Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105322492-105616422

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc29 8 105312340 to 105326339 13999 - protein coding gene leucine rich repeat containing 29
Tssr82642 8 105323320 to 105323336 16 - TSS region transcription start site region 82642
Tssr79133 8 105323439 to 105323450 11 + TSS region transcription start site region 79133
Cpgi20926 8 105325846 to 105326866 1020 CpG island CpG island 20926
Tssr82643 8 105326252 to 105326278 26 - TSS region transcription start site region 82643
Tssr82644 8 105326281 to 105326301 20 - TSS region transcription start site region 82644
Tmem208 8 105326354 to 105335219 8865 + protein coding gene transmembrane protein 208
Tssr79134 8 105326354 to 105326411 57 + TSS region transcription start site region 79134
Tssr79135 8 105326419 to 105326441 22 + TSS region transcription start site region 79135
Fhod1 8 105329163 to 105347953 18790 - protein coding gene formin homology 2 domain containing 1
Cpgi20927 8 105336406 to 105336972 566 CpG island CpG island 20927
Gm46049 8 105344210 to 105347645 3435 + lncRNA gene predicted gene, 46049
Tssr79136 8 105345339 to 105345342 3 + TSS region transcription start site region 79136
Cpgi20928 8 105346898 to 105347281 383 CpG island CpG island 20928
Cpgi20929 8 105347460 to 105348177 717 CpG island CpG island 20929
Tssr82645 8 105347885 to 105347940 55 - TSS region transcription start site region 82645
Tssr82646 8 105347941 to 105347975 34 - TSS region transcription start site region 82646
Tssr79137 8 105348092 to 105348099 7 + TSS region transcription start site region 79137
Tssr79138 8 105348163 to 105348190 27 + TSS region transcription start site region 79138
Cpgi20930 8 105348676 to 105349870 1194 CpG island CpG island 20930
Slc9a5 8 105348843 to 105369881 21038 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 5
Tssr82647 8 105349210 to 105349222 12 - TSS region transcription start site region 82647
Tssr82648 8 105349223 to 105349234 11 - TSS region transcription start site region 82648
Tssr82649 8 105349250 to 105349269 19 - TSS region transcription start site region 82649
Tssr79139 8 105349295 to 105349369 74 + TSS region transcription start site region 79139
Tssr79140 8 105373265 to 105373277 12 + TSS region transcription start site region 79140
Plekhg4 8 105373274 to 105382862 9588 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 4
Cpgi20931 8 105374453 to 105375172 719 CpG island CpG island 20931
Kctd19 8 105382807 to 105413502 30695 - protein coding gene potassium channel tetramerisation domain containing 19
Tssr82650 8 105403811 to 105403813 2 - TSS region transcription start site region 82650
Cpgi20932 8 105413302 to 105413842 540 CpG island CpG island 20932
Tssr82651 8 105413459 to 105413465 6 - TSS region transcription start site region 82651
Tssr82652 8 105413473 to 105413526 53 - TSS region transcription start site region 82652
Lrrc36 8 105413608 to 105464086 50478 + protein coding gene leucine rich repeat containing 36
Tssr79141 8 105413614 to 105413631 17 + TSS region transcription start site region 79141
Tssr79142 8 105427587 to 105427619 32 + TSS region transcription start site region 79142
Tssr79143 8 105427622 to 105427633 11 + TSS region transcription start site region 79143
Tssr79144 8 105427634 to 105427646 12 + TSS region transcription start site region 79144
Tssr79145 8 105427648 to 105427672 24 + TSS region transcription start site region 79145
Tssr79146 8 105438802 to 105438807 5 + TSS region transcription start site region 79146
Tssr79147 8 105453562 to 105453566 4 + TSS region transcription start site region 79147
Tssr79148 8 105455276 to 105455287 11 + TSS region transcription start site region 79148
Tppp3 8 105467492 to 105471422 3930 - protein coding gene tubulin polymerization-promoting protein family member 3
Cpgi20933 8 105467888 to 105468631 743 CpG island CpG island 20933
Tssr82653 8 105467905 to 105467934 29 - TSS region transcription start site region 82653
Cpgi20934 8 105471153 to 105471620 467 CpG island CpG island 20934
Tssr82654 8 105471328 to 105471343 15 - TSS region transcription start site region 82654
Tssr82655 8 105471383 to 105471400 17 - TSS region transcription start site region 82655
Tssr82656 8 105471447 to 105471458 11 - TSS region transcription start site region 82656
Tssr82657 8 105471481 to 105471487 6 - TSS region transcription start site region 82657
Zdhhc1 8 105472423 to 105496902 24479 - protein coding gene zinc finger, DHHC domain containing 1
Cpgi20935 8 105472461 to 105472741 280 CpG island CpG island 20935
Tssr82658 8 105482848 to 105482861 13 - TSS region transcription start site region 82658
Tssr82659 8 105494659 to 105494675 16 - TSS region transcription start site region 82659
Cpgi20936 8 105496494 to 105497314 820 CpG island CpG island 20936
Tssr82660 8 105496975 to 105496982 7 - TSS region transcription start site region 82660
Tssr82661 8 105497023 to 105497068 45 - TSS region transcription start site region 82661
Tssr82662 8 105497089 to 105497094 5 - TSS region transcription start site region 82662
Tssr79149 8 105503198 to 105503202 4 + TSS region transcription start site region 79149
Gm8838 8 105503406 to 105503946 540 + pseudogene predicted gene 8838
Cpgi20937 8 105518339 to 105519327 988 CpG island CpG island 20937
Tssr79150 8 105518736 to 105518753 17 + TSS region transcription start site region 79150
Hsd11b2 8 105518755 to 105523988 5233 + protein coding gene hydroxysteroid 11-beta dehydrogenase 2
Tssr79151 8 105518884 to 105518917 33 + TSS region transcription start site region 79151
Tssr79152 8 105518929 to 105518947 18 + TSS region transcription start site region 79152
Atp6v0d1 8 105524470 to 105566040 41570 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit D1
Tssr82663 8 105525357 to 105525371 14 - TSS region transcription start site region 82663
Tssr82664 8 105525380 to 105525394 14 - TSS region transcription start site region 82664
Tssr82665 8 105529376 to 105529415 39 - TSS region transcription start site region 82665
D8Mit198 8 105541565 to 105541762 197 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 198
Tssr82666 8 105549621 to 105549640 19 - TSS region transcription start site region 82666
D8Dcr39 8 105561758 to 105561859 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 39
Cpgi20938 8 105565355 to 105567089 1734 CpG island CpG island 20938
Tssr82667 8 105565906 to 105565914 8 - TSS region transcription start site region 82667
Tssr82668 8 105565921 to 105565947 26 - TSS region transcription start site region 82668
Tssr82669 8 105565957 to 105565982 25 - TSS region transcription start site region 82669
Tssr82670 8 105565985 to 105566071 86 - TSS region transcription start site region 82670
Tssr79153 8 105566171 to 105566187 16 + TSS region transcription start site region 79153
Gm38250 8 105566324 to 105578109 11785 + antisense lncRNA gene predicted gene, 38250
Agrp 8 105566695 to 105579845 13150 - protein coding gene agouti related neuropeptide
Tssr82671 8 105567632 to 105567648 16 - TSS region transcription start site region 82671
Tssr82672 8 105579855 to 105579864 9 - TSS region transcription start site region 82672
Gm45855 8 105585321 to 105586200 879 - pseudogene predicted gene 45855
Tssr79154 8 105594069 to 105594088 19 + TSS region transcription start site region 79154
Tssr79155 8 105595093 to 105595102 9 + TSS region transcription start site region 79155
Tssr79156 8 105595134 to 105595156 22 + TSS region transcription start site region 79156
Tssr79157 8 105595194 to 105595203 9 + TSS region transcription start site region 79157
Tssr79158 8 105602824 to 105602826 2 + TSS region transcription start site region 79158
Cpgi20939 8 105604667 to 105606026 1359 CpG island CpG island 20939
Tssr79159 8 105605022 to 105605040 18 + TSS region transcription start site region 79159
Tssr79160 8 105605041 to 105605056 15 + TSS region transcription start site region 79160
Tssr79161 8 105605220 to 105605306 86 + TSS region transcription start site region 79161
Ripor1 8 105605255 to 105622219 16964 + protein coding gene RHO family interacting cell polarization regulator 1
Cpgi20940 8 105606502 to 105606719 217 CpG island CpG island 20940
Tssr82673 8 105606682 to 105606693 11 - TSS region transcription start site region 82673
Tssr82674 8 105606698 to 105606710 12 - TSS region transcription start site region 82674
Cpgi20941 8 105613195 to 105613562 367 CpG island CpG island 20941
Tssr79162 8 105613226 to 105613243 17 + TSS region transcription start site region 79162
Tssr79163 8 105613246 to 105613266 20 + TSS region transcription start site region 79163
Cpgi20942 8 105613822 to 105614614 792 CpG island CpG island 20942
Mir1966 8 105615466 to 105615573 107 + miRNA gene microRNA 1966