Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105205395-105336166

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cbfb 8 105170674 to 105217989 47315 + protein coding gene core binding factor beta
Tssr79109 8 105216736 to 105216753 17 + TSS region transcription start site region 79109
D8Ertd28e 8 105224049 to 105224258 209 DNA segment DNA segment, Chr 8, ERATO Doi 28, expressed
Cpgi20913 8 105224728 to 105225655 927 CpG island CpG island 20913
D230025D16Rik 8 105225146 to 105253053 27907 + protein coding gene RIKEN cDNA D230025D16 gene
Tssr79110 8 105225170 to 105225193 23 + TSS region transcription start site region 79110
Tssr79111 8 105225197 to 105225222 25 + TSS region transcription start site region 79111
Tssr79112 8 105225336 to 105225345 9 + TSS region transcription start site region 79112
Tssr79113 8 105226818 to 105226822 4 + TSS region transcription start site region 79113
B3gnt9 8 105252638 to 105255153 2515 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Cpgi20914 8 105253601 to 105255233 1632 CpG island CpG island 20914
Tssr82627 8 105255100 to 105255157 57 - TSS region transcription start site region 82627
Tradd 8 105258575 to 105264594 6019 - protein coding gene TNFRSF1A-associated via death domain
Cpgi20915 8 105258758 to 105260128 1370 CpG island CpG island 20915
Cpgi20916 8 105264191 to 105264843 652 CpG island CpG island 20916
Tssr82628 8 105264578 to 105264585 7 - TSS region transcription start site region 82628
Tssr82629 8 105264586 to 105264618 32 - TSS region transcription start site region 82629
Fbxl8 8 105264648 to 105269326 4678 + protein coding gene F-box and leucine-rich repeat protein 8
Tssr79114 8 105264656 to 105264697 41 + TSS region transcription start site region 79114
Cpgi20917 8 105268085 to 105270274 2189 CpG island CpG island 20917
Tssr79115 8 105269788 to 105269836 48 + TSS region transcription start site region 79115
Hsf4 8 105269801 to 105275845 6044 + protein coding gene heat shock transcription factor 4
Tssr79116 8 105269837 to 105269857 20 + TSS region transcription start site region 79116
Cpgi20918 8 105270395 to 105271166 771 CpG island CpG island 20918
Tssr79117 8 105272071 to 105272088 17 + TSS region transcription start site region 79117
Nol3 8 105276140 to 105281939 5799 + protein coding gene nucleolar protein 3 (apoptosis repressor with CARD domain)
Cpgi20919 8 105276240 to 105276706 466 CpG island CpG island 20919
Tssr79118 8 105276383 to 105276426 43 + TSS region transcription start site region 79118
Tssr79119 8 105276432 to 105276436 4 + TSS region transcription start site region 79119
Tssr79120 8 105276438 to 105276482 44 + TSS region transcription start site region 79120
Cpgi20920 8 105278817 to 105279676 859 CpG island CpG island 20920
Tssr79121 8 105279325 to 105279345 20 + TSS region transcription start site region 79121
Tssr79122 8 105279363 to 105279374 11 + TSS region transcription start site region 79122
4931428F04Rik 8 105280409 to 105289528 9119 - protein coding gene RIKEN cDNA 4931428F04 gene
Tssr82630 8 105281425 to 105281440 15 - TSS region transcription start site region 82630
Tssr82631 8 105281490 to 105281508 18 - TSS region transcription start site region 82631
Cpgi20921 8 105283029 to 105283483 454 CpG island CpG island 20921
Tssr82632 8 105283213 to 105283236 23 - TSS region transcription start site region 82632
Tssr82633 8 105283238 to 105283276 38 - TSS region transcription start site region 82633
Cpgi20922 8 105288890 to 105291115 2225 CpG island CpG island 20922
Tssr82634 8 105289068 to 105289083 15 - TSS region transcription start site region 82634
Tssr82635 8 105289084 to 105289114 30 - TSS region transcription start site region 82635
Tssr82636 8 105289120 to 105289138 18 - TSS region transcription start site region 82636
Tssr82637 8 105289465 to 105289541 76 - TSS region transcription start site region 82637
Tssr82638 8 105289875 to 105289886 11 - TSS region transcription start site region 82638
Exoc3l 8 105289924 to 105296101 6177 - protein coding gene exocyst complex component 3-like
Tssr79123 8 105289983 to 105290009 26 + TSS region transcription start site region 79123
Gm20163 8 105290471 to 105291443 972 + antisense lncRNA gene predicted gene, 20163
Cpgi20923 8 105293196 to 105293780 584 CpG island CpG island 20923
Tssr82639 8 105295934 to 105295948 14 - TSS region transcription start site region 82639
Tssr82640 8 105296044 to 105296110 66 - TSS region transcription start site region 82640
A930018C05Rik 8 105297221 to 105297617 396 unclassified gene RIKEN cDNA A930018C05 gene
Cpgi20924 8 105297439 to 105298418 979 CpG island CpG island 20924
E2f4 8 105297663 to 105305370 7707 + protein coding gene E2F transcription factor 4
Tssr79124 8 105297663 to 105297742 79 + TSS region transcription start site region 79124
Tssr79125 8 105300235 to 105300277 42 + TSS region transcription start site region 79125
Tssr79126 8 105300395 to 105300446 51 + TSS region transcription start site region 79126
Tssr79127 8 105302548 to 105302552 4 + TSS region transcription start site region 79127
Tssr79128 8 105304095 to 105304104 9 + TSS region transcription start site region 79128
Tssr79129 8 105304127 to 105304144 17 + TSS region transcription start site region 79129
Tssr79130 8 105304568 to 105304597 29 + TSS region transcription start site region 79130
Tssr79131 8 105304746 to 105304772 26 + TSS region transcription start site region 79131
Elmo3 8 105305550 to 105310623 5073 + protein coding gene engulfment and cell motility 3
Tssr79132 8 105305572 to 105305619 47 + TSS region transcription start site region 79132
Cpgi20925 8 105305606 to 105305862 256 CpG island CpG island 20925
Gm27320 8 105307792 to 105307900 108 - miRNA gene predicted gene, 27320
Mir328 8 105308364 to 105308460 96 - miRNA gene microRNA 328
Lrrc29 8 105312340 to 105326339 13999 - protein coding gene leucine rich repeat containing 29
Tssr82641 8 105322346 to 105322351 5 - TSS region transcription start site region 82641
Tssr82642 8 105323320 to 105323336 16 - TSS region transcription start site region 82642
Tssr79133 8 105323439 to 105323450 11 + TSS region transcription start site region 79133
Cpgi20926 8 105325846 to 105326866 1020 CpG island CpG island 20926
Tssr82643 8 105326252 to 105326278 26 - TSS region transcription start site region 82643
Tssr82644 8 105326281 to 105326301 20 - TSS region transcription start site region 82644
Tmem208 8 105326354 to 105335219 8865 + protein coding gene transmembrane protein 208
Tssr79134 8 105326354 to 105326411 57 + TSS region transcription start site region 79134
Tssr79135 8 105326419 to 105326441 22 + TSS region transcription start site region 79135
Fhod1 8 105329163 to 105347953 18790 - protein coding gene formin homology 2 domain containing 1