Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:109110691-109570864

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D030068K23Rik 8 109075222 to 109253639 178417 + lincRNA gene RIKEN cDNA D030068K23 gene
4922502B01Rik 8 109145219 to 109249862 104643 - lncRNA gene RIKEN cDNA 4922502B01 gene
A730093L10Rik 8 109180754 to 109185633 4879 unclassified non-coding RNA gene RIKEN cDNA A730093L10 gene
Tssr79353 8 109247310 to 109247314 4 + TSS region transcription start site region 79353
Tssr82822 8 109251395 to 109251407 12 - TSS region transcription start site region 82822
Tssr82823 8 109251419 to 109251436 17 - TSS region transcription start site region 82823
Tssr82824 8 109251478 to 109251491 13 - TSS region transcription start site region 82824
Tssr82825 8 109251698 to 109251713 15 - TSS region transcription start site region 82825
Gm1943 8 109340691 to 109340864 173 - pseudogene predicted gene 1943
Tssr82826 8 109340860 to 109340872 12 - TSS region transcription start site region 82826
Cpgi21012 8 109353001 to 109353281 280 CpG island CpG island 21012
Tssr79354 8 109377842 to 109377868 26 + TSS region transcription start site region 79354
Cpgi21013 8 109414128 to 109414409 281 CpG island CpG island 21013
Gm23163 8 109425644 to 109425744 100 - miRNA gene predicted gene, 23163
Gm35145 8 109447209 to 109462969 15760 - lncRNA gene predicted gene, 35145
Cpgi21014 8 109458717 to 109458904 187 CpG island CpG island 21014
Gm39246 8 109467860 to 109493962 26102 - lncRNA gene predicted gene, 39246
Cpgi21015 8 109484060 to 109484229 169 CpG island CpG island 21015
Tssr79355 8 109493982 to 109494026 44 + TSS region transcription start site region 79355
Pmfbp1 8 109494027 to 109542640 48613 + protein coding gene polyamine modulated factor 1 binding protein 1
Tssr2684 8 109494028 to 109494033 5 + TSS region transcription start site region 2684
Tssr79356 8 109494196 to 109494209 13 + TSS region transcription start site region 79356
8430428J23Rik 8 109545280 to 109547261 1981 unclassified gene RIKEN cDNA 8430428J23 gene
Dhx38 8 109548011 to 109565861 17850 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 38
Cpgi21016 8 109565220 to 109566132 912 CpG island CpG island 21016
Tssr82827 8 109565601 to 109565639 38 - TSS region transcription start site region 82827
Tssr82828 8 109565692 to 109565703 11 - TSS region transcription start site region 82828
Tssr82829 8 109565704 to 109565715 11 - TSS region transcription start site region 82829
Tssr82830 8 109565735 to 109565748 13 - TSS region transcription start site region 82830
Tssr82831 8 109565844 to 109565854 10 - TSS region transcription start site region 82831
Txnl4b 8 109565986 to 109574051 8065 + protein coding gene thioredoxin-like 4B
Tssr79357 8 109566027 to 109566031 4 + TSS region transcription start site region 79357