Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:107419197-108183290

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nob1 8 107412489 to 107425038 12549 - protein coding gene NIN1/RPN12 binding protein 1 homolog
Tssr82798 8 107421551 to 107421558 7 - TSS region transcription start site region 82798
Cpgi20990 8 107424529 to 107425254 725 CpG island CpG island 20990
Tssr82799 8 107425029 to 107425056 27 - TSS region transcription start site region 82799
Cpgi20991 8 107436027 to 107437026 999 CpG island CpG island 20991
Tssr79310 8 107436355 to 107436421 66 + TSS region transcription start site region 79310
Wwp2 8 107436365 to 107558595 122230 + protein coding gene WW domain containing E3 ubiquitin protein ligase 2
A430107J10Rik 8 107436833 to 107438477 1644 unclassified gene RIKEN cDNA A430107J10 gene
Rps26-ps1 8 107439150 to 107439585 435 - pseudogene ribosomal protein S26, pseudogene 1
Tssr82800 8 107439585 to 107439593 8 - TSS region transcription start site region 82800
Gm45900 8 107444284 to 107444692 408 - pseudogene predicted gene 45900
Gm39241 8 107446962 to 107450204 3242 - lncRNA gene predicted gene, 39241
Tssr79311 8 107454134 to 107454160 26 + TSS region transcription start site region 79311
E430022E14Rik 8 107455455 to 107457324 1869 unclassified gene RIKEN cDNA E430022E14 gene
Tssr79312 8 107457777 to 107457790 13 + TSS region transcription start site region 79312
Tssr79313 8 107457796 to 107457805 9 + TSS region transcription start site region 79313
Tssr79314 8 107502562 to 107502597 35 + TSS region transcription start site region 79314
Tssr79315 8 107503182 to 107503202 20 + TSS region transcription start site region 79315
Tssr82801 8 107505711 to 107505725 14 - TSS region transcription start site region 82801
Tssr79316 8 107506257 to 107506264 7 + TSS region transcription start site region 79316
Tssr79317 8 107545011 to 107545026 15 + TSS region transcription start site region 79317
Tssr79318 8 107545032 to 107545046 14 + TSS region transcription start site region 79318
Tssr79319 8 107545059 to 107545075 16 + TSS region transcription start site region 79319
Tssr79320 8 107545083 to 107545107 24 + TSS region transcription start site region 79320
Mir140 8 107551244 to 107551313 69 + miRNA gene microRNA 140
Psmd7 8 107580381 to 107588464 8083 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
Tssr79321 8 107580899 to 107580997 98 + TSS region transcription start site region 79321
Tssr82802 8 107581057 to 107581081 24 - TSS region transcription start site region 82802
Tssr82803 8 107581145 to 107581160 15 - TSS region transcription start site region 82803
Tssr82804 8 107581190 to 107581226 36 - TSS region transcription start site region 82804
Tssr82805 8 107581241 to 107581269 28 - TSS region transcription start site region 82805
Tssr82806 8 107581288 to 107581302 14 - TSS region transcription start site region 82806
Cpgi20992 8 107587768 to 107588664 896 CpG island CpG island 20992
Tssr82807 8 107588230 to 107588241 11 - TSS region transcription start site region 82807
Tssr82808 8 107588392 to 107588463 71 - TSS region transcription start site region 82808
D8Mit138 8 107666641 to 107666832 191 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 138
Cpgi20993 8 107668141 to 107668524 383 CpG island CpG island 20993
Tssr82809 8 107682228 to 107682251 23 - TSS region transcription start site region 82809
Gm8940 8 107690626 to 107690844 218 - pseudogene predicted gene 8940
Gm42040 8 107779197 to 107823290 44093 + lncRNA gene predicted gene, 42040
Gm39242 8 107800429 to 107834337 33908 - lncRNA gene predicted gene, 39242
Cpgi20994 8 107824631 to 107824829 198 CpG island CpG island 20994
Gm23646 8 107840957 to 107841057 100 + miRNA gene predicted gene, 23646
Gm22825 8 107842451 to 107842551 100 + miRNA gene predicted gene, 22825
Tssr2683 8 107846842 to 107846850 8 + TSS region transcription start site region 2683
5033426E14Rik 8 107869685 to 107885011 15326 + lincRNA gene RIKEN cDNA 5033426E14 gene
Tssr82810 8 107966916 to 107966919 3 - TSS region transcription start site region 82810
Cpgi20995 8 108027613 to 108027938 325 CpG island CpG island 20995
D8Mit313 8 108031552 to 108031676 124 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 313
Cpgi20996 8 108170829 to 108171023 194 CpG island CpG island 20996
Cpgi20997 8 108175270 to 108175432 162 CpG island CpG island 20997