Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105840060-106040097

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsnaxip1 8 105827731 to 105844680 16949 + protein coding gene translin-associated factor X (Tsnax) interacting protein 1
Cenpt 8 105844673 to 105853278 8605 - protein coding gene centromere protein T
Tssr82701 8 105846745 to 105846776 31 - TSS region transcription start site region 82701
Tssr79191 8 105850834 to 105850842 8 + TSS region transcription start site region 79191
Tssr79192 8 105850857 to 105850877 20 + TSS region transcription start site region 79192
Cpgi20954 8 105851589 to 105852187 598 CpG island CpG island 20954
Tssr82702 8 105851965 to 105851979 14 - TSS region transcription start site region 82702
Tssr82703 8 105851981 to 105852036 55 - TSS region transcription start site region 82703
Cpgi20955 8 105854771 to 105856416 1645 CpG island CpG island 20955
Tssr79193 8 105855086 to 105855149 63 + TSS region transcription start site region 79193
Thap11 8 105855132 to 105856950 1818 + protein coding gene THAP domain containing 11
4930578M07Rik 8 105859303 to 105860422 1119 - unclassified gene RIKEN cDNA 4930578M07 gene
Cpgi20956 8 105860204 to 105861361 1157 CpG island CpG island 20956
Nutf2 8 105860580 to 105879330 18750 + protein coding gene nuclear transport factor 2
Tssr79194 8 105860597 to 105860608 11 + TSS region transcription start site region 79194
Tssr79195 8 105860636 to 105860661 25 + TSS region transcription start site region 79195
Tssr2678 8 105877388 to 105877405 17 + TSS region transcription start site region 2678
Cpgi20957 8 105880770 to 105881437 667 CpG island CpG island 20957
Edc4 8 105880873 to 105893225 12352 + protein coding gene enhancer of mRNA decapping 4
Tssr79196 8 105880875 to 105880939 64 + TSS region transcription start site region 79196
Tssr79197 8 105893542 to 105893576 34 + TSS region transcription start site region 79197
Nrn1l 8 105893567 to 105895023 1456 + protein coding gene neuritin 1-like
Cpgi20958 8 105900222 to 105901035 813 CpG island CpG island 20958
Tssr79198 8 105900421 to 105900467 46 + TSS region transcription start site region 79198
Pskh1 8 105900474 to 105931802 31328 + protein coding gene protein serine kinase H1
Tssr82704 8 105901153 to 105901192 39 - TSS region transcription start site region 82704
Ctrl 8 105932003 to 105933862 1859 - protein coding gene chymotrypsin-like
Tssr82705 8 105932054 to 105932097 43 - TSS region transcription start site region 82705
Tssr79199 8 105932076 to 105932133 57 + TSS region transcription start site region 79199
Tssr82706 8 105932401 to 105932411 10 - TSS region transcription start site region 82706
Tssr82707 8 105932594 to 105932604 10 - TSS region transcription start site region 82707
Tssr2679 8 105932611 to 105932635 24 + TSS region transcription start site region 2679
Tssr79200 8 105932638 to 105932654 16 + TSS region transcription start site region 79200
Tssr82708 8 105932667 to 105932693 26 - TSS region transcription start site region 82708
Tssr82709 8 105933017 to 105933024 7 - TSS region transcription start site region 82709
Tssr82710 8 105933025 to 105933036 11 - TSS region transcription start site region 82710
Tssr82711 8 105933042 to 105933064 22 - TSS region transcription start site region 82711
Tssr82712 8 105933185 to 105933197 12 - TSS region transcription start site region 82712
Tssr82713 8 105933228 to 105933259 31 - TSS region transcription start site region 82713
Tssr82714 8 105933560 to 105933581 21 - TSS region transcription start site region 82714
Tssr82715 8 105933715 to 105933720 5 - TSS region transcription start site region 82715
Tssr82716 8 105933832 to 105933862 30 - TSS region transcription start site region 82716
Tssr82717 8 105933865 to 105933874 9 - TSS region transcription start site region 82717
Tssr82718 8 105933928 to 105933937 9 - TSS region transcription start site region 82718
Gm16156 8 105934333 to 105945843 11510 + antisense lncRNA gene predicted gene 16156
Psmb10 8 105935735 to 105938444 2709 - protein coding gene proteasome (prosome, macropain) subunit, beta type 10
Tssr82719 8 105936836 to 105936848 12 - TSS region transcription start site region 82719
Tssr82720 8 105936892 to 105936946 54 - TSS region transcription start site region 82720
Cpgi20959 8 105936893 to 105937813 920 CpG island CpG island 20959
Tssr82721 8 105936955 to 105936966 11 - TSS region transcription start site region 82721
Tssr82722 8 105936972 to 105936983 11 - TSS region transcription start site region 82722
Tssr82723 8 105936997 to 105937025 28 - TSS region transcription start site region 82723
Tssr82724 8 105937026 to 105937042 16 - TSS region transcription start site region 82724
Tssr82725 8 105938016 to 105938042 26 - TSS region transcription start site region 82725
Tssr82726 8 105938046 to 105938134 88 - TSS region transcription start site region 82726
Tssr82727 8 105938384 to 105938421 37 - TSS region transcription start site region 82727
Tssr82728 8 105938430 to 105938445 15 - TSS region transcription start site region 82728
Lcat 8 105939551 to 105943382 3831 - protein coding gene lecithin cholesterol acyltransferase
Tssr82729 8 105939779 to 105939787 8 - TSS region transcription start site region 82729
Tssr82730 8 105939826 to 105939864 38 - TSS region transcription start site region 82730
Tssr82731 8 105939902 to 105939913 11 - TSS region transcription start site region 82731
Tssr82732 8 105940060 to 105940097 37 - TSS region transcription start site region 82732
Tssr82733 8 105940121 to 105940145 24 - TSS region transcription start site region 82733
Tssr82734 8 105941666 to 105941680 14 - TSS region transcription start site region 82734
Tssr82735 8 105942362 to 105942403 41 - TSS region transcription start site region 82735
Tssr82736 8 105943277 to 105943288 11 - TSS region transcription start site region 82736
Tssr82737 8 105943389 to 105943407 18 - TSS region transcription start site region 82737
Slc12a4 8 105943590 to 105966097 22507 - protein coding gene solute carrier family 12, member 4
Mir7074 8 105951637 to 105951699 62 - miRNA gene microRNA 7074
Cpgi20960 8 105965312 to 105966406 1094 CpG island CpG island 20960
Tssr82738 8 105966038 to 105966120 82 - TSS region transcription start site region 82738
Tssr82739 8 105966126 to 105966137 11 - TSS region transcription start site region 82739
Tssr79201 8 105971558 to 105971576 18 + TSS region transcription start site region 79201
Gm45752 8 105973097 to 105985879 12782 + lincRNA gene predicted gene 45752
Dpep3 8 105973520 to 105979419 5899 - protein coding gene dipeptidase 3
Cpgi20961 8 105978949 to 105979570 621 CpG island CpG island 20961
Tssr82740 8 105979403 to 105979412 9 - TSS region transcription start site region 82740
Tssr82741 8 105979413 to 105979444 31 - TSS region transcription start site region 82741
Dpep2 8 105984945 to 106006347 21402 - protein coding gene dipeptidase 2
Gm22972 8 105988501 to 105988631 130 - snoRNA gene predicted gene, 22972
Tssr82742 8 105988740 to 105988763 23 - TSS region transcription start site region 82742
Tssr82743 8 105989396 to 105989408 12 - TSS region transcription start site region 82743
Tssr79202 8 105989741 to 105989757 16 + TSS region transcription start site region 79202
Tssr82744 8 105990720 to 105990748 28 - TSS region transcription start site region 82744
Cpgi20962 8 105990853 to 105991071 218 CpG island CpG island 20962
Tssr82745 8 105991714 to 105991733 19 - TSS region transcription start site region 82745
Tssr82746 8 105991741 to 105991752 11 - TSS region transcription start site region 82746
Dpep2nb 8 105995466 to 106005975 10509 - protein coding gene Dpep2 neighbor
Tssr82747 8 106007098 to 106007110 12 - TSS region transcription start site region 82747
Ddx28 8 106009616 to 106011486 1870 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Cpgi20963 8 106010590 to 106011710 1120 CpG island CpG island 20963
Tssr82748 8 106011403 to 106011421 18 - TSS region transcription start site region 82748
Tssr82749 8 106011422 to 106011470 48 - TSS region transcription start site region 82749
Dus2 8 106011478 to 106053840 42362 + protein coding gene dihydrouridine synthase 2
Tssr79203 8 106011491 to 106011526 35 + TSS region transcription start site region 79203