Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105856833-109018477

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447 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thap11 8 105855132 to 105856950 1818 + protein coding gene THAP domain containing 11
4930578M07Rik 8 105859303 to 105860422 1119 - unclassified gene RIKEN cDNA 4930578M07 gene
Cpgi20956 8 105860204 to 105861361 1157 CpG island CpG island 20956
Nutf2 8 105860580 to 105879330 18750 + protein coding gene nuclear transport factor 2
Tssr79194 8 105860597 to 105860608 11 + TSS region transcription start site region 79194
Tssr79195 8 105860636 to 105860661 25 + TSS region transcription start site region 79195
Tssr2678 8 105877388 to 105877405 17 + TSS region transcription start site region 2678
Cpgi20957 8 105880770 to 105881437 667 CpG island CpG island 20957
Edc4 8 105880873 to 105893225 12352 + protein coding gene enhancer of mRNA decapping 4
Tssr79196 8 105880875 to 105880939 64 + TSS region transcription start site region 79196
Tssr79197 8 105893542 to 105893576 34 + TSS region transcription start site region 79197
Nrn1l 8 105893567 to 105895023 1456 + protein coding gene neuritin 1-like
Cpgi20958 8 105900222 to 105901035 813 CpG island CpG island 20958
Tssr79198 8 105900421 to 105900467 46 + TSS region transcription start site region 79198
Pskh1 8 105900474 to 105931802 31328 + protein coding gene protein serine kinase H1
Tssr82704 8 105901153 to 105901192 39 - TSS region transcription start site region 82704
Ctrl 8 105932003 to 105933862 1859 - protein coding gene chymotrypsin-like
Tssr82705 8 105932054 to 105932097 43 - TSS region transcription start site region 82705
Tssr79199 8 105932076 to 105932133 57 + TSS region transcription start site region 79199
Tssr82706 8 105932401 to 105932411 10 - TSS region transcription start site region 82706
Tssr82707 8 105932594 to 105932604 10 - TSS region transcription start site region 82707
Tssr2679 8 105932611 to 105932635 24 + TSS region transcription start site region 2679
Tssr79200 8 105932638 to 105932654 16 + TSS region transcription start site region 79200
Tssr82708 8 105932667 to 105932693 26 - TSS region transcription start site region 82708
Tssr82709 8 105933017 to 105933024 7 - TSS region transcription start site region 82709
Tssr82710 8 105933025 to 105933036 11 - TSS region transcription start site region 82710
Tssr82711 8 105933042 to 105933064 22 - TSS region transcription start site region 82711
Tssr82712 8 105933185 to 105933197 12 - TSS region transcription start site region 82712
Tssr82713 8 105933228 to 105933259 31 - TSS region transcription start site region 82713
Tssr82714 8 105933560 to 105933581 21 - TSS region transcription start site region 82714
Tssr82715 8 105933715 to 105933720 5 - TSS region transcription start site region 82715
Tssr82716 8 105933832 to 105933862 30 - TSS region transcription start site region 82716
Tssr82717 8 105933865 to 105933874 9 - TSS region transcription start site region 82717
Tssr82718 8 105933928 to 105933937 9 - TSS region transcription start site region 82718
Gm16156 8 105934333 to 105945843 11510 + antisense lncRNA gene predicted gene 16156
Psmb10 8 105935735 to 105938444 2709 - protein coding gene proteasome (prosome, macropain) subunit, beta type 10
Tssr82719 8 105936836 to 105936848 12 - TSS region transcription start site region 82719
Tssr82720 8 105936892 to 105936946 54 - TSS region transcription start site region 82720
Cpgi20959 8 105936893 to 105937813 920 CpG island CpG island 20959
Tssr82721 8 105936955 to 105936966 11 - TSS region transcription start site region 82721
Tssr82722 8 105936972 to 105936983 11 - TSS region transcription start site region 82722
Tssr82723 8 105936997 to 105937025 28 - TSS region transcription start site region 82723
Tssr82724 8 105937026 to 105937042 16 - TSS region transcription start site region 82724
Tssr82725 8 105938016 to 105938042 26 - TSS region transcription start site region 82725
Tssr82726 8 105938046 to 105938134 88 - TSS region transcription start site region 82726
Tssr82727 8 105938384 to 105938421 37 - TSS region transcription start site region 82727
Tssr82728 8 105938430 to 105938445 15 - TSS region transcription start site region 82728
Lcat 8 105939551 to 105943382 3831 - protein coding gene lecithin cholesterol acyltransferase
Tssr82729 8 105939779 to 105939787 8 - TSS region transcription start site region 82729
Tssr82730 8 105939826 to 105939864 38 - TSS region transcription start site region 82730
Tssr82731 8 105939902 to 105939913 11 - TSS region transcription start site region 82731
Tssr82732 8 105940060 to 105940097 37 - TSS region transcription start site region 82732
Tssr82733 8 105940121 to 105940145 24 - TSS region transcription start site region 82733
Tssr82734 8 105941666 to 105941680 14 - TSS region transcription start site region 82734
Tssr82735 8 105942362 to 105942403 41 - TSS region transcription start site region 82735
Tssr82736 8 105943277 to 105943288 11 - TSS region transcription start site region 82736
Tssr82737 8 105943389 to 105943407 18 - TSS region transcription start site region 82737
Slc12a4 8 105943590 to 105966097 22507 - protein coding gene solute carrier family 12, member 4
Mir7074 8 105951637 to 105951699 62 - miRNA gene microRNA 7074
Cpgi20960 8 105965312 to 105966406 1094 CpG island CpG island 20960
Tssr82738 8 105966038 to 105966120 82 - TSS region transcription start site region 82738
Tssr82739 8 105966126 to 105966137 11 - TSS region transcription start site region 82739
Tssr79201 8 105971558 to 105971576 18 + TSS region transcription start site region 79201
Gm45752 8 105973097 to 105985879 12782 + lincRNA gene predicted gene 45752
Dpep3 8 105973520 to 105979419 5899 - protein coding gene dipeptidase 3
Cpgi20961 8 105978949 to 105979570 621 CpG island CpG island 20961
Tssr82740 8 105979403 to 105979412 9 - TSS region transcription start site region 82740
Tssr82741 8 105979413 to 105979444 31 - TSS region transcription start site region 82741
Dpep2 8 105984945 to 106006347 21402 - protein coding gene dipeptidase 2
Gm22972 8 105988501 to 105988631 130 - snoRNA gene predicted gene, 22972
Tssr82742 8 105988740 to 105988763 23 - TSS region transcription start site region 82742
Tssr82743 8 105989396 to 105989408 12 - TSS region transcription start site region 82743
Tssr79202 8 105989741 to 105989757 16 + TSS region transcription start site region 79202
Tssr82744 8 105990720 to 105990748 28 - TSS region transcription start site region 82744
Cpgi20962 8 105990853 to 105991071 218 CpG island CpG island 20962
Tssr82745 8 105991714 to 105991733 19 - TSS region transcription start site region 82745
Tssr82746 8 105991741 to 105991752 11 - TSS region transcription start site region 82746
Dpep2nb 8 105995466 to 106005975 10509 - protein coding gene Dpep2 neighbor
Tssr82747 8 106007098 to 106007110 12 - TSS region transcription start site region 82747
Ddx28 8 106009616 to 106011486 1870 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Cpgi20963 8 106010590 to 106011710 1120 CpG island CpG island 20963
Tssr82748 8 106011403 to 106011421 18 - TSS region transcription start site region 82748
Tssr82749 8 106011422 to 106011470 48 - TSS region transcription start site region 82749
Dus2 8 106011478 to 106053840 42362 + protein coding gene dihydrouridine synthase 2
Tssr79203 8 106011491 to 106011526 35 + TSS region transcription start site region 79203
Tssr82750 8 106052551 to 106052563 12 - TSS region transcription start site region 82750
Tssr82751 8 106052569 to 106052581 12 - TSS region transcription start site region 82751
Tssr79204 8 106052700 to 106052711 11 + TSS region transcription start site region 79204
Tssr79205 8 106052721 to 106052748 27 + TSS region transcription start site region 79205
Tssr79206 8 106053009 to 106053028 19 + TSS region transcription start site region 79206
Tssr79207 8 106053081 to 106053098 17 + TSS region transcription start site region 79207
Tssr79208 8 106054602 to 106054611 9 + TSS region transcription start site region 79208
Tssr82752 8 106058698 to 106058706 8 - TSS region transcription start site region 82752
Tssr79209 8 106058787 to 106058834 47 + TSS region transcription start site region 79209
Tssr79210 8 106058857 to 106058870 13 + TSS region transcription start site region 79210
Cpgi20964 8 106058968 to 106060325 1357 CpG island CpG island 20964
Tssr82753 8 106059228 to 106059247 19 - TSS region transcription start site region 82753
Tssr79211 8 106059562 to 106059623 61 + TSS region transcription start site region 79211
Nfatc3 8 106059584 to 106130537 70953 + protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
Tssr79212 8 106059650 to 106059695 45 + TSS region transcription start site region 79212
Tssr79213 8 106059783 to 106059793 10 + TSS region transcription start site region 79213
Gm27956 8 106071615 to 106071874 259 - unclassified non-coding RNA gene predicted gene, 27956
Tssr79214 8 106078799 to 106078818 19 + TSS region transcription start site region 79214
Tssr79215 8 106081410 to 106081412 2 + TSS region transcription start site region 79215
Tssr82754 8 106107216 to 106107241 25 - TSS region transcription start site region 82754
Tssr79216 8 106107455 to 106107459 4 + TSS region transcription start site region 79216
Tssr79217 8 106111542 to 106111553 11 + TSS region transcription start site region 79217
Tssr79218 8 106117831 to 106117835 4 + TSS region transcription start site region 79218
Esrp2 8 106130634 to 106137006 6372 - protein coding gene epithelial splicing regulatory protein 2
Tssr82755 8 106134933 to 106134943 10 - TSS region transcription start site region 82755
Tssr82756 8 106134945 to 106134960 15 - TSS region transcription start site region 82756
1810019D21Rik 8 106135400 to 106138525 3125 + lncRNA gene RIKEN cDNA 1810019D21 gene
Tssr79219 8 106135401 to 106135431 30 + TSS region transcription start site region 79219
Tssr79220 8 106135435 to 106135457 22 + TSS region transcription start site region 79220
Tssr79221 8 106135464 to 106135480 16 + TSS region transcription start site region 79221
Tssr79222 8 106135497 to 106135512 15 + TSS region transcription start site region 79222
Tssr79223 8 106135541 to 106135570 29 + TSS region transcription start site region 79223
Cpgi20965 8 106135742 to 106137629 1887 CpG island CpG island 20965
Tssr79224 8 106135869 to 106135889 20 + TSS region transcription start site region 79224
Tssr79225 8 106135942 to 106135953 11 + TSS region transcription start site region 79225
Tssr82757 8 106136792 to 106136876 84 - TSS region transcription start site region 82757
Tssr82758 8 106136890 to 106136901 11 - TSS region transcription start site region 82758
Tssr79226 8 106137058 to 106137074 16 + TSS region transcription start site region 79226
Tssr82759 8 106137368 to 106137395 27 - TSS region transcription start site region 82759
Cpgi20966 8 106138010 to 106138407 397 CpG island CpG island 20966
Tssr79227 8 106138408 to 106138421 13 + TSS region transcription start site region 79227
Tssr79228 8 106150020 to 106150063 43 + TSS region transcription start site region 79228
Cpgi20967 8 106150078 to 106150729 651 CpG island CpG island 20967
Tssr79229 8 106150359 to 106150417 58 + TSS region transcription start site region 79229
Pla2g15 8 106150399 to 106164715 14316 + protein coding gene phospholipase A2, group XV
Tssr79230 8 106150423 to 106150438 15 + TSS region transcription start site region 79230
Tssr79231 8 106150470 to 106150481 11 + TSS region transcription start site region 79231
Tssr79232 8 106161272 to 106161283 11 + TSS region transcription start site region 79232
Tssr79233 8 106163096 to 106163117 21 + TSS region transcription start site region 79233
Cpgi20968 8 106168266 to 106169703 1437 CpG island CpG island 20968
Tssr79234 8 106168857 to 106168926 69 + TSS region transcription start site region 79234
Slc7a6 8 106168857 to 106198706 29849 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
Slc7a6os 8 106200717 to 106210935 10218 - protein coding gene solute carrier family 7, member 6 opposite strand
Tssr79235 8 106201330 to 106201334 4 + TSS region transcription start site region 79235
Tssr79236 8 106210144 to 106210151 7 + TSS region transcription start site region 79236
Cpgi20969 8 106210306 to 106211585 1279 CpG island CpG island 20969
Tssr82760 8 106210924 to 106210942 18 - TSS region transcription start site region 82760
Tssr79237 8 106210960 to 106210974 14 + TSS region transcription start site region 79237
Tssr79238 8 106210993 to 106211011 18 + TSS region transcription start site region 79238
Tssr79239 8 106211016 to 106211043 27 + TSS region transcription start site region 79239
Prmt7 8 106211054 to 106251694 40640 + protein coding gene protein arginine N-methyltransferase 7
Gm26786 8 106237903 to 106425728 187825 - lincRNA gene predicted gene, 26786
Tssr79240 8 106243277 to 106243285 8 + TSS region transcription start site region 79240
Tssr79241 8 106243300 to 106243311 11 + TSS region transcription start site region 79241
Smpd3 8 106252548 to 106337988 85440 - protein coding gene sphingomyelin phosphodiesterase 3, neutral
Tssr82761 8 106280965 to 106281008 43 - TSS region transcription start site region 82761
Tssr82762 8 106281012 to 106281031 19 - TSS region transcription start site region 82762
Tssr82763 8 106281044 to 106281058 14 - TSS region transcription start site region 82763
Tssr82764 8 106281060 to 106281073 13 - TSS region transcription start site region 82764
Tssr82765 8 106282147 to 106282161 14 - TSS region transcription start site region 82765
4930506A18Rik 8 106282229 to 106335754 53525 + lncRNA gene RIKEN cDNA 4930506A18 gene
Tssr79242 8 106282240 to 106282247 7 + TSS region transcription start site region 79242
Tssr79243 8 106282249 to 106282258 9 + TSS region transcription start site region 79243
Tssr82766 8 106283213 to 106283216 3 - TSS region transcription start site region 82766
Gm10629 8 106283307 to 106300017 16710 + lincRNA gene predicted gene 10629
Tssr82767 8 106288826 to 106288831 5 - TSS region transcription start site region 82767
Tssr79244 8 106305225 to 106305229 4 + TSS region transcription start site region 79244
Tssr79245 8 106329241 to 106329247 6 + TSS region transcription start site region 79245
Cpgi20970 8 106336395 to 106337396 1001 CpG island CpG island 20970
Cpgi20971 8 106337565 to 106338506 941 CpG island CpG island 20971
Tssr82768 8 106337929 to 106337980 51 - TSS region transcription start site region 82768
Tssr82769 8 106337987 to 106337996 9 - TSS region transcription start site region 82769
Tssr82770 8 106337997 to 106338009 12 - TSS region transcription start site region 82770
Gm46051 8 106338007 to 106339454 1447 + lncRNA gene predicted gene, 46051
Gm39238 8 106358116 to 106371283 13167 + lncRNA gene predicted gene, 39238
Tssr79246 8 106400043 to 106400061 18 + TSS region transcription start site region 79246
Gm34026 8 106400045 to 106405736 5691 + lncRNA gene predicted gene, 34026
Cpgi20972 8 106415159 to 106415811 652 CpG island CpG island 20972
Zfp90 8 106415283 to 106425889 10606 + protein coding gene zinc finger protein 90
Tssr79247 8 106415319 to 106415396 77 + TSS region transcription start site region 79247
Tssr79248 8 106415400 to 106415412 12 + TSS region transcription start site region 79248
6030452D12Rik 8 106500522 to 106507342 6820 + unclassified gene RIKEN cDNA 6030452D12 gene
Tssr79249 8 106504075 to 106504078 3 + TSS region transcription start site region 79249
Cpgi20973 8 106507690 to 106508197 507 CpG island CpG island 20973
Cpgi20974 8 106510538 to 106512086 1548 CpG island CpG island 20974
Cdh3 8 106510852 to 106556911 46059 + protein coding gene cadherin 3
Tssr79250 8 106510853 to 106510924 71 + TSS region transcription start site region 79250
Tssr79251 8 106555997 to 106556001 4 + TSS region transcription start site region 79251
Gm10073 8 106572965 to 106573432 467 - pseudogene predicted pseudogene 10073
Cpgi20975 8 106573269 to 106573472 203 CpG island CpG island 20975
Tssr82771 8 106573461 to 106573462 1 - TSS region transcription start site region 82771
1110028F18Rik 8 106587143 to 106594820 7677 + lincRNA gene RIKEN cDNA 1110028F18 gene
Gm39239 8 106592673 to 106595192 2519 - lncRNA gene predicted gene, 39239
Cpgi20976 8 106602950 to 106604489 1539 CpG island CpG island 20976
Cdh1 8 106603351 to 106670246 66895 + protein coding gene cadherin 1
Tssr79252 8 106603360 to 106603374 14 + TSS region transcription start site region 79252
Tssr79253 8 106604251 to 106604262 11 + TSS region transcription start site region 79253
Tssr79254 8 106636289 to 106636295 6 + TSS region transcription start site region 79254
Tssr79255 8 106653584 to 106653595 11 + TSS region transcription start site region 79255
Tssr79256 8 106659648 to 106659665 17 + TSS region transcription start site region 79256
Tssr79257 8 106660920 to 106660931 11 + TSS region transcription start site region 79257
Tssr79258 8 106660944 to 106661001 57 + TSS region transcription start site region 79258
Tssr79259 8 106663883 to 106663901 18 + TSS region transcription start site region 79259
Tssr79260 8 106668612 to 106668629 17 + TSS region transcription start site region 79260
Tssr79261 8 106668723 to 106668752 29 + TSS region transcription start site region 79261