Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105644324-105904357

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctcf 8 105636568 to 105682922 46354 + protein coding gene CCCTC-binding factor
Tssr79174 8 105649319 to 105649323 4 + TSS region transcription start site region 79174
Gm5915 8 105660334 to 105660787 453 - pseudogene predicted pseudogene 5915
Tssr79175 8 105664167 to 105664179 12 + TSS region transcription start site region 79175
Tssr2677 8 105664297 to 105664312 15 + TSS region transcription start site region 2677
Gm33578 8 105682815 to 105686220 3405 - lncRNA gene predicted gene, 33578
Cpgi20944 8 105685892 to 105686282 390 CpG island CpG island 20944
Tssr79176 8 105685987 to 105686001 14 + TSS region transcription start site region 79176
Tssr79177 8 105686027 to 105686056 29 + TSS region transcription start site region 79177
Tssr79178 8 105686146 to 105686228 82 + TSS region transcription start site region 79178
Tssr79179 8 105686231 to 105686270 39 + TSS region transcription start site region 79179
Tssr79180 8 105686273 to 105686293 20 + TSS region transcription start site region 79180
Carmil2 8 105686274 to 105698187 11913 + protein coding gene capping protein regulator and myosin 1 linker 2
Cpgi20945 8 105689308 to 105689983 675 CpG island CpG island 20945
Cpgi20946 8 105693691 to 105694710 1019 CpG island CpG island 20946
Tssr79181 8 105693826 to 105693880 54 + TSS region transcription start site region 79181
Tssr79182 8 105693926 to 105694013 87 + TSS region transcription start site region 79182
Cpgi20947 8 105695292 to 105695567 275 CpG island CpG island 20947
Acd 8 105698157 to 105701290 3133 - protein coding gene adrenocortical dysplasia
Tssr82684 8 105698807 to 105698846 39 - TSS region transcription start site region 82684
Cpgi20948 8 105700309 to 105702364 2055 CpG island CpG island 20948
Tssr82685 8 105701048 to 105701063 15 - TSS region transcription start site region 82685
Tssr82686 8 105701077 to 105701118 41 - TSS region transcription start site region 82686
Tssr79183 8 105701142 to 105701190 48 + TSS region transcription start site region 79183
Pard6a 8 105701148 to 105703494 2346 + protein coding gene par-6 family cell polarity regulator alpha
Tssr79184 8 105701624 to 105701693 69 + TSS region transcription start site region 79184
Enkd1 8 105703651 to 105708210 4559 - protein coding gene enkurin domain containing 1
Cpgi20949 8 105704120 to 105704614 494 CpG island CpG island 20949
Tssr82687 8 105704712 to 105704742 30 - TSS region transcription start site region 82687
Cpgi20950 8 105707496 to 105708203 707 CpG island CpG island 20950
Tssr82688 8 105708172 to 105708223 51 - TSS region transcription start site region 82688
Tssr79185 8 105708251 to 105708261 10 + TSS region transcription start site region 79185
Tssr79186 8 105708270 to 105708302 32 + TSS region transcription start site region 79186
4933405L10Rik 8 105708289 to 105710246 1957 + protein coding gene RIKEN cDNA 4933405L10 gene
Tssr79187 8 105708318 to 105708326 8 + TSS region transcription start site region 79187
Gfod2 8 105714046 to 105758665 44619 - protein coding gene glucose-fructose oxidoreductase domain containing 2
Cpgi20951 8 105717294 to 105717663 369 CpG island CpG island 20951
Cpgi20952 8 105758122 to 105758828 706 CpG island CpG island 20952
Tssr82689 8 105758570 to 105758657 87 - TSS region transcription start site region 82689
Ranbp10 8 105768308 to 105827350 59042 - protein coding gene RAN binding protein 10
Tssr82690 8 105771254 to 105771268 14 - TSS region transcription start site region 82690
Tssr82691 8 105774324 to 105774357 33 - TSS region transcription start site region 82691
Tssr82692 8 105816862 to 105816868 6 - TSS region transcription start site region 82692
Tssr82693 8 105817568 to 105817589 21 - TSS region transcription start site region 82693
D8Mit1005 8 105818908 to 105819220 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1005
Tssr82694 8 105826305 to 105826332 27 - TSS region transcription start site region 82694
Cpgi20953 8 105826891 to 105827904 1013 CpG island CpG island 20953
Tssr82695 8 105827190 to 105827214 24 - TSS region transcription start site region 82695
Tssr82696 8 105827593 to 105827604 11 - TSS region transcription start site region 82696
Tssr82697 8 105827617 to 105827637 20 - TSS region transcription start site region 82697
Tssr82698 8 105827642 to 105827666 24 - TSS region transcription start site region 82698
Tssr82699 8 105827680 to 105827691 11 - TSS region transcription start site region 82699
Tssr79188 8 105827721 to 105827751 30 + TSS region transcription start site region 79188
Tsnaxip1 8 105827731 to 105844680 16949 + protein coding gene translin-associated factor X (Tsnax) interacting protein 1
Tssr79189 8 105827753 to 105827769 16 + TSS region transcription start site region 79189
Tssr79190 8 105827770 to 105827773 3 + TSS region transcription start site region 79190
Gm46050 8 105830549 to 105833891 3342 - lncRNA gene predicted gene, 46050
Tssr82700 8 105833840 to 105833886 46 - TSS region transcription start site region 82700
Cenpt 8 105844673 to 105853278 8605 - protein coding gene centromere protein T
Tssr82701 8 105846745 to 105846776 31 - TSS region transcription start site region 82701
Tssr79191 8 105850834 to 105850842 8 + TSS region transcription start site region 79191
Tssr79192 8 105850857 to 105850877 20 + TSS region transcription start site region 79192
Cpgi20954 8 105851589 to 105852187 598 CpG island CpG island 20954
Tssr82702 8 105851965 to 105851979 14 - TSS region transcription start site region 82702
Tssr82703 8 105851981 to 105852036 55 - TSS region transcription start site region 82703
Cpgi20955 8 105854771 to 105856416 1645 CpG island CpG island 20955
Tssr79193 8 105855086 to 105855149 63 + TSS region transcription start site region 79193
Thap11 8 105855132 to 105856950 1818 + protein coding gene THAP domain containing 11
4930578M07Rik 8 105859303 to 105860422 1119 - unclassified gene RIKEN cDNA 4930578M07 gene
Cpgi20956 8 105860204 to 105861361 1157 CpG island CpG island 20956
Nutf2 8 105860580 to 105879330 18750 + protein coding gene nuclear transport factor 2
Tssr79194 8 105860597 to 105860608 11 + TSS region transcription start site region 79194
Tssr79195 8 105860636 to 105860661 25 + TSS region transcription start site region 79195
Tssr2678 8 105877388 to 105877405 17 + TSS region transcription start site region 2678
Cpgi20957 8 105880770 to 105881437 667 CpG island CpG island 20957
Edc4 8 105880873 to 105893225 12352 + protein coding gene enhancer of mRNA decapping 4
Tssr79196 8 105880875 to 105880939 64 + TSS region transcription start site region 79196
Tssr79197 8 105893542 to 105893576 34 + TSS region transcription start site region 79197
Nrn1l 8 105893567 to 105895023 1456 + protein coding gene neuritin 1-like
Cpgi20958 8 105900222 to 105901035 813 CpG island CpG island 20958
Tssr79198 8 105900421 to 105900467 46 + TSS region transcription start site region 79198
Pskh1 8 105900474 to 105931802 31328 + protein coding gene protein serine kinase H1
Tssr82704 8 105901153 to 105901192 39 - TSS region transcription start site region 82704