Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:104347240-108217247

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775 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cmtm3 8 104339410 to 104347672 8262 + protein coding gene CKLF-like MARVEL transmembrane domain containing 3
Tssr79060 8 104347459 to 104347472 13 + TSS region transcription start site region 79060
Cmtm4 8 104348191 to 104395807 47616 - protein coding gene CKLF-like MARVEL transmembrane domain containing 4
Gm45877 8 104362602 to 104363668 1066 - sense intronic lncRNA gene predicted gene 45877
Cpgi20900 8 104394959 to 104396318 1359 CpG island CpG island 20900
Tssr82601 8 104395765 to 104395858 93 - TSS region transcription start site region 82601
Tssr82602 8 104395873 to 104395886 13 - TSS region transcription start site region 82602
Dync1li2 8 104417680 to 104443047 25367 - protein coding gene dynein, cytoplasmic 1 light intermediate chain 2
Tssr79061 8 104430724 to 104430727 3 + TSS region transcription start site region 79061
Cpgi20901 8 104436014 to 104436244 230 CpG island CpG island 20901
Tssr82603 8 104437639 to 104437657 18 - TSS region transcription start site region 82603
Gm45731 8 104438260 to 104439462 1202 + unclassified gene predicted gene 45731
Tssr82604 8 104441608 to 104441609 1 - TSS region transcription start site region 82604
Cpgi20902 8 104442044 to 104443145 1101 CpG island CpG island 20902
K230015D01Rik 8 104442271 to 104443786 1515 + antisense lncRNA gene RIKEN cDNA K230015D01 gene
Tssr82605 8 104442804 to 104442836 32 - TSS region transcription start site region 82605
Tssr82606 8 104442902 to 104442920 18 - TSS region transcription start site region 82606
Tssr2675 8 104442928 to 104442935 7 - TSS region transcription start site region 2675
Tssr82607 8 104442944 to 104442955 11 - TSS region transcription start site region 82607
Tssr82608 8 104442971 to 104442976 5 - TSS region transcription start site region 82608
Tssr82609 8 104443001 to 104443025 24 - TSS region transcription start site region 82609
Tssr82610 8 104443033 to 104443044 11 - TSS region transcription start site region 82610
Terb1 8 104446718 to 104509887 63169 - protein coding gene telomere repeat binding bouquet formation protein 1
Gm22148 8 104507902 to 104508008 106 + snRNA gene predicted gene, 22148
Cpgi20903 8 104509072 to 104510072 1000 CpG island CpG island 20903
Tssr82611 8 104509874 to 104509894 20 - TSS region transcription start site region 82611
Nae1 8 104511028 to 104534637 23609 - protein coding gene NEDD8 activating enzyme E1 subunit 1
Cpgi20904 8 104534054 to 104534798 744 CpG island CpG island 20904
Tssr82612 8 104534568 to 104534624 56 - TSS region transcription start site region 82612
Tssr82613 8 104534630 to 104534646 16 - TSS region transcription start site region 82613
Car7 8 104534694 to 104550347 15653 + protein coding gene carbonic anhydrase 7
Tssr79062 8 104535053 to 104535081 28 + TSS region transcription start site region 79062
Cpgi20905 8 104540550 to 104541763 1213 CpG island CpG island 20905
Tssr79063 8 104540770 to 104540784 14 + TSS region transcription start site region 79063
Tssr79064 8 104540800 to 104540816 16 + TSS region transcription start site region 79064
Tssr79065 8 104540822 to 104540835 13 + TSS region transcription start site region 79065
Cpgi20906 8 104542085 to 104542383 298 CpG island CpG island 20906
Tssr82614 8 104549988 to 104550014 26 - TSS region transcription start site region 82614
Gm45843 8 104551907 to 104556987 5080 - lincRNA gene predicted gene 45843
Gm6825 8 104577591 to 104577796 205 - pseudogene predicted gene 6825
Cpgi20907 8 104591250 to 104591948 698 CpG island CpG island 20907
Tssr79066 8 104591440 to 104591454 14 + TSS region transcription start site region 79066
Tssr79067 8 104591464 to 104591505 41 + TSS region transcription start site region 79067
Pdp2 8 104591468 to 104599026 7558 + protein coding gene pyruvate dehyrogenase phosphatase catalytic subunit 2
Tssr79068 8 104591510 to 104591520 10 + TSS region transcription start site region 79068
Tssr79069 8 104595356 to 104595361 5 + TSS region transcription start site region 79069
Cdh16 8 104601915 to 104624396 22481 - protein coding gene cadherin 16
Tssr82615 8 104609341 to 104609362 21 - TSS region transcription start site region 82615
Tssr82616 8 104609364 to 104609375 11 - TSS region transcription start site region 82616
Tssr82617 8 104623901 to 104623913 12 - TSS region transcription start site region 82617
Tssr82618 8 104624188 to 104624203 15 - TSS region transcription start site region 82618
Tssr82619 8 104624210 to 104624239 29 - TSS region transcription start site region 82619
Tssr82620 8 104624249 to 104624262 13 - TSS region transcription start site region 82620
Tssr82621 8 104624266 to 104624306 40 - TSS region transcription start site region 82621
Tssr79070 8 104624511 to 104624518 7 + TSS region transcription start site region 79070
Tssr79071 8 104624522 to 104624533 11 + TSS region transcription start site region 79071
Tssr79072 8 104624566 to 104624576 10 + TSS region transcription start site region 79072
Rrad 8 104628070 to 104631327 3257 - protein coding gene Ras-related associated with diabetes
Cpgi20908 8 104630428 to 104631455 1027 CpG island CpG island 20908
Tssr82622 8 104631281 to 104631295 14 - TSS region transcription start site region 82622
Tssr82623 8 104631312 to 104631319 7 - TSS region transcription start site region 82623
Gm33023 8 104631400 to 104635841 4441 + antisense lncRNA gene predicted gene, 33023
Ciao2b 8 104639839 to 104641728 1889 - protein coding gene cytosolic iron-sulfur assembly component 2B
Cpgi20909 8 104640792 to 104642297 1505 CpG island CpG island 20909
Tssr82624 8 104641666 to 104641736 70 - TSS region transcription start site region 82624
1700082M22Rik 8 104641807 to 104658558 16751 + antisense lncRNA gene RIKEN cDNA 1700082M22 gene
Tlm 8 104661827 to 104665081 3254 unclassified gene T lymphoma oncogene
Gm7208 8 104675318 to 104681600 6282 - pseudogene predicted gene 7208
Gm5159 8 104701705 to 104707621 5916 - pseudogene predicted gene 5159
Tssr82625 8 104708269 to 104708272 3 - TSS region transcription start site region 82625
Gm44328 8 104709372 to 104709446 74 - miRNA gene predicted gene, 44328
9230110F11Rik 8 104711249 to 104718260 7011 + unclassified gene RIKEN cDNA 9230110F11 gene
Tssr79073 8 104733997 to 104734024 27 + TSS region transcription start site region 79073
Ces2a 8 104734003 to 104741634 7631 + protein coding gene carboxylesterase 2A
Tssr79074 8 104755710 to 104755713 3 + TSS region transcription start site region 79074
Gm6831 8 104755779 to 104764069 8290 + pseudogene predicted gene 6831
Gm18475 8 104757654 to 104758506 852 - pseudogene predicted gene, 18475
Gm45782 8 104785828 to 104787612 1784 + pseudogene predicted gene 45782
4932416K20Rik 8 104794802 to 104798787 3985 + lincRNA gene RIKEN cDNA 4932416K20 gene
Tssr2676 8 104795236 to 104795238 2 + TSS region transcription start site region 2676
Ces2b 8 104831572 to 104840093 8521 + protein coding gene carboxyesterase 2B
Tssr79075 8 104831591 to 104831598 7 + TSS region transcription start site region 79075
Tssr79076 8 104831601 to 104831609 8 + TSS region transcription start site region 79076
Tssr79077 8 104831634 to 104831666 32 + TSS region transcription start site region 79077
Tssr79078 8 104842038 to 104842044 6 + TSS region transcription start site region 79078
Gm33715 8 104844370 to 104845927 1557 - pseudogene predicted gene, 33715
Matr3-ps2 8 104845636 to 104846879 1243 - pseudogene matrin 3, pseudogene 2
Tssr79079 8 104847061 to 104847079 18 + TSS region transcription start site region 79079
Ces2c 8 104847068 to 104854483 7415 + protein coding gene carboxylesterase 2C
Gm33218 8 104853178 to 104868998 15820 - lncRNA gene predicted gene, 33218
Ces2d-ps 8 104867488 to 104873861 6373 + pseudogene carboxylesterase 2D, pseudogene
Gm33141 8 104869099 to 104888372 19273 - lncRNA gene predicted gene, 33141
Gm8798 8 104886798 to 104901075 14277 + pseudogene predicted gene 8798
Tssr79080 8 104926215 to 104926227 12 + TSS region transcription start site region 79080
Tssr79081 8 104926237 to 104926291 54 + TSS region transcription start site region 79081
Ces2e 8 104926260 to 104934672 8412 + protein coding gene carboxylesterase 2E
Tssr79082 8 104926292 to 104926303 11 + TSS region transcription start site region 79082
Tssr79083 8 104926304 to 104926315 11 + TSS region transcription start site region 79083
Tssr79084 8 104947339 to 104947344 5 + TSS region transcription start site region 79084
Tssr79085 8 104947348 to 104947363 15 + TSS region transcription start site region 79085
Ces2f 8 104947356 to 104960047 12691 + protein coding gene carboxylesterase 2F
Tssr79086 8 104961713 to 104961786 73 + TSS region transcription start site region 79086
Ces2g 8 104961718 to 104969537 7819 + protein coding gene carboxylesterase 2G
Tssr79087 8 104961787 to 104961798 11 + TSS region transcription start site region 79087
Tssr79088 8 104962438 to 104962487 49 + TSS region transcription start site region 79088
Tssr79089 8 104972697 to 104972703 6 + TSS region transcription start site region 79089
Gm5743 8 104987130 to 104996811 9681 + pseudogene predicted gene 5743
Tssr79090 8 105000824 to 105000832 8 + TSS region transcription start site region 79090
Ces2h 8 105000853 to 105020410 19557 + protein coding gene carboxylesterase 2H
Gm45725 8 105045166 to 105045502 336 + pseudogene predicted gene 45725
Tssr79091 8 105048592 to 105048608 16 + TSS region transcription start site region 79091
Ces3a 8 105048601 to 105058413 9812 + protein coding gene carboxylesterase 3A
Gm45724 8 105051049 to 105051468 419 - unclassified gene predicted gene 45724
Tssr79092 8 105083619 to 105083622 3 + TSS region transcription start site region 79092
Tssr79093 8 105083753 to 105083757 4 + TSS region transcription start site region 79093
Ces3b 8 105083753 to 105093929 10176 + protein coding gene carboxylesterase 3B
Tssr79094 8 105104843 to 105104846 3 + TSS region transcription start site region 79094
Gm8804 8 105110624 to 105111421 797 + pseudogene predicted gene 8804
Ces4a 8 105131800 to 105150109 18309 + protein coding gene carboxylesterase 4A
Tssr79095 8 105131823 to 105131830 7 + TSS region transcription start site region 79095
Tssr79096 8 105131851 to 105131856 5 + TSS region transcription start site region 79096
Tssr79097 8 105131876 to 105131879 3 + TSS region transcription start site region 79097
Tssr79098 8 105131891 to 105131903 12 + TSS region transcription start site region 79098
Cpgi20910 8 105142373 to 105142893 520 CpG island CpG island 20910
Cpgi20911 8 105152873 to 105153332 459 CpG island CpG island 20911
Gm3830 8 105164587 to 105170367 5780 + lincRNA gene predicted gene 3830
Cpgi20912 8 105170208 to 105171861 1653 CpG island CpG island 20912
Tssr79099 8 105170668 to 105170686 18 + TSS region transcription start site region 79099
Cbfb 8 105170674 to 105217989 47315 + protein coding gene core binding factor beta
Tssr79100 8 105170696 to 105170719 23 + TSS region transcription start site region 79100
Tssr79101 8 105170728 to 105170759 31 + TSS region transcription start site region 79101
Tssr79102 8 105170761 to 105170813 52 + TSS region transcription start site region 79102
Tssr79103 8 105170842 to 105170923 81 + TSS region transcription start site region 79103
Tssr82626 8 105171441 to 105171454 13 - TSS region transcription start site region 82626
Tssr79104 8 105171550 to 105171569 19 + TSS region transcription start site region 79104
Gm22063 8 105172496 to 105172602 106 + snRNA gene predicted gene, 22063
Tssr79105 8 105174256 to 105174261 5 + TSS region transcription start site region 79105
Tssr79106 8 105175367 to 105175385 18 + TSS region transcription start site region 79106
Tssr79107 8 105178469 to 105178486 17 + TSS region transcription start site region 79107
Tssr79108 8 105178496 to 105178510 14 + TSS region transcription start site region 79108
AI225912 8 105198056 to 105201427 3371 + DNA segment expressed sequence AI225912
Gm24629 8 105203993 to 105204081 88 + unclassified non-coding RNA gene predicted gene, 24629
Tssr79109 8 105216736 to 105216753 17 + TSS region transcription start site region 79109
D8Ertd28e 8 105224049 to 105224258 209 DNA segment DNA segment, Chr 8, ERATO Doi 28, expressed
Cpgi20913 8 105224728 to 105225655 927 CpG island CpG island 20913
D230025D16Rik 8 105225146 to 105253053 27907 + protein coding gene RIKEN cDNA D230025D16 gene
Tssr79110 8 105225170 to 105225193 23 + TSS region transcription start site region 79110
Tssr79111 8 105225197 to 105225222 25 + TSS region transcription start site region 79111
Tssr79112 8 105225336 to 105225345 9 + TSS region transcription start site region 79112
Tssr79113 8 105226818 to 105226822 4 + TSS region transcription start site region 79113
B3gnt9 8 105252638 to 105255153 2515 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Cpgi20914 8 105253601 to 105255233 1632 CpG island CpG island 20914
Tssr82627 8 105255100 to 105255157 57 - TSS region transcription start site region 82627
Tradd 8 105258575 to 105264594 6019 - protein coding gene TNFRSF1A-associated via death domain
Cpgi20915 8 105258758 to 105260128 1370 CpG island CpG island 20915
Cpgi20916 8 105264191 to 105264843 652 CpG island CpG island 20916
Tssr82628 8 105264578 to 105264585 7 - TSS region transcription start site region 82628
Tssr82629 8 105264586 to 105264618 32 - TSS region transcription start site region 82629
Fbxl8 8 105264648 to 105269326 4678 + protein coding gene F-box and leucine-rich repeat protein 8
Tssr79114 8 105264656 to 105264697 41 + TSS region transcription start site region 79114
Cpgi20917 8 105268085 to 105270274 2189 CpG island CpG island 20917
Tssr79115 8 105269788 to 105269836 48 + TSS region transcription start site region 79115
Hsf4 8 105269801 to 105275845 6044 + protein coding gene heat shock transcription factor 4
Tssr79116 8 105269837 to 105269857 20 + TSS region transcription start site region 79116
Cpgi20918 8 105270395 to 105271166 771 CpG island CpG island 20918
Tssr79117 8 105272071 to 105272088 17 + TSS region transcription start site region 79117
Nol3 8 105276140 to 105281939 5799 + protein coding gene nucleolar protein 3 (apoptosis repressor with CARD domain)
Cpgi20919 8 105276240 to 105276706 466 CpG island CpG island 20919
Tssr79118 8 105276383 to 105276426 43 + TSS region transcription start site region 79118
Tssr79119 8 105276432 to 105276436 4 + TSS region transcription start site region 79119
Tssr79120 8 105276438 to 105276482 44 + TSS region transcription start site region 79120
Cpgi20920 8 105278817 to 105279676 859 CpG island CpG island 20920
Tssr79121 8 105279325 to 105279345 20 + TSS region transcription start site region 79121
Tssr79122 8 105279363 to 105279374 11 + TSS region transcription start site region 79122
4931428F04Rik 8 105280409 to 105289528 9119 - protein coding gene RIKEN cDNA 4931428F04 gene
Tssr82630 8 105281425 to 105281440 15 - TSS region transcription start site region 82630
Tssr82631 8 105281490 to 105281508 18 - TSS region transcription start site region 82631
Cpgi20921 8 105283029 to 105283483 454 CpG island CpG island 20921
Tssr82632 8 105283213 to 105283236 23 - TSS region transcription start site region 82632
Tssr82633 8 105283238 to 105283276 38 - TSS region transcription start site region 82633
Cpgi20922 8 105288890 to 105291115 2225 CpG island CpG island 20922
Tssr82634 8 105289068 to 105289083 15 - TSS region transcription start site region 82634
Tssr82635 8 105289084 to 105289114 30 - TSS region transcription start site region 82635
Tssr82636 8 105289120 to 105289138 18 - TSS region transcription start site region 82636
Tssr82637 8 105289465 to 105289541 76 - TSS region transcription start site region 82637
Tssr82638 8 105289875 to 105289886 11 - TSS region transcription start site region 82638
Exoc3l 8 105289924 to 105296101 6177 - protein coding gene exocyst complex component 3-like
Tssr79123 8 105289983 to 105290009 26 + TSS region transcription start site region 79123
Gm20163 8 105290471 to 105291443 972 + antisense lncRNA gene predicted gene, 20163
Cpgi20923 8 105293196 to 105293780 584 CpG island CpG island 20923
Tssr82639 8 105295934 to 105295948 14 - TSS region transcription start site region 82639
Tssr82640 8 105296044 to 105296110 66 - TSS region transcription start site region 82640
A930018C05Rik 8 105297221 to 105297617 396 unclassified gene RIKEN cDNA A930018C05 gene
Cpgi20924 8 105297439 to 105298418 979 CpG island CpG island 20924
E2f4 8 105297663 to 105305370 7707 + protein coding gene E2F transcription factor 4
Tssr79124 8 105297663 to 105297742 79 + TSS region transcription start site region 79124
Tssr79125 8 105300235 to 105300277 42 + TSS region transcription start site region 79125
Tssr79126 8 105300395 to 105300446 51 + TSS region transcription start site region 79126
Tssr79127 8 105302548 to 105302552 4 + TSS region transcription start site region 79127
Tssr79128 8 105304095 to 105304104 9 + TSS region transcription start site region 79128