region 79416
Tssr82872 8 110489814 to 110489817 3 - TSS region transcription start site region 82872
Gm21283 8 110495366 to 110502356 6990 - lncRNA gene predicted gene, 21283
Gm22701 8 110498852 to 110499142 290 + unclassified non-coding RNA gene predicted gene, 22701
Gm47306 8 110498985 to 110499044 59 + miRNA gene predicted gene, 47306
Tssr82873 8 110502348 to 110502361 13 - TSS region transcription start site region 82873
Tssr82874 8 110503048 to 110503067 19 - TSS region transcription start site region 82874
Tssr82875 8 110503072 to 110503080 8 - TSS region transcription start site region 82875
D8Dcr40 8 110518690 to 110518791 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 40
Tssr82876 8 110521936 to 110521952 16 - TSS region transcription start site region 82876
Tssr82877 8 110522131 to 110522158 27 - TSS region transcription start site region 82877
Tssr82878 8 110522170 to 110522188 18 - TSS region transcription start site region 82878
Tssr79417 8 110522384 to 110522387 3 + TSS region transcription start site region 79417
Gm44489 8 110556766 to 110556862 96 - miRNA gene predicted gene, 44489
D8Mit213 8 110565339 to 110565515 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 213
D8Mit151 8 110591723 to 110591965 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 151
Cpgi21037 8 110618381 to 110619264 883 CpG island CpG island 21037
Tssr79418 8 110618577 to 110618619 42 + TSS region transcription start site region 79418
Vac14 8 110618585 to 110720398 101813 + protein coding gene Vac14 homolog (S. cerevisiae)
Tssr79419 8 110618673 to 110618693 20 + TSS region transcription start site region 79419
n-TGgcc11 8 110630553 to 110630623 70 - tRNA gene nuclear encoded tRNA glycine 11 (anticodon GCC)
n-TGgcc10 8 110631246 to 110631316 70 - tRNA gene nuclear encoded tRNA glycine 10 (anticodon GCC)