Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:108944027-110092640

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfhx3 8 108704177 to 108961636 257459 + protein coding gene zinc finger homeobox 3
Tssr79343 8 108948158 to 108948169 11 + TSS region transcription start site region 79343
Cpgi21008 8 108949281 to 108949653 372 CpG island CpG island 21008
Cpgi21009 8 108950155 to 108950347 192 CpG island CpG island 21009
Cpgi21010 8 108955997 to 108957077 1080 CpG island CpG island 21010
Tssr79344 8 108956704 to 108956715 11 + TSS region transcription start site region 79344
Tssr79345 8 108957285 to 108957287 2 + TSS region transcription start site region 79345
Tssr79346 8 108957863 to 108957867 4 + TSS region transcription start site region 79346
Tssr79347 8 108958871 to 108958890 19 + TSS region transcription start site region 79347
Tssr79348 8 108958951 to 108958957 6 + TSS region transcription start site region 79348
Tssr79349 8 108959476 to 108959480 4 + TSS region transcription start site region 79349
Tssr79350 8 108959563 to 108959587 24 + TSS region transcription start site region 79350
Tssr79351 8 108961160 to 108961173 13 + TSS region transcription start site region 79351
D8Mit114 8 108992018 to 108992127 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 114
Gm18925 8 109039300 to 109040438 1138 + pseudogene predicted gene, 18925
Cpgi21011 8 109075170 to 109075521 351 CpG island CpG island 21011
Tssr79352 8 109075208 to 109075224 16 + TSS region transcription start site region 79352
D030068K23Rik 8 109075222 to 109253639 178417 + lincRNA gene RIKEN cDNA D030068K23 gene
4922502B01Rik 8 109145219 to 109249862 104643 - lncRNA gene RIKEN cDNA 4922502B01 gene
A730093L10Rik 8 109180754 to 109185633 4879 unclassified non-coding RNA gene RIKEN cDNA A730093L10 gene
Tssr79353 8 109247310 to 109247314 4 + TSS region transcription start site region 79353
Tssr82822 8 109251395 to 109251407 12 - TSS region transcription start site region 82822
Tssr82823 8 109251419 to 109251436 17 - TSS region transcription start site region 82823
Tssr82824 8 109251478 to 109251491 13 - TSS region transcription start site region 82824
Tssr82825 8 109251698 to 109251713 15 - TSS region transcription start site region 82825
Gm1943 8 109340691 to 109340864 173 - pseudogene predicted gene 1943
Tssr82826 8 109340860 to 109340872 12 - TSS region transcription start site region 82826
Cpgi21012 8 109353001 to 109353281 280 CpG island CpG island 21012
Tssr79354 8 109377842 to 109377868 26 + TSS region transcription start site region 79354
Cpgi21013 8 109414128 to 109414409 281 CpG island CpG island 21013
Gm23163 8 109425644 to 109425744 100 - miRNA gene predicted gene, 23163
Gm35145 8 109447209 to 109462969 15760 - lncRNA gene predicted gene, 35145
Cpgi21014 8 109458717 to 109458904 187 CpG island CpG island 21014
Gm39246 8 109467860 to 109493962 26102 - lncRNA gene predicted gene, 39246
Cpgi21015 8 109484060 to 109484229 169 CpG island CpG island 21015
Tssr79355 8 109493982 to 109494026 44 + TSS region transcription start site region 79355
Pmfbp1 8 109494027 to 109542640 48613 + protein coding gene polyamine modulated factor 1 binding protein 1
Tssr2684 8 109494028 to 109494033 5 + TSS region transcription start site region 2684
Tssr79356 8 109494196 to 109494209 13 + TSS region transcription start site region 79356
8430428J23Rik 8 109545280 to 109547261 1981 unclassified gene RIKEN cDNA 8430428J23 gene
Dhx38 8 109548011 to 109565861 17850 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 38
Cpgi21016 8 109565220 to 109566132 912 CpG island CpG island 21016
Tssr82827 8 109565601 to 109565639 38 - TSS region transcription start site region 82827
Tssr82828 8 109565692 to 109565703 11 - TSS region transcription start site region 82828
Tssr82829 8 109565704 to 109565715 11 - TSS region transcription start site region 82829
Tssr82830 8 109565735 to 109565748 13 - TSS region transcription start site region 82830
Tssr82831 8 109565844 to 109565854 10 - TSS region transcription start site region 82831
Txnl4b 8 109565986 to 109574051 8065 + protein coding gene thioredoxin-like 4B
Tssr79357 8 109566027 to 109566031 4 + TSS region transcription start site region 79357
Hp 8 109575128 to 109579172 4044 - protein coding gene haptoglobin
Tssr82832 8 109575186 to 109575199 13 - TSS region transcription start site region 82832
Tssr82833 8 109575353 to 109575368 15 - TSS region transcription start site region 82833
Tssr82834 8 109575398 to 109575415 17 - TSS region transcription start site region 82834
Tssr82835 8 109575484 to 109575496 12 - TSS region transcription start site region 82835
Tssr82836 8 109575600 to 109575640 40 - TSS region transcription start site region 82836
Tssr82837 8 109575670 to 109575753 83 - TSS region transcription start site region 82837
Tssr82838 8 109575760 to 109575770 10 - TSS region transcription start site region 82838
Tssr82839 8 109575773 to 109575796 23 - TSS region transcription start site region 82839
Tssr79358 8 109575780 to 109575797 17 + TSS region transcription start site region 79358
Tssr79359 8 109575834 to 109575850 16 + TSS region transcription start site region 79359
Tssr82840 8 109575920 to 109575931 11 - TSS region transcription start site region 82840
Tssr82841 8 109575942 to 109576000 58 - TSS region transcription start site region 82841
Tssr82842 8 109576742 to 109576761 19 - TSS region transcription start site region 82842
Tssr82843 8 109576762 to 109576783 21 - TSS region transcription start site region 82843
Tssr82844 8 109577158 to 109577212 54 - TSS region transcription start site region 82844
Tssr82845 8 109577213 to 109577238 25 - TSS region transcription start site region 82845
Tssr82846 8 109577510 to 109577529 19 - TSS region transcription start site region 82846
Tssr82847 8 109577535 to 109577572 37 - TSS region transcription start site region 82847
Tssr82848 8 109578783 to 109578787 4 - TSS region transcription start site region 82848
Tssr82849 8 109579040 to 109579055 15 - TSS region transcription start site region 82849
Tssr82850 8 109579056 to 109579072 16 - TSS region transcription start site region 82850
Gm39247 8 109583210 to 109584295 1085 - lncRNA gene predicted gene, 39247
Dhodh 8 109593244 to 109608703 15459 - protein coding gene dihydroorotate dehydrogenase
Cpgi21017 8 109608266 to 109608823 557 CpG island CpG island 21017
Tssr82851 8 109608375 to 109608409 34 - TSS region transcription start site region 82851
Tssr82852 8 109608415 to 109608422 7 - TSS region transcription start site region 82852
Tssr79360 8 109608728 to 109608769 41 + TSS region transcription start site region 79360
Pkd1l3 8 109613993 to 109672592 58599 + protein coding gene polycystic kidney disease 1 like 3
Tssr79361 8 109614228 to 109614239 11 + TSS region transcription start site region 79361
Tssr79362 8 109614417 to 109614421 4 + TSS region transcription start site region 79362
Ist1 8 109671325 to 109693260 21935 - protein coding gene increased sodium tolerance 1 homolog (yeast)
Tssr82853 8 109682193 to 109682208 15 - TSS region transcription start site region 82853
Cpgi21018 8 109692691 to 109693794 1103 CpG island CpG island 21018
Tssr82854 8 109693202 to 109693211 9 - TSS region transcription start site region 82854
Tssr82855 8 109693215 to 109693226 11 - TSS region transcription start site region 82855
Tssr82856 8 109693235 to 109693289 54 - TSS region transcription start site region 82856
Tssr79363 8 109693444 to 109693460 16 + TSS region transcription start site region 79363
Cpgi21019 8 109704918 to 109706493 1575 CpG island CpG island 21019
Tssr79364 8 109705501 to 109705519 18 + TSS region transcription start site region 79364
Zfp821 8 109705546 to 109724932 19386 + protein coding gene zinc finger protein 821
Tssr79365 8 109705578 to 109705636 58 + TSS region transcription start site region 79365
Tssr79366 8 109705640 to 109705666 26 + TSS region transcription start site region 79366
Gm39248 8 109710048 to 109713503 3455 - lncRNA gene predicted gene, 39248
Atxn1l 8 109726451 to 109737739 11288 - protein coding gene ataxin 1-like
Cpgi21020 8 109737099 to 109737927 828 CpG island CpG island 21020
Tssr82857 8 109737714 to 109737786 72 - TSS region transcription start site region 82857
Gm8970 8 109751037 to 109751952 915 - pseudogene predicted gene 8970
Tssr82858 8 109752249 to 109752267 18 - TSS region transcription start site region 82858
Cpgi21021 8 109778353 to 109779613 1260 CpG island CpG island 21021
Tssr79367 8 109778555 to 109778558 3 + TSS region transcription start site region 79367
Tssr79368 8 109778566 to 109778577 11 + TSS region transcription start site region 79368
Ap1g1 8 109778583 to 109864210 85627 + protein coding gene adaptor protein complex AP-1, gamma 1 subunit
Tssr79369 8 109778591 to 109778651 60 + TSS region transcription start site region 79369
Tssr79370 8 109778654 to 109778678 24 + TSS region transcription start site region 79370
Tssr79371 8 109778850 to 109778861 11 + TSS region transcription start site region 79371
Tssr79372 8 109778863 to 109778921 58 + TSS region transcription start site region 79372
Tssr79373 8 109781512 to 109781515 3 + TSS region transcription start site region 79373
D14Sfk6 8 109792460 to 109792644 184 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 6
Tssr79374 8 109830480 to 109830484 4 + TSS region transcription start site region 79374
Tssr79375 8 109838768 to 109838782 14 + TSS region transcription start site region 79375
Snord71 8 109839312 to 109839375 63 + snoRNA gene small nucleolar RNA, C/D box 71
Gm25321 8 109840588 to 109840689 101 - snRNA gene predicted gene, 25321
A230107O07Rik 8 109845572 to 109847163 1591 unclassified gene RIKEN cDNA A230107O07 gene
D8Mit1009a 8 109854460 to 109854621 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009a
D8Mit1009b 8 109854488 to 109854621 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009b
D8Mit1010 8 109854562 to 109854689 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1010
Tssr79376 8 109855003 to 109855017 14 + TSS region transcription start site region 79376
Gm17344 8 109859984 to 109868455 8471 - antisense lncRNA gene predicted gene, 17344
Tssr79377 8 109860262 to 109860281 19 + TSS region transcription start site region 79377
Cpgi21022 8 109868099 to 109869595 1496 CpG island CpG island 21022
Tssr82859 8 109868421 to 109868439 18 - TSS region transcription start site region 82859
Tssr79378 8 109868531 to 109868584 53 + TSS region transcription start site region 79378
Phlpp2 8 109868542 to 109944671 76129 + protein coding gene PH domain and leucine rich repeat protein phosphatase 2
Tssr79379 8 109868586 to 109868609 23 + TSS region transcription start site region 79379
D8Mit269 8 109877669 to 109877793 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 269
Gm16349 8 109925388 to 109933663 8275 + unclassified non-coding RNA gene predicted gene 16349
D14Sfk4 8 109932219 to 109932470 251 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 4
Marveld3 8 109947914 to 109962203 14289 - protein coding gene MARVEL (membrane-associating) domain containing 3
Cpgi21023 8 109948016 to 109948655 639 CpG island CpG island 21023
Cpgi21024 8 109961639 to 109962434 795 CpG island CpG island 21024
Tssr82860 8 109961911 to 109961933 22 - TSS region transcription start site region 82860
Tssr2685 8 109962071 to 109962080 9 - TSS region transcription start site region 2685
Tssr82861 8 109962084 to 109962126 42 - TSS region transcription start site region 82861
Tssr82862 8 109962127 to 109962213 86 - TSS region transcription start site region 82862
Cpgi21025 8 109969162 to 109969558 396 CpG island CpG island 21025
Gm45795 8 109973953 to 109974352 399 - pseudogene predicted gene 45795
2010109N18Rik 8 109986051 to 109986755 704 unclassified gene RIKEN cDNA 2010109N18 gene
Tssr79380 8 109986650 to 109986676 26 + TSS region transcription start site region 79380
Tssr79381 8 109990430 to 109990447 17 + TSS region transcription start site region 79381
Tat 8 109990437 to 109999803 9366 + protein coding gene tyrosine aminotransferase
Tssr79382 8 109991557 to 109991568 11 + TSS region transcription start site region 79382
Tssr79383 8 109991680 to 109991687 7 + TSS region transcription start site region 79383
Tssr82863 8 109991900 to 109991916 16 - TSS region transcription start site region 82863
Tssr79384 8 109992599 to 109992610 11 + TSS region transcription start site region 79384
Tssr79385 8 109993916 to 109993928 12 + TSS region transcription start site region 79385
Tssr79386 8 109996084 to 109996117 33 + TSS region transcription start site region 79386
Tssr79387 8 109997540 to 109997552 12 + TSS region transcription start site region 79387
Tssr79388 8 109997572 to 109997576 4 + TSS region transcription start site region 79388
Tssr79389 8 109998350 to 109998361 11 + TSS region transcription start site region 79389
Tssr79390 8 109998771 to 109998786 15 + TSS region transcription start site region 79390
Tssr79391 8 109998792 to 109998823 31 + TSS region transcription start site region 79391
Tssr79392 8 109998826 to 109998842 16 + TSS region transcription start site region 79392
Tssr79393 8 109998889 to 109998894 5 + TSS region transcription start site region 79393
Tssr79394 8 109998911 to 109998919 8 + TSS region transcription start site region 79394
Tssr79395 8 109998926 to 109998941 15 + TSS region transcription start site region 79395
Tssr79396 8 109998949 to 109998958 9 + TSS region transcription start site region 79396
Tssr79397 8 109999003 to 109999025 22 + TSS region transcription start site region 79397
Tssr79398 8 109999247 to 109999261 14 + TSS region transcription start site region 79398
Tssr79399 8 109999301 to 109999310 9 + TSS region transcription start site region 79399
Tssr79400 8 109999350 to 109999364 14 + TSS region transcription start site region 79400
1700064F23Rik 8 110006525 to 110007526 1001 + lncRNA gene RIKEN cDNA 1700064F23 gene
Cpgi21026 8 110008107 to 110008444 337 CpG island CpG island 21026
Gm45888 8 110011375 to 110014324 2949 - pseudogene predicted gene 45888
Cpgi21027 8 110013641 to 110013817 176 CpG island CpG island 21027
Cpgi21028 8 110021397 to 110021591 194 CpG island CpG island 21028
Chst4 8 110029075 to 110039374 10299 - protein coding gene carbohydrate sulfotransferase 4
Cpgi21029 8 110029980 to 110030584 604 CpG island CpG island 21029
Tssr82864 8 110039330 to 110039350 20 - TSS region transcription start site region 82864
Tssr82865 8 110039351 to 110039362 11 - TSS region transcription start site region 82865
Tssr82866 8 110039371 to 110039396 25 - TSS region transcription start site region 82866
Tssr79401 8 110039449 to 110039478 29 + TSS region transcription start site region 79401
8030455M16Rik 8 110047432 to 110057176 9744 + lincRNA gene RIKEN cDNA 8030455M16 gene
Cpgi21030 8 110079439 to 110080165 726 CpG island CpG island 21030
Tssr79402 8 110079710 to 110079756 46 + TSS region transcription start site region 79402
Zfp612 8 110079746 to 110092741 12995 + protein coding gene zinc finger protein 612
Tssr79403 8 110079758 to 110079774 16 + TSS region transcription start site region 79403
Gm17720 8 110082803 to 110102753 19950 - protein coding gene predicted gene, 17720
Tssr79404 8 110089997 to 110090009 12 + TSS region transcription start site region 79404
Tssr79405 8 110090025 to 110090045 20 + TSS region transcription start site region 79405
Tssr79406 8 110090111 to 110090141 30 + TSS region transcription start site region 79406
Tssr79407 8 110090145 to 110090155 10 + TSS region transcription start site region 79407