Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:106330563-107240681

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26786 8 106237903 to 106425728 187825 - lincRNA gene predicted gene, 26786
Smpd3 8 106252548 to 106337988 85440 - protein coding gene sphingomyelin phosphodiesterase 3, neutral
4930506A18Rik 8 106282229 to 106335754 53525 + lncRNA gene RIKEN cDNA 4930506A18 gene
Cpgi20970 8 106336395 to 106337396 1001 CpG island CpG island 20970
Cpgi20971 8 106337565 to 106338506 941 CpG island CpG island 20971
Tssr82768 8 106337929 to 106337980 51 - TSS region transcription start site region 82768
Tssr82769 8 106337987 to 106337996 9 - TSS region transcription start site region 82769
Tssr82770 8 106337997 to 106338009 12 - TSS region transcription start site region 82770
Gm46051 8 106338007 to 106339454 1447 + lncRNA gene predicted gene, 46051
Gm39238 8 106358116 to 106371283 13167 + lncRNA gene predicted gene, 39238
Tssr79246 8 106400043 to 106400061 18 + TSS region transcription start site region 79246
Gm34026 8 106400045 to 106405736 5691 + lncRNA gene predicted gene, 34026
Cpgi20972 8 106415159 to 106415811 652 CpG island CpG island 20972
Zfp90 8 106415283 to 106425889 10606 + protein coding gene zinc finger protein 90
Tssr79247 8 106415319 to 106415396 77 + TSS region transcription start site region 79247
Tssr79248 8 106415400 to 106415412 12 + TSS region transcription start site region 79248
6030452D12Rik 8 106500522 to 106507342 6820 + unclassified gene RIKEN cDNA 6030452D12 gene
Tssr79249 8 106504075 to 106504078 3 + TSS region transcription start site region 79249
Cpgi20973 8 106507690 to 106508197 507 CpG island CpG island 20973
Cpgi20974 8 106510538 to 106512086 1548 CpG island CpG island 20974
Cdh3 8 106510852 to 106556911 46059 + protein coding gene cadherin 3
Tssr79250 8 106510853 to 106510924 71 + TSS region transcription start site region 79250
Tssr79251 8 106555997 to 106556001 4 + TSS region transcription start site region 79251
Gm10073 8 106572965 to 106573432 467 - pseudogene predicted pseudogene 10073
Cpgi20975 8 106573269 to 106573472 203 CpG island CpG island 20975
Tssr82771 8 106573461 to 106573462 1 - TSS region transcription start site region 82771
1110028F18Rik 8 106587143 to 106594820 7677 + lincRNA gene RIKEN cDNA 1110028F18 gene
Gm39239 8 106592673 to 106595192 2519 - lncRNA gene predicted gene, 39239
Cpgi20976 8 106602950 to 106604489 1539 CpG island CpG island 20976
Cdh1 8 106603351 to 106670246 66895 + protein coding gene cadherin 1
Tssr79252 8 106603360 to 106603374 14 + TSS region transcription start site region 79252
Tssr79253 8 106604251 to 106604262 11 + TSS region transcription start site region 79253
Tssr79254 8 106636289 to 106636295 6 + TSS region transcription start site region 79254
Tssr79255 8 106653584 to 106653595 11 + TSS region transcription start site region 79255
Tssr79256 8 106659648 to 106659665 17 + TSS region transcription start site region 79256
Tssr79257 8 106660920 to 106660931 11 + TSS region transcription start site region 79257
Tssr79258 8 106660944 to 106661001 57 + TSS region transcription start site region 79258
Tssr79259 8 106663883 to 106663901 18 + TSS region transcription start site region 79259
Tssr79260 8 106668612 to 106668629 17 + TSS region transcription start site region 79260
Tssr79261 8 106668723 to 106668752 29 + TSS region transcription start site region 79261
Tssr79262 8 106668754 to 106668791 37 + TSS region transcription start site region 79262
Tssr79263 8 106668812 to 106668828 16 + TSS region transcription start site region 79263
Cpgi20977 8 106682883 to 106683648 765 CpG island CpG island 20977
Tssr79264 8 106683052 to 106683094 42 + TSS region transcription start site region 79264
Tango6 8 106683068 to 106851439 168371 + protein coding gene transport and golgi organization 6
Tssr79265 8 106683108 to 106683124 16 + TSS region transcription start site region 79265
Tssr79266 8 106683133 to 106683154 21 + TSS region transcription start site region 79266
Tssr79267 8 106716387 to 106716407 20 + TSS region transcription start site region 79267
Cpgi20978 8 106717977 to 106718386 409 CpG island CpG island 20978
Tssr82772 8 106769263 to 106769269 6 - TSS region transcription start site region 82772
Tssr79268 8 106769431 to 106769464 33 + TSS region transcription start site region 79268
D8Mit12 8 106785563 to 106785681 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 12
Gm34197 8 106825491 to 106846971 21480 - lncRNA gene predicted gene, 34197
D8Mit47 8 106844169 to 106844366 197 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 47
Has3 8 106870242 to 106882902 12660 + protein coding gene hyaluronan synthase 3
Cpgi20979 8 106870361 to 106871558 1197 CpG island CpG island 20979
Tssr79269 8 106870827 to 106870840 13 + TSS region transcription start site region 79269
Cpgi20980 8 106871930 to 106872258 328 CpG island CpG island 20980
Chtf8 8 106883863 to 106893601 9738 - protein coding gene CTF8, chromosome transmission fidelity factor 8
Tssr82773 8 106886330 to 106886359 29 - TSS region transcription start site region 82773
Tssr82774 8 106886394 to 106886409 15 - TSS region transcription start site region 82774
Cpgi20981 8 106892979 to 106894084 1105 CpG island CpG island 20981
Tssr82775 8 106893534 to 106893545 11 - TSS region transcription start site region 82775
Tssr82776 8 106893581 to 106893609 28 - TSS region transcription start site region 82776
Tssr79270 8 106893616 to 106893696 80 + TSS region transcription start site region 79270
Utp4 8 106893636 to 106923088 29452 + protein coding gene UTP4 small subunit processome component
Tssr79271 8 106917620 to 106917640 20 + TSS region transcription start site region 79271
Rpl10-ps2 8 106927769 to 106928413 644 - pseudogene ribosomal protein L10, pseudogene 2
Tssr82777 8 106928445 to 106928456 11 - TSS region transcription start site region 82777
9530067L11Rik 8 106933984 to 106935037 1053 unclassified gene RIKEN cDNA 9530067L11 gene
Cpgi20982 8 106935401 to 106936788 1387 CpG island CpG island 20982
Tssr82778 8 106935574 to 106935604 30 - TSS region transcription start site region 82778
Tssr79272 8 106935720 to 106935776 56 + TSS region transcription start site region 79272
Sntb2 8 106935750 to 107014192 78442 + protein coding gene syntrophin, basic 2
2900057C01Rik 8 106974832 to 106976149 1317 unclassified gene RIKEN cDNA 2900057C01 gene
D8Ertd323e 8 107000971 to 107001219 248 DNA segment DNA segment, Chr 8, ERATO Doi 323, expressed
Gm22085 8 107009502 to 107009611 109 - snRNA gene predicted gene, 22085
Tssr79273 8 107013927 to 107013973 46 + TSS region transcription start site region 79273
Tssr79274 8 107019391 to 107019398 7 + TSS region transcription start site region 79274
Gm16208 8 107029675 to 107031188 1513 - antisense lncRNA gene predicted gene 16208
Cpgi20983 8 107030957 to 107032079 1122 CpG island CpG island 20983
Tssr79275 8 107031031 to 107031035 4 + TSS region transcription start site region 79275
Tssr79276 8 107031114 to 107031126 12 + TSS region transcription start site region 79276
Tssr79277 8 107031138 to 107031149 11 + TSS region transcription start site region 79277
Tssr79278 8 107031218 to 107031229 11 + TSS region transcription start site region 79278
Tssr79279 8 107031235 to 107031246 11 + TSS region transcription start site region 79279
Tssr2680 8 107031273 to 107031291 18 + TSS region transcription start site region 2680
Tssr79280 8 107031295 to 107031350 55 + TSS region transcription start site region 79280
Vps4a 8 107031326 to 107045756 14430 + protein coding gene vacuolar protein sorting 4A
Tssr79281 8 107031354 to 107031365 11 + TSS region transcription start site region 79281
Gm16209 8 107037480 to 107038106 626 - pseudogene predicted gene 16209
Pdf 8 107046289 to 107048614 2325 - protein coding gene peptide deformylase (mitochondrial)
Cpgi20984 8 107047847 to 107049096 1249 CpG island CpG island 20984
Tssr82779 8 107048160 to 107048172 12 - TSS region transcription start site region 82779
Tssr82780 8 107048198 to 107048209 11 - TSS region transcription start site region 82780
Tssr79282 8 107048211 to 107048285 74 + TSS region transcription start site region 79282
Gm10627 8 107048243 to 107050562 2319 unclassified gene predicted gene 10627
Tssr82781 8 107048573 to 107048631 58 - TSS region transcription start site region 82781
Cog8 8 107048709 to 107056737 8028 - protein coding gene component of oligomeric golgi complex 8
Cpgi20985 8 107055948 to 107057582 1634 CpG island CpG island 20985
Tssr82782 8 107056650 to 107056691 41 - TSS region transcription start site region 82782
Tssr82783 8 107056697 to 107056707 10 - TSS region transcription start site region 82783
Tssr79283 8 107056870 to 107056913 43 + TSS region transcription start site region 79283
Nip7 8 107056877 to 107060931 4054 + protein coding gene NIP7, nucleolar pre-rRNA processing protein
Tssr79284 8 107056922 to 107056927 5 + TSS region transcription start site region 79284
Tssr79285 8 107056931 to 107056934 3 + TSS region transcription start site region 79285
Tssr79286 8 107057191 to 107057211 20 + TSS region transcription start site region 79286
Tmed6 8 107061484 to 107065644 4160 - protein coding gene transmembrane p24 trafficking protein 6
Tssr82784 8 107063116 to 107063119 3 - TSS region transcription start site region 82784
Tssr82785 8 107065615 to 107065628 13 - TSS region transcription start site region 82785
Tssr82786 8 107065632 to 107065650 18 - TSS region transcription start site region 82786
Tssr82787 8 107065662 to 107065665 3 - TSS region transcription start site region 82787
Terf2 8 107069400 to 107096547 27147 - protein coding gene telomeric repeat binding factor 2
Tssr82788 8 107080665 to 107080667 2 - TSS region transcription start site region 82788
Tssr82789 8 107085406 to 107085417 11 - TSS region transcription start site region 82789
Cpgi20986 8 107095916 to 107096691 775 CpG island CpG island 20986
Tssr79287 8 107095935 to 107095949 14 + TSS region transcription start site region 79287
Mir7075 8 107096025 to 107096106 81 - miRNA gene microRNA 7075
Tssr82790 8 107096376 to 107096406 30 - TSS region transcription start site region 82790
Tssr82791 8 107096510 to 107096562 52 - TSS region transcription start site region 82791
Tssr79288 8 107096918 to 107096935 17 + TSS region transcription start site region 79288
Cpgi20987 8 107109121 to 107109464 343 CpG island CpG island 20987
C630050I24Rik 8 107119110 to 107119892 782 + unclassified non-coding RNA gene RIKEN cDNA C630050I24 gene
Gm39240 8 107124087 to 107126761 2674 + lncRNA gene predicted gene, 39240
Cpgi20988 8 107150377 to 107151188 811 CpG island CpG island 20988
Tssr79289 8 107150621 to 107150690 69 + TSS region transcription start site region 79289
Cyb5b 8 107150661 to 107187470 36809 + protein coding gene cytochrome b5 type B
Tssr79290 8 107153737 to 107153742 5 + TSS region transcription start site region 79290
Tssr79291 8 107165909 to 107165925 16 + TSS region transcription start site region 79291
Tssr2681 8 107168091 to 107168127 36 + TSS region transcription start site region 2681
Tssr79292 8 107183099 to 107183103 4 + TSS region transcription start site region 79292
4930517G24Rik 8 107205122 to 107217659 12537 + lncRNA gene RIKEN cDNA 4930517G24 gene
Tssr79293 8 107205316 to 107205353 37 + TSS region transcription start site region 79293
Tssr79294 8 107205367 to 107205374 7 + TSS region transcription start site region 79294
D8Mit185 8 107211742 to 107211882 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 185