Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:108806419-109696436

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfhx3 8 108704177 to 108961636 257459 + protein coding gene zinc finger homeobox 3
Tssr79340 8 108812085 to 108812094 9 + TSS region transcription start site region 79340
Tssr79341 8 108839053 to 108839062 9 + TSS region transcription start site region 79341
D8Mit113 8 108841046 to 108841183 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 113
Gm38318 8 108867562 to 108869267 1705 + unclassified gene predicted gene, 38318
Tssr82820 8 108876984 to 108877009 25 - TSS region transcription start site region 82820
Tssr82821 8 108884920 to 108884927 7 - TSS region transcription start site region 82821
D8Mit86 8 108892868 to 108893108 240 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 86
Gm20686 8 108918264 to 108921874 3610 - antisense lncRNA gene predicted gene 20686
Mir3108 8 108936860 to 108936938 78 + miRNA gene microRNA 3108
Tssr79342 8 108937077 to 108937081 4 + TSS region transcription start site region 79342
Cpgi21007 8 108939262 to 108939803 541 CpG island CpG island 21007
Tssr79343 8 108948158 to 108948169 11 + TSS region transcription start site region 79343
Cpgi21008 8 108949281 to 108949653 372 CpG island CpG island 21008
Cpgi21009 8 108950155 to 108950347 192 CpG island CpG island 21009
Cpgi21010 8 108955997 to 108957077 1080 CpG island CpG island 21010
Tssr79344 8 108956704 to 108956715 11 + TSS region transcription start site region 79344
Tssr79345 8 108957285 to 108957287 2 + TSS region transcription start site region 79345
Tssr79346 8 108957863 to 108957867 4 + TSS region transcription start site region 79346
Tssr79347 8 108958871 to 108958890 19 + TSS region transcription start site region 79347
Tssr79348 8 108958951 to 108958957 6 + TSS region transcription start site region 79348
Tssr79349 8 108959476 to 108959480 4 + TSS region transcription start site region 79349
Tssr79350 8 108959563 to 108959587 24 + TSS region transcription start site region 79350
Tssr79351 8 108961160 to 108961173 13 + TSS region transcription start site region 79351
D8Mit114 8 108992018 to 108992127 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 114
Gm18925 8 109039300 to 109040438 1138 + pseudogene predicted gene, 18925
Cpgi21011 8 109075170 to 109075521 351 CpG island CpG island 21011
Tssr79352 8 109075208 to 109075224 16 + TSS region transcription start site region 79352
D030068K23Rik 8 109075222 to 109253639 178417 + lincRNA gene RIKEN cDNA D030068K23 gene
4922502B01Rik 8 109145219 to 109249862 104643 - lncRNA gene RIKEN cDNA 4922502B01 gene
A730093L10Rik 8 109180754 to 109185633 4879 unclassified non-coding RNA gene RIKEN cDNA A730093L10 gene
Tssr79353 8 109247310 to 109247314 4 + TSS region transcription start site region 79353
Tssr82822 8 109251395 to 109251407 12 - TSS region transcription start site region 82822
Tssr82823 8 109251419 to 109251436 17 - TSS region transcription start site region 82823
Tssr82824 8 109251478 to 109251491 13 - TSS region transcription start site region 82824
Tssr82825 8 109251698 to 109251713 15 - TSS region transcription start site region 82825
Gm1943 8 109340691 to 109340864 173 - pseudogene predicted gene 1943
Tssr82826 8 109340860 to 109340872 12 - TSS region transcription start site region 82826
Cpgi21012 8 109353001 to 109353281 280 CpG island CpG island 21012
Tssr79354 8 109377842 to 109377868 26 + TSS region transcription start site region 79354
Cpgi21013 8 109414128 to 109414409 281 CpG island CpG island 21013
Gm23163 8 109425644 to 109425744 100 - miRNA gene predicted gene, 23163
Gm35145 8 109447209 to 109462969 15760 - lncRNA gene predicted gene, 35145
Cpgi21014 8 109458717 to 109458904 187 CpG island CpG island 21014
Gm39246 8 109467860 to 109493962 26102 - lncRNA gene predicted gene, 39246
Cpgi21015 8 109484060 to 109484229 169 CpG island CpG island 21015
Tssr79355 8 109493982 to 109494026 44 + TSS region transcription start site region 79355
Pmfbp1 8 109494027 to 109542640 48613 + protein coding gene polyamine modulated factor 1 binding protein 1
Tssr2684 8 109494028 to 109494033 5 + TSS region transcription start site region 2684
Tssr79356 8 109494196 to 109494209 13 + TSS region transcription start site region 79356
8430428J23Rik 8 109545280 to 109547261 1981 unclassified gene RIKEN cDNA 8430428J23 gene
Dhx38 8 109548011 to 109565861 17850 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 38
Cpgi21016 8 109565220 to 109566132 912 CpG island CpG island 21016
Tssr82827 8 109565601 to 109565639 38 - TSS region transcription start site region 82827
Tssr82828 8 109565692 to 109565703 11 - TSS region transcription start site region 82828
Tssr82829 8 109565704 to 109565715 11 - TSS region transcription start site region 82829
Tssr82830 8 109565735 to 109565748 13 - TSS region transcription start site region 82830
Tssr82831 8 109565844 to 109565854 10 - TSS region transcription start site region 82831
Txnl4b 8 109565986 to 109574051 8065 + protein coding gene thioredoxin-like 4B
Tssr79357 8 109566027 to 109566031 4 + TSS region transcription start site region 79357
Hp 8 109575128 to 109579172 4044 - protein coding gene haptoglobin
Tssr82832 8 109575186 to 109575199 13 - TSS region transcription start site region 82832
Tssr82833 8 109575353 to 109575368 15 - TSS region transcription start site region 82833
Tssr82834 8 109575398 to 109575415 17 - TSS region transcription start site region 82834
Tssr82835 8 109575484 to 109575496 12 - TSS region transcription start site region 82835
Tssr82836 8 109575600 to 109575640 40 - TSS region transcription start site region 82836
Tssr82837 8 109575670 to 109575753 83 - TSS region transcription start site region 82837
Tssr82838 8 109575760 to 109575770 10 - TSS region transcription start site region 82838
Tssr82839 8 109575773 to 109575796 23 - TSS region transcription start site region 82839
Tssr79358 8 109575780 to 109575797 17 + TSS region transcription start site region 79358
Tssr79359 8 109575834 to 109575850 16 + TSS region transcription start site region 79359
Tssr82840 8 109575920 to 109575931 11 - TSS region transcription start site region 82840
Tssr82841 8 109575942 to 109576000 58 - TSS region transcription start site region 82841
Tssr82842 8 109576742 to 109576761 19 - TSS region transcription start site region 82842
Tssr82843 8 109576762 to 109576783 21 - TSS region transcription start site region 82843
Tssr82844 8 109577158 to 109577212 54 - TSS region transcription start site region 82844
Tssr82845 8 109577213 to 109577238 25 - TSS region transcription start site region 82845
Tssr82846 8 109577510 to 109577529 19 - TSS region transcription start site region 82846
Tssr82847 8 109577535 to 109577572 37 - TSS region transcription start site region 82847
Tssr82848 8 109578783 to 109578787 4 - TSS region transcription start site region 82848
Tssr82849 8 109579040 to 109579055 15 - TSS region transcription start site region 82849
Tssr82850 8 109579056 to 109579072 16 - TSS region transcription start site region 82850
Gm39247 8 109583210 to 109584295 1085 - lncRNA gene predicted gene, 39247
Dhodh 8 109593244 to 109608703 15459 - protein coding gene dihydroorotate dehydrogenase
Cpgi21017 8 109608266 to 109608823 557 CpG island CpG island 21017
Tssr82851 8 109608375 to 109608409 34 - TSS region transcription start site region 82851
Tssr82852 8 109608415 to 109608422 7 - TSS region transcription start site region 82852
Tssr79360 8 109608728 to 109608769 41 + TSS region transcription start site region 79360
Pkd1l3 8 109613993 to 109672592 58599 + protein coding gene polycystic kidney disease 1 like 3
Tssr79361 8 109614228 to 109614239 11 + TSS region transcription start site region 79361
Tssr79362 8 109614417 to 109614421 4 + TSS region transcription start site region 79362
Ist1 8 109671325 to 109693260 21935 - protein coding gene increased sodium tolerance 1 homolog (yeast)
Tssr82853 8 109682193 to 109682208 15 - TSS region transcription start site region 82853
Cpgi21018 8 109692691 to 109693794 1103 CpG island CpG island 21018
Tssr82854 8 109693202 to 109693211 9 - TSS region transcription start site region 82854
Tssr82855 8 109693215 to 109693226 11 - TSS region transcription start site region 82855
Tssr82856 8 109693235 to 109693289 54 - TSS region transcription start site region 82856
Tssr79363 8 109693444 to 109693460 16 + TSS region transcription start site region 79363