Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:10151290-11881301

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20075 8 10153657 to 10154434 777 CpG island CpG island 20075
Myo16 8 10153911 to 10634742 480831 + protein coding gene myosin XVI
Tssr76172 8 10153940 to 10153984 44 + TSS region transcription start site region 76172
Tssr76173 8 10154096 to 10154158 62 + TSS region transcription start site region 76173
Tssr76174 8 10183313 to 10183334 21 + TSS region transcription start site region 76174
Tssr76175 8 10249189 to 10249200 11 + TSS region transcription start site region 76175
Cpgi20076 8 10249309 to 10249519 210 CpG island CpG island 20076
Tssr76176 8 10249334 to 10249366 32 + TSS region transcription start site region 76176
D8Mit285 8 10254729 to 10254814 85 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 285
Tssr76177 8 10435789 to 10435799 10 + TSS region transcription start site region 76177
Tssr76178 8 10481124 to 10481136 12 + TSS region transcription start site region 76178
Tssr76179 8 10481146 to 10481164 18 + TSS region transcription start site region 76179
Tssr80338 8 10483937 to 10483948 11 - TSS region transcription start site region 80338
Tssr80339 8 10483958 to 10483970 12 - TSS region transcription start site region 80339
Tssr80340 8 10484007 to 10484016 9 - TSS region transcription start site region 80340
Tssr76180 8 10484084 to 10484101 17 + TSS region transcription start site region 76180
Tssr80341 8 10534902 to 10534916 14 - TSS region transcription start site region 80341
D8Mit332 8 10616044 to 10616165 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 332
Tssr76181 8 10634749 to 10634762 13 + TSS region transcription start site region 76181
D8Mit255 8 10640866 to 10640971 105 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 255
Gm32330 8 10673361 to 10676646 3285 + lncRNA gene predicted gene, 32330
5330413D20Rik 8 10675348 to 10676913 1565 - lincRNA gene RIKEN cDNA 5330413D20 gene
Gm44786 8 10685351 to 10687390 2039 + lincRNA gene predicted gene 44786
Gm44785 8 10687948 to 10691706 3758 + lincRNA gene predicted gene 44785
Tssr80342 8 10695076 to 10695087 11 - TSS region transcription start site region 80342
Tssr2486 8 10705635 to 10705636 1 - TSS region transcription start site region 2486
Gm30666 8 10716707 to 10738674 21967 - pseudogene predicted gene, 30666
Gm44784 8 10723486 to 10725161 1675 + lincRNA gene predicted gene 44784
Gm45045 8 10732676 to 10736533 3857 + lincRNA gene predicted gene 45045
Gm39129 8 10738890 to 10770849 31959 + lincRNA gene predicted gene, 39129
Gm32429 8 10740250 to 10747285 7035 - lncRNA gene predicted gene, 32429
Tssr80343 8 10741001 to 10741027 26 - TSS region transcription start site region 80343
D8Mit1 8 10794081 to 10794305 224 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1
Rps16-ps3 8 10808688 to 10809128 440 - pseudogene ribosomal protein S16, pseudogene 3
Gm32485 8 10817012 to 10817721 709 - lncRNA gene predicted gene, 32485
Gm39130 8 10847429 to 10855147 7718 + lncRNA gene predicted gene, 39130
Tssr76182 8 10853411 to 10853420 9 + TSS region transcription start site region 76182
Gm32540 8 10858750 to 10866186 7436 - lincRNA gene predicted gene, 32540
Tssr80344 8 10865103 to 10865119 16 - TSS region transcription start site region 80344
Tssr80345 8 10865315 to 10865329 14 - TSS region transcription start site region 80345
Tssr80346 8 10865930 to 10865936 6 - TSS region transcription start site region 80346
Tssr80347 8 10865998 to 10866082 84 - TSS region transcription start site region 80347
D8Mit59 8 10867012 to 10867149 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59
D8Mit59.1 8 10867119 to 10867232 113 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 59.1
B930025P03Rik 8 10870422 to 10882454 12032 - lincRNA gene RIKEN cDNA B930025P03 gene
Gm45044 8 10884453 to 10891591 7138 - lincRNA gene predicted gene 45044
Tssr80348 8 10892047 to 10892071 24 - TSS region transcription start site region 80348
Tssr80349 8 10892078 to 10892089 11 - TSS region transcription start site region 80349
Gm2814 8 10898169 to 10900558 2389 - lincRNA gene predicted gene 2814
Tssr76183 8 10899915 to 10899928 13 + TSS region transcription start site region 76183
4833411C07Rik 8 10899922 to 10902334 2412 + lncRNA gene RIKEN cDNA 4833411C07 gene
Tssr76184 8 10899947 to 10899956 9 + TSS region transcription start site region 76184
Tssr80350 8 10900540 to 10900563 23 - TSS region transcription start site region 80350
Tssr76185 8 10902046 to 10902061 15 + TSS region transcription start site region 76185
Gm32594 8 10919619 to 10921084 1465 - lncRNA gene predicted gene, 32594
D8Ertd130e 8 10920252 to 10920451 199 DNA segment DNA segment, Chr 8, ERATO Doi 130, expressed
3930402G23Rik 8 10924427 to 10928457 4030 - lincRNA gene RIKEN cDNA 3930402G23 gene
Tssr80351 8 10928449 to 10928464 15 - TSS region transcription start site region 80351
Gm45042 8 10929887 to 10930097 210 + pseudogene predicted gene 45042
D8Mit286 8 10939167 to 10939280 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 286
Gm44955 8 10943326 to 10947890 4564 - lincRNA gene predicted gene 44955
Cpgi20077 8 10946190 to 10946379 189 CpG island CpG island 20077
Tssr80352 8 10947806 to 10947820 14 - TSS region transcription start site region 80352
Tssr80353 8 10947821 to 10947845 24 - TSS region transcription start site region 80353
Tssr80354 8 10947853 to 10947862 9 - TSS region transcription start site region 80354
Gm44956 8 10962957 to 10970814 7857 - lincRNA gene predicted gene 44956
Cpgi20078 8 10978500 to 10978819 319 CpG island CpG island 20078
Irs2 8 10986961 to 11008430 21469 - protein coding gene insulin receptor substrate 2
Cpgi20079 8 11004495 to 11004761 266 CpG island CpG island 20079
Tssr80355 8 11006242 to 11006246 4 - TSS region transcription start site region 80355
Cpgi20080 8 11006577 to 11010093 3516 CpG island CpG island 20080
Tssr80356 8 11006711 to 11006725 14 - TSS region transcription start site region 80356
Tssr76186 8 11007429 to 11007466 37 + TSS region transcription start site region 76186
9530052E02Rik 8 11007850 to 11054541 46691 + lncRNA gene RIKEN cDNA 9530052E02 gene
Tssr80357 8 11007951 to 11007979 28 - TSS region transcription start site region 80357
Tssr80358 8 11008230 to 11008243 13 - TSS region transcription start site region 80358
Tssr80359 8 11008894 to 11008905 11 - TSS region transcription start site region 80359
Tssr80360 8 11008913 to 11008936 23 - TSS region transcription start site region 80360
Tssr80361 8 11008941 to 11008973 32 - TSS region transcription start site region 80361
Tssr76187 8 11009177 to 11009197 20 + TSS region transcription start site region 76187
Tssr80362 8 11009461 to 11009499 38 - TSS region transcription start site region 80362
Tssr80363 8 11016290 to 11016301 11 - TSS region transcription start site region 80363
Tssr76188 8 11036227 to 11036239 12 + TSS region transcription start site region 76188
B830042I05Rik 8 11071046 to 11076881 5835 + lincRNA gene RIKEN cDNA B830042I05 gene
Tssr76189 8 11071465 to 11071479 14 + TSS region transcription start site region 76189
Tssr76190 8 11098965 to 11098983 18 + TSS region transcription start site region 76190
Gm44714 8 11116555 to 11117373 818 + lincRNA gene predicted gene 44714
Gm44717 8 11135641 to 11149246 13605 - lincRNA gene predicted gene 44717
Tssr76191 8 11175221 to 11175225 4 + TSS region transcription start site region 76191
Tssr80364 8 11183699 to 11183703 4 - TSS region transcription start site region 80364
Cpgi20081 8 11187661 to 11188458 797 CpG island CpG island 20081
Gm15418 8 11187755 to 11204503 16748 + antisense lncRNA gene predicted gene 15418
Col4a1 8 11198423 to 11312826 114403 - protein coding gene collagen, type IV, alpha 1
D0Nds29 8 11199100 to 11199218 118 DNA segment DNA segment, Nuffield Department of Surgery 29
Tssr80365 8 11199340 to 11199353 13 - TSS region transcription start site region 80365
Tssr80366 8 11199735 to 11199776 41 - TSS region transcription start site region 80366
Tssr80367 8 11201784 to 11201806 22 - TSS region transcription start site region 80367
Tssr80368 8 11202991 to 11203009 18 - TSS region transcription start site region 80368
Tssr80369 8 11211573 to 11211577 4 - TSS region transcription start site region 80369
Tssr76192 8 11217945 to 11217970 25 + TSS region transcription start site region 76192
Tssr80370 8 11218764 to 11218769 5 - TSS region transcription start site region 80370
Tssr80371 8 11219189 to 11219201 12 - TSS region transcription start site region 80371
Tssr80372 8 11221377 to 11221392 15 - TSS region transcription start site region 80372
Tssr80373 8 11231427 to 11231472 45 - TSS region transcription start site region 80373
Tssr80374 8 11239175 to 11239178 3 - TSS region transcription start site region 80374
Gm32709 8 11258088 to 11285958 27870 + lncRNA gene predicted gene, 32709
Tssr80375 8 11267617 to 11267659 42 - TSS region transcription start site region 80375
Tssr80376 8 11279657 to 11279692 35 - TSS region transcription start site region 80376
Tssr80377 8 11282081 to 11282090 9 - TSS region transcription start site region 80377
Gm44716 8 11290558 to 11291267 709 - unclassified gene predicted gene 44716
Cpgi20082 8 11311904 to 11313977 2073 CpG island CpG island 20082
Tssr76193 8 11312508 to 11312531 23 + TSS region transcription start site region 76193
Tssr76194 8 11312532 to 11312557 25 + TSS region transcription start site region 76194
Tssr80378 8 11312731 to 11312758 27 - TSS region transcription start site region 80378
Col4a2 8 11312805 to 11449287 136482 + protein coding gene collagen, type IV, alpha 2
Tssr76195 8 11312860 to 11312867 7 + TSS region transcription start site region 76195
Tssr76196 8 11312869 to 11312887 18 + TSS region transcription start site region 76196
Tssr80379 8 11314023 to 11314027 4 - TSS region transcription start site region 80379
Gm46030 8 11321303 to 11351695 30392 - lncRNA gene predicted gene, 46030
Tssr76197 8 11325485 to 11325492 7 + TSS region transcription start site region 76197
Tssr76198 8 11325581 to 11325600 19 + TSS region transcription start site region 76198
Tssr76199 8 11336213 to 11336224 11 + TSS region transcription start site region 76199
Tssr76200 8 11352046 to 11352061 15 + TSS region transcription start site region 76200
Tssr80380 8 11354301 to 11354323 22 - TSS region transcription start site region 80380
Tssr76201 8 11354318 to 11354330 12 + TSS region transcription start site region 76201
Tssr76202 8 11398668 to 11398681 13 + TSS region transcription start site region 76202
Tssr76203 8 11398757 to 11398768 11 + TSS region transcription start site region 76203
Gm15419 8 11399186 to 11417892 18706 - antisense lncRNA gene predicted gene 15419
Tssr76204 8 11406821 to 11406825 4 + TSS region transcription start site region 76204
Tssr2487 8 11408104 to 11408115 11 + TSS region transcription start site region 2487
Tssr2488 8 11423562 to 11423564 2 + TSS region transcription start site region 2488
D8Mit218.2 8 11428855 to 11429006 151 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218.2
D8Mit218 8 11428984 to 11429076 92 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 218
Tssr76205 8 11431090 to 11431101 11 + TSS region transcription start site region 76205
Tssr76206 8 11448154 to 11448168 14 + TSS region transcription start site region 76206
Tssr76207 8 11448495 to 11448557 62 + TSS region transcription start site region 76207
Tssr76208 8 11448969 to 11449001 32 + TSS region transcription start site region 76208
Tssr76209 8 11449034 to 11449045 11 + TSS region transcription start site region 76209
Rab20 8 11453513 to 11478499 24986 - protein coding gene RAB20, member RAS oncogene family
Tssr80381 8 11454924 to 11454934 10 - TSS region transcription start site region 80381
D8Mit217 8 11455083 to 11455257 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 217
Gm20100 8 11457471 to 11459742 2271 - unclassified gene predicted gene, 20100
Tssr76210 8 11458498 to 11458521 23 + TSS region transcription start site region 76210
Tssr76211 8 11458522 to 11458544 22 + TSS region transcription start site region 76211
Tssr76212 8 11461212 to 11461223 11 + TSS region transcription start site region 76212
Tssr76213 8 11461228 to 11461244 16 + TSS region transcription start site region 76213
Tssr76214 8 11463969 to 11463982 13 + TSS region transcription start site region 76214
Tssr76215 8 11464602 to 11464631 29 + TSS region transcription start site region 76215
Tssr80382 8 11470351 to 11470354 3 - TSS region transcription start site region 80382
Tssr80383 8 11476817 to 11476824 7 - TSS region transcription start site region 80383
Tssr76216 8 11476989 to 11477002 13 + TSS region transcription start site region 76216
Tssr76217 8 11477004 to 11477016 12 + TSS region transcription start site region 76217
Tssr76218 8 11477018 to 11477030 12 + TSS region transcription start site region 76218
Cpgi20083 8 11477855 to 11478727 872 CpG island CpG island 20083
Tssr76219 8 11477921 to 11477953 32 + TSS region transcription start site region 76219
E230013L22Rik 8 11477929 to 11480241 2312 + bidirectional promoter lncRNA gene RIKEN cDNA E230013L22 gene
Tssr80384 8 11478618 to 11478668 50 - TSS region transcription start site region 80384
Cpgi20084 8 11497158 to 11498077 919 CpG island CpG island 20084
Naxd 8 11497506 to 11513287 15781 + protein coding gene NAD(P)HX dehydratase
Tssr76220 8 11497547 to 11497616 69 + TSS region transcription start site region 76220
Tssr76221 8 11497619 to 11497648 29 + TSS region transcription start site region 76221
Cars2 8 11514017 to 11550778 36761 - protein coding gene cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
Tssr76222 8 11519235 to 11519238 3 + TSS region transcription start site region 76222
Cpgi20085 8 11550279 to 11551057 778 CpG island CpG island 20085
Tssr80385 8 11550689 to 11550755 66 - TSS region transcription start site region 80385
Cpgi20086 8 11554861 to 11558727 3866 CpG island CpG island 20086
Tssr80386 8 11555258 to 11555267 9 - TSS region transcription start site region 80386
Ing1 8 11555762 to 11563251 7489 + protein coding gene inhibitor of growth family, member 1
Tssr76223 8 11555784 to 11555794 10 + TSS region transcription start site region 76223
Tssr76224 8 11555845 to 11555879 34 + TSS region transcription start site region 76224
Tssr76225 8 11556061 to 11556099 38 + TSS region transcription start site region 76225
Tssr76226 8 11556436 to 11556466 30 + TSS region transcription start site region 76226
Tssr76227 8 11556469 to 11556491 22 + TSS region transcription start site region 76227
Tssr76228 8 11556867 to 11556918 51 + TSS region transcription start site region 76228
Tssr80387 8 11557991 to 11557997 6 - TSS region transcription start site region 80387
Tssr76229 8 11558412 to 11558433 21 + TSS region transcription start site region 76229
Tssr76230 8 11558450 to 11558468 18 + TSS region transcription start site region 76230
Ankrd10 8 11611583 to 11635757 24174 - protein coding gene ankyrin repeat domain 10
2610319H10Rik 8 11622372 to 11623240 868 unclassified gene RIKEN cDNA 2610319H10 gene
Tssr80388 8 11626803 to 11626812 9 - TSS region transcription start site region 80388
Cpgi20087 8 11634485 to 11636667 2182 CpG island CpG island 20087
Tssr80389 8 11635026 to 11635048 22 - TSS region transcription start site region 80389
Tssr80390 8 11635052 to 11635079 27 - TSS region transcription start site region 80390
Tssr80391 8 11635641 to 11635645 4 - TSS region transcription start site region 80391
Tssr80392 8 11635693 to 11635723 30 - TSS region transcription start site region 80392
Mir7238 8 11635694 to 11635736 42 - miRNA gene microRNA 7238
Tssr80393 8 11635729 to 11635743 14 - TSS region transcription start site region 80393
Tssr80394 8 11635745 to 11635765 20 - TSS region transcription start site region 80394
Gm45592 8 11637282 to 11638324 1042 + unclassified gene predicted gene 45592
Tssr76231 8 11644661 to 11644664 3 + TSS region transcription start site region 76231
1700016D06Rik 8 11654921 to 11678750 23829 - protein coding gene RIKEN cDNA 1700016D06 gene
Gm7562 8 11674574 to 11677110 2536 + unclassified gene predicted gene 7562
Tssr80395 8 11678696 to 11678706 10 - TSS region transcription start site region 80395
Tssr80396 8 11678710 to 11678726 16 - TSS region transcription start site region 80396
Tssr80397 8 11678728 to 11678754 26 - TSS region transcription start site region 80397
4930465I24Rik 8 11678808 to 11682211 3403 + antisense lncRNA gene RIKEN cDNA 4930465I24 gene
Gm7600 8 11683459 to 11684243 784 - pseudogene predicted gene 7600
Gm6524 8 11693042 to 11694484 1442 - pseudogene predicted gene 6524
Gm27854 8 11696615 to 11696858 243 - unclassified non-coding RNA gene predicted gene, 27854
D8Mit173 8 11700914 to 11701043 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 173