Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:107043099-107323103

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps4a 8 107031326 to 107045756 14430 + protein coding gene vacuolar protein sorting 4A
Pdf 8 107046289 to 107048614 2325 - protein coding gene peptide deformylase (mitochondrial)
Cpgi20984 8 107047847 to 107049096 1249 CpG island CpG island 20984
Tssr82779 8 107048160 to 107048172 12 - TSS region transcription start site region 82779
Tssr82780 8 107048198 to 107048209 11 - TSS region transcription start site region 82780
Tssr79282 8 107048211 to 107048285 74 + TSS region transcription start site region 79282
Gm10627 8 107048243 to 107050562 2319 unclassified gene predicted gene 10627
Tssr82781 8 107048573 to 107048631 58 - TSS region transcription start site region 82781
Cog8 8 107048709 to 107056737 8028 - protein coding gene component of oligomeric golgi complex 8
Cpgi20985 8 107055948 to 107057582 1634 CpG island CpG island 20985
Tssr82782 8 107056650 to 107056691 41 - TSS region transcription start site region 82782
Tssr82783 8 107056697 to 107056707 10 - TSS region transcription start site region 82783
Tssr79283 8 107056870 to 107056913 43 + TSS region transcription start site region 79283
Nip7 8 107056877 to 107060931 4054 + protein coding gene NIP7, nucleolar pre-rRNA processing protein
Tssr79284 8 107056922 to 107056927 5 + TSS region transcription start site region 79284
Tssr79285 8 107056931 to 107056934 3 + TSS region transcription start site region 79285
Tssr79286 8 107057191 to 107057211 20 + TSS region transcription start site region 79286
Tmed6 8 107061484 to 107065644 4160 - protein coding gene transmembrane p24 trafficking protein 6
Tssr82784 8 107063116 to 107063119 3 - TSS region transcription start site region 82784
Tssr82785 8 107065615 to 107065628 13 - TSS region transcription start site region 82785
Tssr82786 8 107065632 to 107065650 18 - TSS region transcription start site region 82786
Tssr82787 8 107065662 to 107065665 3 - TSS region transcription start site region 82787
Terf2 8 107069400 to 107096547 27147 - protein coding gene telomeric repeat binding factor 2
Tssr82788 8 107080665 to 107080667 2 - TSS region transcription start site region 82788
Tssr82789 8 107085406 to 107085417 11 - TSS region transcription start site region 82789
Cpgi20986 8 107095916 to 107096691 775 CpG island CpG island 20986
Tssr79287 8 107095935 to 107095949 14 + TSS region transcription start site region 79287
Mir7075 8 107096025 to 107096106 81 - miRNA gene microRNA 7075
Tssr82790 8 107096376 to 107096406 30 - TSS region transcription start site region 82790
Tssr82791 8 107096510 to 107096562 52 - TSS region transcription start site region 82791
Tssr79288 8 107096918 to 107096935 17 + TSS region transcription start site region 79288
Cpgi20987 8 107109121 to 107109464 343 CpG island CpG island 20987
C630050I24Rik 8 107119110 to 107119892 782 + unclassified non-coding RNA gene RIKEN cDNA C630050I24 gene
Gm39240 8 107124087 to 107126761 2674 + lncRNA gene predicted gene, 39240
Cpgi20988 8 107150377 to 107151188 811 CpG island CpG island 20988
Tssr79289 8 107150621 to 107150690 69 + TSS region transcription start site region 79289
Cyb5b 8 107150661 to 107187470 36809 + protein coding gene cytochrome b5 type B
Tssr79290 8 107153737 to 107153742 5 + TSS region transcription start site region 79290
Tssr79291 8 107165909 to 107165925 16 + TSS region transcription start site region 79291
Tssr2681 8 107168091 to 107168127 36 + TSS region transcription start site region 2681
Tssr79292 8 107183099 to 107183103 4 + TSS region transcription start site region 79292
4930517G24Rik 8 107205122 to 107217659 12537 + lncRNA gene RIKEN cDNA 4930517G24 gene
Tssr79293 8 107205316 to 107205353 37 + TSS region transcription start site region 79293
Tssr79294 8 107205367 to 107205374 7 + TSS region transcription start site region 79294
D8Mit185 8 107211742 to 107211882 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 185
Rps18-ps3 8 107262793 to 107263248 455 - pseudogene ribosomal protein S18, pseudogene 3
Tssr82792 8 107269703 to 107269728 25 - TSS region transcription start site region 82792
Cpgi20989 8 107293027 to 107294494 1467 CpG island CpG island 20989
Tssr82793 8 107293201 to 107293204 3 - TSS region transcription start site region 82793
Tssr79295 8 107293463 to 107293483 20 + TSS region transcription start site region 79295
Nfat5 8 107293470 to 107379517 86047 + protein coding gene nuclear factor of activated T cells 5
Tssr79296 8 107293500 to 107293517 17 + TSS region transcription start site region 79296
Tssr79297 8 107294405 to 107294410 5 + TSS region transcription start site region 79297
3830408D07Rik 8 107309787 to 107310803 1016 unclassified gene RIKEN cDNA 3830408D07 gene
1110035E04Rik 8 107312676 to 107314036 1360 unclassified gene RIKEN cDNA 1110035E04 gene