Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105680720-108190776

Filter by:
438 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctcf 8 105636568 to 105682922 46354 + protein coding gene CCCTC-binding factor
Gm33578 8 105682815 to 105686220 3405 - lncRNA gene predicted gene, 33578
Cpgi20944 8 105685892 to 105686282 390 CpG island CpG island 20944
Tssr79176 8 105685987 to 105686001 14 + TSS region transcription start site region 79176
Tssr79177 8 105686027 to 105686056 29 + TSS region transcription start site region 79177
Tssr79178 8 105686146 to 105686228 82 + TSS region transcription start site region 79178
Tssr79179 8 105686231 to 105686270 39 + TSS region transcription start site region 79179
Tssr79180 8 105686273 to 105686293 20 + TSS region transcription start site region 79180
Carmil2 8 105686274 to 105698187 11913 + protein coding gene capping protein regulator and myosin 1 linker 2
Cpgi20945 8 105689308 to 105689983 675 CpG island CpG island 20945
Cpgi20946 8 105693691 to 105694710 1019 CpG island CpG island 20946
Tssr79181 8 105693826 to 105693880 54 + TSS region transcription start site region 79181
Tssr79182 8 105693926 to 105694013 87 + TSS region transcription start site region 79182
Cpgi20947 8 105695292 to 105695567 275 CpG island CpG island 20947
Acd 8 105698157 to 105701290 3133 - protein coding gene adrenocortical dysplasia
Tssr82684 8 105698807 to 105698846 39 - TSS region transcription start site region 82684
Cpgi20948 8 105700309 to 105702364 2055 CpG island CpG island 20948
Tssr82685 8 105701048 to 105701063 15 - TSS region transcription start site region 82685
Tssr82686 8 105701077 to 105701118 41 - TSS region transcription start site region 82686
Tssr79183 8 105701142 to 105701190 48 + TSS region transcription start site region 79183
Pard6a 8 105701148 to 105703494 2346 + protein coding gene par-6 family cell polarity regulator alpha
Tssr79184 8 105701624 to 105701693 69 + TSS region transcription start site region 79184
Enkd1 8 105703651 to 105708210 4559 - protein coding gene enkurin domain containing 1
Cpgi20949 8 105704120 to 105704614 494 CpG island CpG island 20949
Tssr82687 8 105704712 to 105704742 30 - TSS region transcription start site region 82687
Cpgi20950 8 105707496 to 105708203 707 CpG island CpG island 20950
Tssr82688 8 105708172 to 105708223 51 - TSS region transcription start site region 82688
Tssr79185 8 105708251 to 105708261 10 + TSS region transcription start site region 79185
Tssr79186 8 105708270 to 105708302 32 + TSS region transcription start site region 79186
4933405L10Rik 8 105708289 to 105710246 1957 + protein coding gene RIKEN cDNA 4933405L10 gene
Tssr79187 8 105708318 to 105708326 8 + TSS region transcription start site region 79187
Gfod2 8 105714046 to 105758665 44619 - protein coding gene glucose-fructose oxidoreductase domain containing 2
Cpgi20951 8 105717294 to 105717663 369 CpG island CpG island 20951
Cpgi20952 8 105758122 to 105758828 706 CpG island CpG island 20952
Tssr82689 8 105758570 to 105758657 87 - TSS region transcription start site region 82689
Ranbp10 8 105768308 to 105827350 59042 - protein coding gene RAN binding protein 10
Tssr82690 8 105771254 to 105771268 14 - TSS region transcription start site region 82690
Tssr82691 8 105774324 to 105774357 33 - TSS region transcription start site region 82691
Tssr82692 8 105816862 to 105816868 6 - TSS region transcription start site region 82692
Tssr82693 8 105817568 to 105817589 21 - TSS region transcription start site region 82693
D8Mit1005 8 105818908 to 105819220 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1005
Tssr82694 8 105826305 to 105826332 27 - TSS region transcription start site region 82694
Cpgi20953 8 105826891 to 105827904 1013 CpG island CpG island 20953
Tssr82695 8 105827190 to 105827214 24 - TSS region transcription start site region 82695
Tssr82696 8 105827593 to 105827604 11 - TSS region transcription start site region 82696
Tssr82697 8 105827617 to 105827637 20 - TSS region transcription start site region 82697
Tssr82698 8 105827642 to 105827666 24 - TSS region transcription start site region 82698
Tssr82699 8 105827680 to 105827691 11 - TSS region transcription start site region 82699
Tssr79188 8 105827721 to 105827751 30 + TSS region transcription start site region 79188
Tsnaxip1 8 105827731 to 105844680 16949 + protein coding gene translin-associated factor X (Tsnax) interacting protein 1
Tssr79189 8 105827753 to 105827769 16 + TSS region transcription start site region 79189
Tssr79190 8 105827770 to 105827773 3 + TSS region transcription start site region 79190
Gm46050 8 105830549 to 105833891 3342 - lncRNA gene predicted gene, 46050
Tssr82700 8 105833840 to 105833886 46 - TSS region transcription start site region 82700
Cenpt 8 105844673 to 105853278 8605 - protein coding gene centromere protein T
Tssr82701 8 105846745 to 105846776 31 - TSS region transcription start site region 82701
Tssr79191 8 105850834 to 105850842 8 + TSS region transcription start site region 79191
Tssr79192 8 105850857 to 105850877 20 + TSS region transcription start site region 79192
Cpgi20954 8 105851589 to 105852187 598 CpG island CpG island 20954
Tssr82702 8 105851965 to 105851979 14 - TSS region transcription start site region 82702
Tssr82703 8 105851981 to 105852036 55 - TSS region transcription start site region 82703
Cpgi20955 8 105854771 to 105856416 1645 CpG island CpG island 20955
Tssr79193 8 105855086 to 105855149 63 + TSS region transcription start site region 79193
Thap11 8 105855132 to 105856950 1818 + protein coding gene THAP domain containing 11
4930578M07Rik 8 105859303 to 105860422 1119 - unclassified gene RIKEN cDNA 4930578M07 gene
Cpgi20956 8 105860204 to 105861361 1157 CpG island CpG island 20956
Nutf2 8 105860580 to 105879330 18750 + protein coding gene nuclear transport factor 2
Tssr79194 8 105860597 to 105860608 11 + TSS region transcription start site region 79194
Tssr79195 8 105860636 to 105860661 25 + TSS region transcription start site region 79195
Tssr2678 8 105877388 to 105877405 17 + TSS region transcription start site region 2678
Cpgi20957 8 105880770 to 105881437 667 CpG island CpG island 20957
Edc4 8 105880873 to 105893225 12352 + protein coding gene enhancer of mRNA decapping 4
Tssr79196 8 105880875 to 105880939 64 + TSS region transcription start site region 79196
Tssr79197 8 105893542 to 105893576 34 + TSS region transcription start site region 79197
Nrn1l 8 105893567 to 105895023 1456 + protein coding gene neuritin 1-like
Cpgi20958 8 105900222 to 105901035 813 CpG island CpG island 20958
Tssr79198 8 105900421 to 105900467 46 + TSS region transcription start site region 79198
Pskh1 8 105900474 to 105931802 31328 + protein coding gene protein serine kinase H1
Tssr82704 8 105901153 to 105901192 39 - TSS region transcription start site region 82704
Ctrl 8 105932003 to 105933862 1859 - protein coding gene chymotrypsin-like
Tssr82705 8 105932054 to 105932097 43 - TSS region transcription start site region 82705
Tssr79199 8 105932076 to 105932133 57 + TSS region transcription start site region 79199
Tssr82706 8 105932401 to 105932411 10 - TSS region transcription start site region 82706
Tssr82707 8 105932594 to 105932604 10 - TSS region transcription start site region 82707
Tssr2679 8 105932611 to 105932635 24 + TSS region transcription start site region 2679
Tssr79200 8 105932638 to 105932654 16 + TSS region transcription start site region 79200
Tssr82708 8 105932667 to 105932693 26 - TSS region transcription start site region 82708
Tssr82709 8 105933017 to 105933024 7 - TSS region transcription start site region 82709
Tssr82710 8 105933025 to 105933036 11 - TSS region transcription start site region 82710
Tssr82711 8 105933042 to 105933064 22 - TSS region transcription start site region 82711
Tssr82712 8 105933185 to 105933197 12 - TSS region transcription start site region 82712
Tssr82713 8 105933228 to 105933259 31 - TSS region transcription start site region 82713
Tssr82714 8 105933560 to 105933581 21 - TSS region transcription start site region 82714
Tssr82715 8 105933715 to 105933720 5 - TSS region transcription start site region 82715
Tssr82716 8 105933832 to 105933862 30 - TSS region transcription start site region 82716
Tssr82717 8 105933865 to 105933874 9 - TSS region transcription start site region 82717
Tssr82718 8 105933928 to 105933937 9 - TSS region transcription start site region 82718
Gm16156 8 105934333 to 105945843 11510 + antisense lncRNA gene predicted gene 16156
Psmb10 8 105935735 to 105938444 2709 - protein coding gene proteasome (prosome, macropain) subunit, beta type 10
Tssr82719 8 105936836 to 105936848 12 - TSS region transcription start site region 82719
Tssr82720 8 105936892 to 105936946 54 - TSS region transcription start site region 82720
Cpgi20959 8 105936893 to 105937813 920 CpG island CpG island 20959
Tssr82721 8 105936955 to 105936966 11 - TSS region transcription start site region 82721
Tssr82722 8 105936972 to 105936983 11 - TSS region transcription start site region 82722
Tssr82723 8 105936997 to 105937025 28 - TSS region transcription start site region 82723
Tssr82724 8 105937026 to 105937042 16 - TSS region transcription start site region 82724
Tssr82725 8 105938016 to 105938042 26 - TSS region transcription start site region 82725
Tssr82726 8 105938046 to 105938134 88 - TSS region transcription start site region 82726
Tssr82727 8 105938384 to 105938421 37 - TSS region transcription start site region 82727
Tssr82728 8 105938430 to 105938445 15 - TSS region transcription start site region 82728
Lcat 8 105939551 to 105943382 3831 - protein coding gene lecithin cholesterol acyltransferase
Tssr82729 8 105939779 to 105939787 8 - TSS region transcription start site region 82729
Tssr82730 8 105939826 to 105939864 38 - TSS region transcription start site region 82730
Tssr82731 8 105939902 to 105939913 11 - TSS region transcription start site region 82731
Tssr82732 8 105940060 to 105940097 37 - TSS region transcription start site region 82732
Tssr82733 8 105940121 to 105940145 24 - TSS region transcription start site region 82733
Tssr82734 8 105941666 to 105941680 14 - TSS region transcription start site region 82734
Tssr82735 8 105942362 to 105942403 41 - TSS region transcription start site region 82735
Tssr82736 8 105943277 to 105943288 11 - TSS region transcription start site region 82736
Tssr82737 8 105943389 to 105943407 18 - TSS region transcription start site region 82737
Slc12a4 8 105943590 to 105966097 22507 - protein coding gene solute carrier family 12, member 4
Mir7074 8 105951637 to 105951699 62 - miRNA gene microRNA 7074
Cpgi20960 8 105965312 to 105966406 1094 CpG island CpG island 20960
Tssr82738 8 105966038 to 105966120 82 - TSS region transcription start site region 82738
Tssr82739 8 105966126 to 105966137 11 - TSS region transcription start site region 82739
Tssr79201 8 105971558 to 105971576 18 + TSS region transcription start site region 79201
Gm45752 8 105973097 to 105985879 12782 + lincRNA gene predicted gene 45752
Dpep3 8 105973520 to 105979419 5899 - protein coding gene dipeptidase 3
Cpgi20961 8 105978949 to 105979570 621 CpG island CpG island 20961
Tssr82740 8 105979403 to 105979412 9 - TSS region transcription start site region 82740
Tssr82741 8 105979413 to 105979444 31 - TSS region transcription start site region 82741
Dpep2 8 105984945 to 106006347 21402 - protein coding gene dipeptidase 2
Gm22972 8 105988501 to 105988631 130 - snoRNA gene predicted gene, 22972
Tssr82742 8 105988740 to 105988763 23 - TSS region transcription start site region 82742
Tssr82743 8 105989396 to 105989408 12 - TSS region transcription start site region 82743
Tssr79202 8 105989741 to 105989757 16 + TSS region transcription start site region 79202
Tssr82744 8 105990720 to 105990748 28 - TSS region transcription start site region 82744
Cpgi20962 8 105990853 to 105991071 218 CpG island CpG island 20962
Tssr82745 8 105991714 to 105991733 19 - TSS region transcription start site region 82745
Tssr82746 8 105991741 to 105991752 11 - TSS region transcription start site region 82746
Dpep2nb 8 105995466 to 106005975 10509 - protein coding gene Dpep2 neighbor
Tssr82747 8 106007098 to 106007110 12 - TSS region transcription start site region 82747
Ddx28 8 106009616 to 106011486 1870 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Cpgi20963 8 106010590 to 106011710 1120 CpG island CpG island 20963
Tssr82748 8 106011403 to 106011421 18 - TSS region transcription start site region 82748
Tssr82749 8 106011422 to 106011470 48 - TSS region transcription start site region 82749
Dus2 8 106011478 to 106053840 42362 + protein coding gene dihydrouridine synthase 2
Tssr79203 8 106011491 to 106011526 35 + TSS region transcription start site region 79203
Tssr82750 8 106052551 to 106052563 12 - TSS region transcription start site region 82750
Tssr82751 8 106052569 to 106052581 12 - TSS region transcription start site region 82751
Tssr79204 8 106052700 to 106052711 11 + TSS region transcription start site region 79204
Tssr79205 8 106052721 to 106052748 27 + TSS region transcription start site region 79205
Tssr79206 8 106053009 to 106053028 19 + TSS region transcription start site region 79206
Tssr79207 8 106053081 to 106053098 17 + TSS region transcription start site region 79207
Tssr79208 8 106054602 to 106054611 9 + TSS region transcription start site region 79208
Tssr82752 8 106058698 to 106058706 8 - TSS region transcription start site region 82752
Tssr79209 8 106058787 to 106058834 47 + TSS region transcription start site region 79209
Tssr79210 8 106058857 to 106058870 13 + TSS region transcription start site region 79210
Cpgi20964 8 106058968 to 106060325 1357 CpG island CpG island 20964
Tssr82753 8 106059228 to 106059247 19 - TSS region transcription start site region 82753
Tssr79211 8 106059562 to 106059623 61 + TSS region transcription start site region 79211
Nfatc3 8 106059584 to 106130537 70953 + protein coding gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
Tssr79212 8 106059650 to 106059695 45 + TSS region transcription start site region 79212
Tssr79213 8 106059783 to 106059793 10 + TSS region transcription start site region 79213
Gm27956 8 106071615 to 106071874 259 - unclassified non-coding RNA gene predicted gene, 27956
Tssr79214 8 106078799 to 106078818 19 + TSS region transcription start site region 79214
Tssr79215 8 106081410 to 106081412 2 + TSS region transcription start site region 79215
Tssr82754 8 106107216 to 106107241 25 - TSS region transcription start site region 82754
Tssr79216 8 106107455 to 106107459 4 + TSS region transcription start site region 79216
Tssr79217 8 106111542 to 106111553 11 + TSS region transcription start site region 79217
Tssr79218 8 106117831 to 106117835 4 + TSS region transcription start site region 79218
Esrp2 8 106130634 to 106137006 6372 - protein coding gene epithelial splicing regulatory protein 2
Tssr82755 8 106134933 to 106134943 10 - TSS region transcription start site region 82755
Tssr82756 8 106134945 to 106134960 15 - TSS region transcription start site region 82756
1810019D21Rik 8 106135400 to 106138525 3125 + lncRNA gene RIKEN cDNA 1810019D21 gene
Tssr79219 8 106135401 to 106135431 30 + TSS region transcription start site region 79219
Tssr79220 8 106135435 to 106135457 22 + TSS region transcription start site region 79220
Tssr79221 8 106135464 to 106135480 16 + TSS region transcription start site region 79221
Tssr79222 8 106135497 to 106135512 15 + TSS region transcription start site region 79222
Tssr79223 8 106135541 to 106135570 29 + TSS region transcription start site region 79223
Cpgi20965 8 106135742 to 106137629 1887 CpG island CpG island 20965
Tssr79224 8 106135869 to 106135889 20 + TSS region transcription start site region 79224
Tssr79225 8 106135942 to 106135953 11 + TSS region transcription start site region 79225
Tssr82757 8 106136792 to 106136876 84 - TSS region transcription start site region 82757
Tssr82758 8 106136890 to 106136901 11 - TSS region transcription start site region 82758
Tssr79226 8 106137058 to 106137074 16 + TSS region transcription start site region 79226
Tssr82759 8 106137368 to 106137395 27 - TSS region transcription start site region 82759
Cpgi20966 8 106138010 to 106138407 397 CpG island CpG island 20966
Tssr79227 8 106138408 to 106138421 13 + TSS region transcription start site region 79227
Tssr79228 8 106150020 to 106150063 43 + TSS region transcription start site region 79228
Cpgi20967 8 106150078 to 106150729 651 CpG island CpG island 20967
Tssr79229 8 106150359 to 106150417 58 + TSS region transcription start site region 79229
Pla2g15 8 106150399 to 106164715 14316 + protein coding gene phospholipase A2, group XV
Tssr79230 8 106150423 to 106150438 15 + TSS region transcription start site region 79230
Tssr79231 8 106150470 to 106150481 11 + TSS region transcription start site region 79231
Tssr79232 8 106161272 to 106161283 11 + TSS region transcription start site region 79232
Tssr79233 8 106163096 to 106163117 21 + TSS region transcription start site region 79233
Cpgi20968 8 106168266 to 106169703 1437 CpG island CpG island 20968
Slc7a6 8 106168857 to 106198706 29849 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
Tssr79234 8 106168857 to 106168926 69 + TSS region transcription start site region 79234