Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:103588477-104428596

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr2670 8 103590941 to 103590943 2 - TSS region transcription start site region 2670
Tssr79020 8 103603772 to 103603786 14 + TSS region transcription start site region 79020
Tssr79021 8 103603789 to 103603810 21 + TSS region transcription start site region 79021
4933400L20Rik 8 103603799 to 103680382 76583 + lincRNA gene RIKEN cDNA 4933400L20 gene
Gm39235 8 103722702 to 103728600 5898 + lncRNA gene predicted gene, 39235
Tssr2671 8 103802114 to 103802137 23 - TSS region transcription start site region 2671
D8Mit110 8 103861031 to 103861178 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 110
D8Mit137 8 103883870 to 103883998 128 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 137
D8Mit111 8 104008477 to 104008596 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 111
Gm32728 8 104011068 to 104036762 25694 - lncRNA gene predicted gene, 32728
Cpgi20892 8 104028695 to 104029013 318 CpG island CpG island 20892
Tssr82593 8 104034320 to 104034321 1 - TSS region transcription start site region 82593
Gm39236 8 104059324 to 104066136 6812 + lncRNA gene predicted gene, 39236
Gm8748 8 104071149 to 104071732 583 + pseudogene predicted gene 8748
Gm29682 8 104088916 to 104105873 16957 - antisense lncRNA gene predicted gene, 29682
Cpgi20893 8 104099649 to 104100315 666 CpG island CpG island 20893
Tssr2672 8 104101598 to 104101613 15 + TSS region transcription start site region 2672
Cdh5 8 104101625 to 104144511 42886 + protein coding gene cadherin 5
Tssr79022 8 104101628 to 104101650 22 + TSS region transcription start site region 79022
Tssr79023 8 104101654 to 104101708 54 + TSS region transcription start site region 79023
Tssr79024 8 104111388 to 104111401 13 + TSS region transcription start site region 79024
Tssr79025 8 104111412 to 104111432 20 + TSS region transcription start site region 79025
Tssr79026 8 104111439 to 104111457 18 + TSS region transcription start site region 79026
Tssr79027 8 104112968 to 104112980 12 + TSS region transcription start site region 79027
D8Mit212 8 104120445 to 104120591 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 212
Tssr79028 8 104131110 to 104131126 16 + TSS region transcription start site region 79028
Tssr79029 8 104133820 to 104133826 6 + TSS region transcription start site region 79029
Cpgi20894 8 104142451 to 104142995 544 CpG island CpG island 20894
Tssr79030 8 104142747 to 104142760 13 + TSS region transcription start site region 79030
Tssr79031 8 104142842 to 104142862 20 + TSS region transcription start site region 79031
Tssr79032 8 104142977 to 104142989 12 + TSS region transcription start site region 79032
Tssr79033 8 104143235 to 104143249 14 + TSS region transcription start site region 79033
Tssr79034 8 104144248 to 104144269 21 + TSS region transcription start site region 79034
Gm45663 8 104152706 to 104154337 1631 + unclassified gene predicted gene 45663
D8Mit352 8 104155198 to 104155317 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 352
Cpgi20895 8 104170020 to 104171772 1752 CpG island CpG island 20895
Bean1 8 104170442 to 104219122 48680 + protein coding gene brain expressed, associated with Nedd4, 1
Tssr79035 8 104170538 to 104170612 74 + TSS region transcription start site region 79035
Gm10631 8 104177795 to 104184599 6804 - antisense lncRNA gene predicted gene 10631
Gm45892 8 104217202 to 104218299 1097 - antisense lncRNA gene predicted gene 45892
Gm45887 8 104220612 to 104223609 2997 + unclassified gene predicted gene 45887
Gm45750 8 104223747 to 104224100 353 + pseudogene predicted gene 45750
Tk2 8 104226685 to 104248558 21873 - protein coding gene thymidine kinase 2, mitochondrial
Tssr82594 8 104239623 to 104239628 5 - TSS region transcription start site region 82594
Tssr79036 8 104239744 to 104239779 35 + TSS region transcription start site region 79036
Tssr82595 8 104247570 to 104247574 4 - TSS region transcription start site region 82595
Cpgi20896 8 104248254 to 104248619 365 CpG island CpG island 20896
Tssr82596 8 104248499 to 104248569 70 - TSS region transcription start site region 82596
Cpgi20897 8 104250771 to 104251216 445 CpG island CpG island 20897
Cklf 8 104250861 to 104264936 14075 + protein coding gene chemokine-like factor
Tssr79037 8 104250869 to 104250912 43 + TSS region transcription start site region 79037
Tssr79038 8 104250925 to 104250940 15 + TSS region transcription start site region 79038
Tssr79039 8 104250943 to 104250954 11 + TSS region transcription start site region 79039
Tssr79040 8 104250960 to 104250971 11 + TSS region transcription start site region 79040
Tssr2673 8 104250989 to 104250998 9 + TSS region transcription start site region 2673
Tssr79041 8 104264468 to 104264476 8 + TSS region transcription start site region 79041
Tssr79042 8 104264482 to 104264508 26 + TSS region transcription start site region 79042
Cmtm2a 8 104281042 to 104293181 12139 - protein coding gene CKLF-like MARVEL transmembrane domain containing 2A
Gm45711 8 104281347 to 104310081 28734 - protein coding gene predicted gene 45711
Tssr82597 8 104293193 to 104293204 11 - TSS region transcription start site region 82597
Cmtm1 8 104293542 to 104310145 16603 - protein coding gene CKLF-like MARVEL transmembrane domain containing 1
Tssr79043 8 104295730 to 104295733 3 + TSS region transcription start site region 79043
Cpgi20898 8 104309353 to 104309704 351 CpG island CpG island 20898
Tssr82598 8 104310052 to 104310102 50 - TSS region transcription start site region 82598
Tssr82599 8 104310109 to 104310110 1 - TSS region transcription start site region 82599
Gm45710 8 104310832 to 104312769 1937 - pseudogene predicted gene 45710
Gm11020 8 104321567 to 104321787 220 + unclassified gene predicted gene 11020
Tssr79044 8 104322204 to 104322237 33 + TSS region transcription start site region 79044
Cmtm2b 8 104322230 to 104330764 8534 + protein coding gene CKLF-like MARVEL transmembrane domain containing 2B
Tssr2674 8 104322257 to 104322268 11 + TSS region transcription start site region 2674
Tssr79045 8 104322324 to 104322367 43 + TSS region transcription start site region 79045
Tssr79046 8 104322378 to 104322389 11 + TSS region transcription start site region 79046
Gm45878 8 104324440 to 104324680 240 - pseudogene predicted gene 45878
Tssr79047 8 104339347 to 104339396 49 + TSS region transcription start site region 79047
Cmtm3 8 104339410 to 104347672 8262 + protein coding gene CKLF-like MARVEL transmembrane domain containing 3
Cpgi20899 8 104340258 to 104341401 1143 CpG island CpG island 20899
Tssr79048 8 104340292 to 104340341 49 + TSS region transcription start site region 79048
Tssr79049 8 104340348 to 104340379 31 + TSS region transcription start site region 79049
Tssr79050 8 104340385 to 104340403 18 + TSS region transcription start site region 79050
Tssr82600 8 104340389 to 104340438 49 - TSS region transcription start site region 82600
Tssr79051 8 104340617 to 104340622 5 + TSS region transcription start site region 79051
Tssr79052 8 104340647 to 104340658 11 + TSS region transcription start site region 79052
Tssr79053 8 104340664 to 104340704 40 + TSS region transcription start site region 79053
Tssr79054 8 104340709 to 104340723 14 + TSS region transcription start site region 79054
Tssr79055 8 104340729 to 104340751 22 + TSS region transcription start site region 79055
Tssr79056 8 104340760 to 104340771 11 + TSS region transcription start site region 79056
Tssr79057 8 104340773 to 104340789 16 + TSS region transcription start site region 79057
Tssr79058 8 104345273 to 104345293 20 + TSS region transcription start site region 79058
Tssr79059 8 104346953 to 104346995 42 + TSS region transcription start site region 79059
Tssr79060 8 104347459 to 104347472 13 + TSS region transcription start site region 79060
Cmtm4 8 104348191 to 104395807 47616 - protein coding gene CKLF-like MARVEL transmembrane domain containing 4
Gm45877 8 104362602 to 104363668 1066 - sense intronic lncRNA gene predicted gene 45877
Cpgi20900 8 104394959 to 104396318 1359 CpG island CpG island 20900
Tssr82601 8 104395765 to 104395858 93 - TSS region transcription start site region 82601
Tssr82602 8 104395873 to 104395886 13 - TSS region transcription start site region 82602
Dync1li2 8 104417680 to 104443047 25367 - protein coding gene dynein, cytoplasmic 1 light intermediate chain 2