Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:107820388-109571732

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42040 8 107779197 to 107823290 44093 + lncRNA gene predicted gene, 42040
Gm39242 8 107800429 to 107834337 33908 - lncRNA gene predicted gene, 39242
Cpgi20994 8 107824631 to 107824829 198 CpG island CpG island 20994
Gm23646 8 107840957 to 107841057 100 + miRNA gene predicted gene, 23646
Gm22825 8 107842451 to 107842551 100 + miRNA gene predicted gene, 22825
Tssr2683 8 107846842 to 107846850 8 + TSS region transcription start site region 2683
5033426E14Rik 8 107869685 to 107885011 15326 + lincRNA gene RIKEN cDNA 5033426E14 gene
Tssr82810 8 107966916 to 107966919 3 - TSS region transcription start site region 82810
Cpgi20995 8 108027613 to 108027938 325 CpG island CpG island 20995
D8Mit313 8 108031552 to 108031676 124 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 313
Cpgi20996 8 108170829 to 108171023 194 CpG island CpG island 20996
Cpgi20997 8 108175270 to 108175432 162 CpG island CpG island 20997
D8Mit1007 8 108191196 to 108191318 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1007
Gm34675 8 108305826 to 108310983 5157 - lncRNA gene predicted gene, 34675
Gm39243 8 108452224 to 108472312 20088 - lncRNA gene predicted gene, 39243
Cpgi20998 8 108483987 to 108484268 281 CpG island CpG island 20998
Gm42041 8 108512291 to 108524195 11904 - lncRNA gene predicted gene, 42041
Gm39244 8 108526937 to 108537221 10284 - lincRNA gene predicted gene, 39244
Cpgi20999 8 108537697 to 108538018 321 CpG island CpG island 20999
Tssr82811 8 108537844 to 108537861 17 - TSS region transcription start site region 82811
Lncbate1 8 108553252 to 108584595 31343 - lincRNA gene brown adipose tissue enriched long non-coding RNA 1
Cpgi21000 8 108566059 to 108566256 197 CpG island CpG island 21000
Tssr82812 8 108584327 to 108584337 10 - TSS region transcription start site region 82812
Tssr82813 8 108584353 to 108584360 7 - TSS region transcription start site region 82813
Tssr82814 8 108584467 to 108584477 10 - TSS region transcription start site region 82814
Tssr82815 8 108584540 to 108584556 16 - TSS region transcription start site region 82815
Tssr82816 8 108584559 to 108584576 17 - TSS region transcription start site region 82816
Tssr82817 8 108584647 to 108584658 11 - TSS region transcription start site region 82817
Tssr82818 8 108584722 to 108584732 10 - TSS region transcription start site region 82818
Tssr79322 8 108585047 to 108585051 4 + TSS region transcription start site region 79322
Tssr79323 8 108612213 to 108612231 18 + TSS region transcription start site region 79323
Tssr79324 8 108612258 to 108612278 20 + TSS region transcription start site region 79324
D8Mit34 8 108627449 to 108627554 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 34
Gm42042 8 108637580 to 108677384 39804 + lncRNA gene predicted gene, 42042
Tssr79325 8 108638032 to 108638037 5 + TSS region transcription start site region 79325
Gm42043 8 108677589 to 108695612 18023 - lncRNA gene predicted gene, 42043
Cpgi21001 8 108695388 to 108696732 1344 CpG island CpG island 21001
Tssr79326 8 108703454 to 108703501 47 + TSS region transcription start site region 79326
Tssr79327 8 108703555 to 108703564 9 + TSS region transcription start site region 79327
Tssr79328 8 108703593 to 108703617 24 + TSS region transcription start site region 79328
Cpgi21002 8 108703602 to 108705321 1719 CpG island CpG island 21002
Tssr79329 8 108703618 to 108703650 32 + TSS region transcription start site region 79329
Tssr79330 8 108703670 to 108703710 40 + TSS region transcription start site region 79330
Tssr79331 8 108703741 to 108703772 31 + TSS region transcription start site region 79331
Tssr79332 8 108703838 to 108703893 55 + TSS region transcription start site region 79332
Tssr79333 8 108703943 to 108703956 13 + TSS region transcription start site region 79333
Tssr79334 8 108704074 to 108704107 33 + TSS region transcription start site region 79334
Zfhx3 8 108704177 to 108961636 257459 + protein coding gene zinc finger homeobox 3
Tssr79335 8 108704261 to 108704283 22 + TSS region transcription start site region 79335
Cpgi21003 8 108714245 to 108715575 1330 CpG island CpG island 21003
Tssr79336 8 108714958 to 108715057 99 + TSS region transcription start site region 79336
Tssr79337 8 108715058 to 108715098 40 + TSS region transcription start site region 79337
Tssr82819 8 108722757 to 108722773 16 - TSS region transcription start site region 82819
Tssr79338 8 108724727 to 108724733 6 + TSS region transcription start site region 79338
Gm38042 8 108737593 to 108742800 5207 + unclassified gene predicted gene, 38042
Cpgi21004 8 108738301 to 108738493 192 CpG island CpG island 21004
D8Ertd158e 8 108742542 to 108742741 199 DNA segment DNA segment, Chr 8, ERATO Doi 158, expressed
Tssr79339 8 108749509 to 108749525 16 + TSS region transcription start site region 79339
Cpgi21005 8 108792205 to 108792945 740 CpG island CpG island 21005
Cpgi21006 8 108794066 to 108794933 867 CpG island CpG island 21006
Tssr79340 8 108812085 to 108812094 9 + TSS region transcription start site region 79340
Tssr79341 8 108839053 to 108839062 9 + TSS region transcription start site region 79341
D8Mit113 8 108841046 to 108841183 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 113
Gm38318 8 108867562 to 108869267 1705 + unclassified gene predicted gene, 38318
Tssr82820 8 108876984 to 108877009 25 - TSS region transcription start site region 82820
Tssr82821 8 108884920 to 108884927 7 - TSS region transcription start site region 82821
D8Mit86 8 108892868 to 108893108 240 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 86
Gm20686 8 108918264 to 108921874 3610 - antisense lncRNA gene predicted gene 20686
Mir3108 8 108936860 to 108936938 78 + miRNA gene microRNA 3108
Tssr79342 8 108937077 to 108937081 4 + TSS region transcription start site region 79342
Cpgi21007 8 108939262 to 108939803 541 CpG island CpG island 21007
Tssr79343 8 108948158 to 108948169 11 + TSS region transcription start site region 79343
Cpgi21008 8 108949281 to 108949653 372 CpG island CpG island 21008
Cpgi21009 8 108950155 to 108950347 192 CpG island CpG island 21009
Cpgi21010 8 108955997 to 108957077 1080 CpG island CpG island 21010
Tssr79344 8 108956704 to 108956715 11 + TSS region transcription start site region 79344
Tssr79345 8 108957285 to 108957287 2 + TSS region transcription start site region 79345
Tssr79346 8 108957863 to 108957867 4 + TSS region transcription start site region 79346
Tssr79347 8 108958871 to 108958890 19 + TSS region transcription start site region 79347
Tssr79348 8 108958951 to 108958957 6 + TSS region transcription start site region 79348
Tssr79349 8 108959476 to 108959480 4 + TSS region transcription start site region 79349
Tssr79350 8 108959563 to 108959587 24 + TSS region transcription start site region 79350
Tssr79351 8 108961160 to 108961173 13 + TSS region transcription start site region 79351
D8Mit114 8 108992018 to 108992127 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 114
Gm18925 8 109039300 to 109040438 1138 + pseudogene predicted gene, 18925
Cpgi21011 8 109075170 to 109075521 351 CpG island CpG island 21011
Tssr79352 8 109075208 to 109075224 16 + TSS region transcription start site region 79352
D030068K23Rik 8 109075222 to 109253639 178417 + lincRNA gene RIKEN cDNA D030068K23 gene
4922502B01Rik 8 109145219 to 109249862 104643 - lncRNA gene RIKEN cDNA 4922502B01 gene
A730093L10Rik 8 109180754 to 109185633 4879 unclassified non-coding RNA gene RIKEN cDNA A730093L10 gene
Tssr79353 8 109247310 to 109247314 4 + TSS region transcription start site region 79353
Tssr82822 8 109251395 to 109251407 12 - TSS region transcription start site region 82822
Tssr82823 8 109251419 to 109251436 17 - TSS region transcription start site region 82823
Tssr82824 8 109251478 to 109251491 13 - TSS region transcription start site region 82824
Tssr82825 8 109251698 to 109251713 15 - TSS region transcription start site region 82825
Gm1943 8 109340691 to 109340864 173 - pseudogene predicted gene 1943
Tssr82826 8 109340860 to 109340872 12 - TSS region transcription start site region 82826
Cpgi21012 8 109353001 to 109353281 280 CpG island CpG island 21012
Tssr79354 8 109377842 to 109377868 26 + TSS region transcription start site region 79354
Cpgi21013 8 109414128 to 109414409 281 CpG island CpG island 21013
Gm23163 8 109425644 to 109425744 100 - miRNA gene predicted gene, 23163
Gm35145 8 109447209 to 109462969 15760 - lncRNA gene predicted gene, 35145
Cpgi21014 8 109458717 to 109458904 187 CpG island CpG island 21014
Gm39246 8 109467860 to 109493962 26102 - lncRNA gene predicted gene, 39246
Cpgi21015 8 109484060 to 109484229 169 CpG island CpG island 21015
Tssr79355 8 109493982 to 109494026 44 + TSS region transcription start site region 79355
Pmfbp1 8 109494027 to 109542640 48613 + protein coding gene polyamine modulated factor 1 binding protein 1
Tssr2684 8 109494028 to 109494033 5 + TSS region transcription start site region 2684
Tssr79356 8 109494196 to 109494209 13 + TSS region transcription start site region 79356
8430428J23Rik 8 109545280 to 109547261 1981 unclassified gene RIKEN cDNA 8430428J23 gene
Dhx38 8 109548011 to 109565861 17850 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 38
Cpgi21016 8 109565220 to 109566132 912 CpG island CpG island 21016
Tssr82827 8 109565601 to 109565639 38 - TSS region transcription start site region 82827
Tssr82828 8 109565692 to 109565703 11 - TSS region transcription start site region 82828
Tssr82829 8 109565704 to 109565715 11 - TSS region transcription start site region 82829
Tssr82830 8 109565735 to 109565748 13 - TSS region transcription start site region 82830
Tssr82831 8 109565844 to 109565854 10 - TSS region transcription start site region 82831
Txnl4b 8 109565986 to 109574051 8065 + protein coding gene thioredoxin-like 4B
Tssr79357 8 109566027 to 109566031 4 + TSS region transcription start site region 79357