Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:104076718-104879887

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29682 8 104088916 to 104105873 16957 - antisense lncRNA gene predicted gene, 29682
Cpgi20893 8 104099649 to 104100315 666 CpG island CpG island 20893
Tssr2672 8 104101598 to 104101613 15 + TSS region transcription start site region 2672
Cdh5 8 104101625 to 104144511 42886 + protein coding gene cadherin 5
Tssr79022 8 104101628 to 104101650 22 + TSS region transcription start site region 79022
Tssr79023 8 104101654 to 104101708 54 + TSS region transcription start site region 79023
Tssr79024 8 104111388 to 104111401 13 + TSS region transcription start site region 79024
Tssr79025 8 104111412 to 104111432 20 + TSS region transcription start site region 79025
Tssr79026 8 104111439 to 104111457 18 + TSS region transcription start site region 79026
Tssr79027 8 104112968 to 104112980 12 + TSS region transcription start site region 79027
D8Mit212 8 104120445 to 104120591 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 212
Tssr79028 8 104131110 to 104131126 16 + TSS region transcription start site region 79028
Tssr79029 8 104133820 to 104133826 6 + TSS region transcription start site region 79029
Cpgi20894 8 104142451 to 104142995 544 CpG island CpG island 20894
Tssr79030 8 104142747 to 104142760 13 + TSS region transcription start site region 79030
Tssr79031 8 104142842 to 104142862 20 + TSS region transcription start site region 79031
Tssr79032 8 104142977 to 104142989 12 + TSS region transcription start site region 79032
Tssr79033 8 104143235 to 104143249 14 + TSS region transcription start site region 79033
Tssr79034 8 104144248 to 104144269 21 + TSS region transcription start site region 79034
Gm45663 8 104152706 to 104154337 1631 + unclassified gene predicted gene 45663
D8Mit352 8 104155198 to 104155317 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 352
Cpgi20895 8 104170020 to 104171772 1752 CpG island CpG island 20895
Bean1 8 104170442 to 104219122 48680 + protein coding gene brain expressed, associated with Nedd4, 1
Tssr79035 8 104170538 to 104170612 74 + TSS region transcription start site region 79035
Gm10631 8 104177795 to 104184599 6804 - antisense lncRNA gene predicted gene 10631
Gm45892 8 104217202 to 104218299 1097 - antisense lncRNA gene predicted gene 45892
Gm45887 8 104220612 to 104223609 2997 + unclassified gene predicted gene 45887
Gm45750 8 104223747 to 104224100 353 + pseudogene predicted gene 45750
Tk2 8 104226685 to 104248558 21873 - protein coding gene thymidine kinase 2, mitochondrial
Tssr82594 8 104239623 to 104239628 5 - TSS region transcription start site region 82594
Tssr79036 8 104239744 to 104239779 35 + TSS region transcription start site region 79036
Tssr82595 8 104247570 to 104247574 4 - TSS region transcription start site region 82595
Cpgi20896 8 104248254 to 104248619 365 CpG island CpG island 20896
Tssr82596 8 104248499 to 104248569 70 - TSS region transcription start site region 82596
Cpgi20897 8 104250771 to 104251216 445 CpG island CpG island 20897
Cklf 8 104250861 to 104264936 14075 + protein coding gene chemokine-like factor
Tssr79037 8 104250869 to 104250912 43 + TSS region transcription start site region 79037
Tssr79038 8 104250925 to 104250940 15 + TSS region transcription start site region 79038
Tssr79039 8 104250943 to 104250954 11 + TSS region transcription start site region 79039
Tssr79040 8 104250960 to 104250971 11 + TSS region transcription start site region 79040
Tssr2673 8 104250989 to 104250998 9 + TSS region transcription start site region 2673
Tssr79041 8 104264468 to 104264476 8 + TSS region transcription start site region 79041
Tssr79042 8 104264482 to 104264508 26 + TSS region transcription start site region 79042
Cmtm2a 8 104281042 to 104293181 12139 - protein coding gene CKLF-like MARVEL transmembrane domain containing 2A
Gm45711 8 104281347 to 104310081 28734 - protein coding gene predicted gene 45711
Tssr82597 8 104293193 to 104293204 11 - TSS region transcription start site region 82597
Cmtm1 8 104293542 to 104310145 16603 - protein coding gene CKLF-like MARVEL transmembrane domain containing 1
Tssr79043 8 104295730 to 104295733 3 + TSS region transcription start site region 79043
Cpgi20898 8 104309353 to 104309704 351 CpG island CpG island 20898
Tssr82598 8 104310052 to 104310102 50 - TSS region transcription start site region 82598
Tssr82599 8 104310109 to 104310110 1 - TSS region transcription start site region 82599
Gm45710 8 104310832 to 104312769 1937 - pseudogene predicted gene 45710
Gm11020 8 104321567 to 104321787 220 + unclassified gene predicted gene 11020
Tssr79044 8 104322204 to 104322237 33 + TSS region transcription start site region 79044
Cmtm2b 8 104322230 to 104330764 8534 + protein coding gene CKLF-like MARVEL transmembrane domain containing 2B
Tssr2674 8 104322257 to 104322268 11 + TSS region transcription start site region 2674
Tssr79045 8 104322324 to 104322367 43 + TSS region transcription start site region 79045
Tssr79046 8 104322378 to 104322389 11 + TSS region transcription start site region 79046
Gm45878 8 104324440 to 104324680 240 - pseudogene predicted gene 45878
Tssr79047 8 104339347 to 104339396 49 + TSS region transcription start site region 79047
Cmtm3 8 104339410 to 104347672 8262 + protein coding gene CKLF-like MARVEL transmembrane domain containing 3
Cpgi20899 8 104340258 to 104341401 1143 CpG island CpG island 20899
Tssr79048 8 104340292 to 104340341 49 + TSS region transcription start site region 79048
Tssr79049 8 104340348 to 104340379 31 + TSS region transcription start site region 79049
Tssr79050 8 104340385 to 104340403 18 + TSS region transcription start site region 79050
Tssr82600 8 104340389 to 104340438 49 - TSS region transcription start site region 82600
Tssr79051 8 104340617 to 104340622 5 + TSS region transcription start site region 79051
Tssr79052 8 104340647 to 104340658 11 + TSS region transcription start site region 79052
Tssr79053 8 104340664 to 104340704 40 + TSS region transcription start site region 79053
Tssr79054 8 104340709 to 104340723 14 + TSS region transcription start site region 79054
Tssr79055 8 104340729 to 104340751 22 + TSS region transcription start site region 79055
Tssr79056 8 104340760 to 104340771 11 + TSS region transcription start site region 79056
Tssr79057 8 104340773 to 104340789 16 + TSS region transcription start site region 79057
Tssr79058 8 104345273 to 104345293 20 + TSS region transcription start site region 79058
Tssr79059 8 104346953 to 104346995 42 + TSS region transcription start site region 79059
Tssr79060 8 104347459 to 104347472 13 + TSS region transcription start site region 79060
Cmtm4 8 104348191 to 104395807 47616 - protein coding gene CKLF-like MARVEL transmembrane domain containing 4
Gm45877 8 104362602 to 104363668 1066 - sense intronic lncRNA gene predicted gene 45877
Cpgi20900 8 104394959 to 104396318 1359 CpG island CpG island 20900
Tssr82601 8 104395765 to 104395858 93 - TSS region transcription start site region 82601
Tssr82602 8 104395873 to 104395886 13 - TSS region transcription start site region 82602
Dync1li2 8 104417680 to 104443047 25367 - protein coding gene dynein, cytoplasmic 1 light intermediate chain 2
Tssr79061 8 104430724 to 104430727 3 + TSS region transcription start site region 79061
Cpgi20901 8 104436014 to 104436244 230 CpG island CpG island 20901
Tssr82603 8 104437639 to 104437657 18 - TSS region transcription start site region 82603
Gm45731 8 104438260 to 104439462 1202 + unclassified gene predicted gene 45731
Tssr82604 8 104441608 to 104441609 1 - TSS region transcription start site region 82604
Cpgi20902 8 104442044 to 104443145 1101 CpG island CpG island 20902
K230015D01Rik 8 104442271 to 104443786 1515 + antisense lncRNA gene RIKEN cDNA K230015D01 gene
Tssr82605 8 104442804 to 104442836 32 - TSS region transcription start site region 82605
Tssr82606 8 104442902 to 104442920 18 - TSS region transcription start site region 82606
Tssr2675 8 104442928 to 104442935 7 - TSS region transcription start site region 2675
Tssr82607 8 104442944 to 104442955 11 - TSS region transcription start site region 82607
Tssr82608 8 104442971 to 104442976 5 - TSS region transcription start site region 82608
Tssr82609 8 104443001 to 104443025 24 - TSS region transcription start site region 82609
Tssr82610 8 104443033 to 104443044 11 - TSS region transcription start site region 82610
Terb1 8 104446718 to 104509887 63169 - protein coding gene telomere repeat binding bouquet formation protein 1
Gm22148 8 104507902 to 104508008 106 + snRNA gene predicted gene, 22148
Cpgi20903 8 104509072 to 104510072 1000 CpG island CpG island 20903
Tssr82611 8 104509874 to 104509894 20 - TSS region transcription start site region 82611
Nae1 8 104511028 to 104534637 23609 - protein coding gene NEDD8 activating enzyme E1 subunit 1
Cpgi20904 8 104534054 to 104534798 744 CpG island CpG island 20904
Tssr82612 8 104534568 to 104534624 56 - TSS region transcription start site region 82612
Tssr82613 8 104534630 to 104534646 16 - TSS region transcription start site region 82613
Car7 8 104534694 to 104550347 15653 + protein coding gene carbonic anhydrase 7
Tssr79062 8 104535053 to 104535081 28 + TSS region transcription start site region 79062
Cpgi20905 8 104540550 to 104541763 1213 CpG island CpG island 20905
Tssr79063 8 104540770 to 104540784 14 + TSS region transcription start site region 79063
Tssr79064 8 104540800 to 104540816 16 + TSS region transcription start site region 79064
Tssr79065 8 104540822 to 104540835 13 + TSS region transcription start site region 79065
Cpgi20906 8 104542085 to 104542383 298 CpG island CpG island 20906
Tssr82614 8 104549988 to 104550014 26 - TSS region transcription start site region 82614
Gm45843 8 104551907 to 104556987 5080 - lincRNA gene predicted gene 45843
Gm6825 8 104577591 to 104577796 205 - pseudogene predicted gene 6825
Cpgi20907 8 104591250 to 104591948 698 CpG island CpG island 20907
Tssr79066 8 104591440 to 104591454 14 + TSS region transcription start site region 79066
Tssr79067 8 104591464 to 104591505 41 + TSS region transcription start site region 79067
Pdp2 8 104591468 to 104599026 7558 + protein coding gene pyruvate dehyrogenase phosphatase catalytic subunit 2
Tssr79068 8 104591510 to 104591520 10 + TSS region transcription start site region 79068
Tssr79069 8 104595356 to 104595361 5 + TSS region transcription start site region 79069
Cdh16 8 104601915 to 104624396 22481 - protein coding gene cadherin 16
Tssr82615 8 104609341 to 104609362 21 - TSS region transcription start site region 82615
Tssr82616 8 104609364 to 104609375 11 - TSS region transcription start site region 82616
Tssr82617 8 104623901 to 104623913 12 - TSS region transcription start site region 82617
Tssr82618 8 104624188 to 104624203 15 - TSS region transcription start site region 82618
Tssr82619 8 104624210 to 104624239 29 - TSS region transcription start site region 82619
Tssr82620 8 104624249 to 104624262 13 - TSS region transcription start site region 82620
Tssr82621 8 104624266 to 104624306 40 - TSS region transcription start site region 82621
Tssr79070 8 104624511 to 104624518 7 + TSS region transcription start site region 79070
Tssr79071 8 104624522 to 104624533 11 + TSS region transcription start site region 79071
Tssr79072 8 104624566 to 104624576 10 + TSS region transcription start site region 79072
Rrad 8 104628070 to 104631327 3257 - protein coding gene Ras-related associated with diabetes
Cpgi20908 8 104630428 to 104631455 1027 CpG island CpG island 20908
Tssr82622 8 104631281 to 104631295 14 - TSS region transcription start site region 82622
Tssr82623 8 104631312 to 104631319 7 - TSS region transcription start site region 82623
Gm33023 8 104631400 to 104635841 4441 + antisense lncRNA gene predicted gene, 33023
Ciao2b 8 104639839 to 104641728 1889 - protein coding gene cytosolic iron-sulfur assembly component 2B
Cpgi20909 8 104640792 to 104642297 1505 CpG island CpG island 20909
Tssr82624 8 104641666 to 104641736 70 - TSS region transcription start site region 82624
1700082M22Rik 8 104641807 to 104658558 16751 + antisense lncRNA gene RIKEN cDNA 1700082M22 gene
Tlm 8 104661827 to 104665081 3254 unclassified gene T lymphoma oncogene
Gm7208 8 104675318 to 104681600 6282 - pseudogene predicted gene 7208
Gm5159 8 104701705 to 104707621 5916 - pseudogene predicted gene 5159
Tssr82625 8 104708269 to 104708272 3 - TSS region transcription start site region 82625
Gm44328 8 104709372 to 104709446 74 - miRNA gene predicted gene, 44328
9230110F11Rik 8 104711249 to 104718260 7011 + unclassified gene RIKEN cDNA 9230110F11 gene
Tssr79073 8 104733997 to 104734024 27 + TSS region transcription start site region 79073
Ces2a 8 104734003 to 104741634 7631 + protein coding gene carboxylesterase 2A
Tssr79074 8 104755710 to 104755713 3 + TSS region transcription start site region 79074
Gm6831 8 104755779 to 104764069 8290 + pseudogene predicted gene 6831
Gm18475 8 104757654 to 104758506 852 - pseudogene predicted gene, 18475
Gm45782 8 104785828 to 104787612 1784 + pseudogene predicted gene 45782
4932416K20Rik 8 104794802 to 104798787 3985 + lincRNA gene RIKEN cDNA 4932416K20 gene
Tssr2676 8 104795236 to 104795238 2 + TSS region transcription start site region 2676
Ces2b 8 104831572 to 104840093 8521 + protein coding gene carboxyesterase 2B
Tssr79075 8 104831591 to 104831598 7 + TSS region transcription start site region 79075
Tssr79076 8 104831601 to 104831609 8 + TSS region transcription start site region 79076
Tssr79077 8 104831634 to 104831666 32 + TSS region transcription start site region 79077
Tssr79078 8 104842038 to 104842044 6 + TSS region transcription start site region 79078
Gm33715 8 104844370 to 104845927 1557 - pseudogene predicted gene, 33715
Matr3-ps2 8 104845636 to 104846879 1243 - pseudogene matrin 3, pseudogene 2
Tssr79079 8 104847061 to 104847079 18 + TSS region transcription start site region 79079
Ces2c 8 104847068 to 104854483 7415 + protein coding gene carboxylesterase 2C
Gm33218 8 104853178 to 104868998 15820 - lncRNA gene predicted gene, 33218
Ces2d-ps 8 104867488 to 104873861 6373 + pseudogene carboxylesterase 2D, pseudogene
Gm33141 8 104869099 to 104888372 19273 - lncRNA gene predicted gene, 33141