Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:10554453-11221591

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myo16 8 10153911 to 10634742 480831 + protein coding gene myosin XVI
D8Mit332 8 10616044 to 10616165 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 332
Tssr76181 8 10634749 to 10634762 13 + TSS region transcription start site region 76181
D8Mit255 8 10640866 to 10640971 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 255
Gm32330 8 10673361 to 10676646 3285 + lncRNA gene predicted gene, 32330
5330413D20Rik 8 10675348 to 10676913 1565 - lincRNA gene RIKEN cDNA 5330413D20 gene
Gm44786 8 10685351 to 10687390 2039 + lincRNA gene predicted gene 44786
Gm44785 8 10687948 to 10691706 3758 + lincRNA gene predicted gene 44785
Tssr80342 8 10695076 to 10695087 11 - TSS region transcription start site region 80342
Tssr2486 8 10705635 to 10705636 1 - TSS region transcription start site region 2486
Gm30666 8 10716707 to 10738674 21967 - pseudogene predicted gene, 30666
Gm44784 8 10723486 to 10725161 1675 + lincRNA gene predicted gene 44784
Gm45045 8 10732676 to 10736533 3857 + lincRNA gene predicted gene 45045
Gm39129 8 10738890 to 10770849 31959 + lincRNA gene predicted gene, 39129
Gm32429 8 10740250 to 10747285 7035 - lncRNA gene predicted gene, 32429
Tssr80343 8 10741001 to 10741027 26 - TSS region transcription start site region 80343
D8Mit1 8 10794081 to 10794305 224 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1
Rps16-ps3 8 10808688 to 10809128 440 - pseudogene ribosomal protein S16, pseudogene 3
Gm32485 8 10817012 to 10817721 709 - lncRNA gene predicted gene, 32485
Gm39130 8 10847429 to 10855147 7718 + lncRNA gene predicted gene, 39130
Tssr76182 8 10853411 to 10853420 9 + TSS region transcription start site region 76182
Gm32540 8 10858750 to 10866186 7436 - lincRNA gene predicted gene, 32540
Tssr80344 8 10865103 to 10865119 16 - TSS region transcription start site region 80344
Tssr80345 8 10865315 to 10865329 14 - TSS region transcription start site region 80345
Tssr80346 8 10865930 to 10865936 6 - TSS region transcription start site region 80346
Tssr80347 8 10865998 to 10866082 84 - TSS region transcription start site region 80347
D8Mit59 8 10867012 to 10867149 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59
D8Mit59.1 8 10867119 to 10867232 113 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59.1
B930025P03Rik 8 10870422 to 10882454 12032 - lincRNA gene RIKEN cDNA B930025P03 gene
Gm45044 8 10884453 to 10891591 7138 - lincRNA gene predicted gene 45044
Tssr80348 8 10892047 to 10892071 24 - TSS region transcription start site region 80348
Tssr80349 8 10892078 to 10892089 11 - TSS region transcription start site region 80349
Gm2814 8 10898169 to 10900558 2389 - lincRNA gene predicted gene 2814
Tssr76183 8 10899915 to 10899928 13 + TSS region transcription start site region 76183
4833411C07Rik 8 10899922 to 10902334 2412 + lncRNA gene RIKEN cDNA 4833411C07 gene
Tssr76184 8 10899947 to 10899956 9 + TSS region transcription start site region 76184
Tssr80350 8 10900540 to 10900563 23 - TSS region transcription start site region 80350
Tssr76185 8 10902046 to 10902061 15 + TSS region transcription start site region 76185
Gm32594 8 10919619 to 10921084 1465 - lncRNA gene predicted gene, 32594
D8Ertd130e 8 10920252 to 10920451 199 DNA segment DNA segment, Chr 8, ERATO Doi 130, expressed
3930402G23Rik 8 10924427 to 10928457 4030 - lincRNA gene RIKEN cDNA 3930402G23 gene
Tssr80351 8 10928449 to 10928464 15 - TSS region transcription start site region 80351
Gm45042 8 10929887 to 10930097 210 + pseudogene predicted gene 45042
D8Mit286 8 10939167 to 10939280 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 286
Gm44955 8 10943326 to 10947890 4564 - lincRNA gene predicted gene 44955
Cpgi20077 8 10946190 to 10946379 189 CpG island CpG island 20077
Tssr80352 8 10947806 to 10947820 14 - TSS region transcription start site region 80352
Tssr80353 8 10947821 to 10947845 24 - TSS region transcription start site region 80353
Tssr80354 8 10947853 to 10947862 9 - TSS region transcription start site region 80354
Gm44956 8 10962957 to 10970814 7857 - lincRNA gene predicted gene 44956
Cpgi20078 8 10978500 to 10978819 319 CpG island CpG island 20078
Irs2 8 10986961 to 11008430 21469 - protein coding gene insulin receptor substrate 2
Cpgi20079 8 11004495 to 11004761 266 CpG island CpG island 20079
Tssr80355 8 11006242 to 11006246 4 - TSS region transcription start site region 80355
Cpgi20080 8 11006577 to 11010093 3516 CpG island CpG island 20080
Tssr80356 8 11006711 to 11006725 14 - TSS region transcription start site region 80356
Tssr76186 8 11007429 to 11007466 37 + TSS region transcription start site region 76186
9530052E02Rik 8 11007850 to 11054541 46691 + lncRNA gene RIKEN cDNA 9530052E02 gene
Tssr80357 8 11007951 to 11007979 28 - TSS region transcription start site region 80357
Tssr80358 8 11008230 to 11008243 13 - TSS region transcription start site region 80358
Tssr80359 8 11008894 to 11008905 11 - TSS region transcription start site region 80359
Tssr80360 8 11008913 to 11008936 23 - TSS region transcription start site region 80360
Tssr80361 8 11008941 to 11008973 32 - TSS region transcription start site region 80361
Tssr76187 8 11009177 to 11009197 20 + TSS region transcription start site region 76187
Tssr80362 8 11009461 to 11009499 38 - TSS region transcription start site region 80362
Tssr80363 8 11016290 to 11016301 11 - TSS region transcription start site region 80363
Tssr76188 8 11036227 to 11036239 12 + TSS region transcription start site region 76188
B830042I05Rik 8 11071046 to 11076881 5835 + lincRNA gene RIKEN cDNA B830042I05 gene
Tssr76189 8 11071465 to 11071479 14 + TSS region transcription start site region 76189
Tssr76190 8 11098965 to 11098983 18 + TSS region transcription start site region 76190
Gm44714 8 11116555 to 11117373 818 + lincRNA gene predicted gene 44714
Gm44717 8 11135641 to 11149246 13605 - lincRNA gene predicted gene 44717
Tssr76191 8 11175221 to 11175225 4 + TSS region transcription start site region 76191
Tssr80364 8 11183699 to 11183703 4 - TSS region transcription start site region 80364
Cpgi20081 8 11187661 to 11188458 797 CpG island CpG island 20081
Gm15418 8 11187755 to 11204503 16748 + antisense lncRNA gene predicted gene 15418
Col4a1 8 11198423 to 11312826 114403 - protein coding gene collagen, type IV, alpha 1
D0Nds29 8 11199100 to 11199218 118 DNA segment DNA segment, Nuffield Department of Surgery 29
Tssr80365 8 11199340 to 11199353 13 - TSS region transcription start site region 80365
Tssr80366 8 11199735 to 11199776 41 - TSS region transcription start site region 80366
Tssr80367 8 11201784 to 11201806 22 - TSS region transcription start site region 80367
Tssr80368 8 11202991 to 11203009 18 - TSS region transcription start site region 80368
Tssr80369 8 11211573 to 11211577 4 - TSS region transcription start site region 80369
Tssr76192 8 11217945 to 11217970 25 + TSS region transcription start site region 76192
Tssr80370 8 11218764 to 11218769 5 - TSS region transcription start site region 80370
Tssr80371 8 11219189 to 11219201 12 - TSS region transcription start site region 80371
Tssr80372 8 11221377 to 11221392 15 - TSS region transcription start site region 80372