Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:99470038-101240076

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427 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klhl35 7 99466004 to 99474022 8018 + protein coding gene kelch-like 35
Cpgi19467 7 99471667 to 99472005 338 CpG island CpG island 19467
Rps3 7 99477896 to 99483709 5813 - protein coding gene ribosomal protein S3
Tssr73685 7 99478596 to 99478599 3 - TSS region transcription start site region 73685
Tssr68058 7 99478881 to 99478916 35 + TSS region transcription start site region 68058
Snord15b 7 99479563 to 99479707 144 - snoRNA gene small nucleolar RNA, C/D box 14B
Tssr73686 7 99479702 to 99479707 5 - TSS region transcription start site region 73686
Tssr73687 7 99480008 to 99480029 21 - TSS region transcription start site region 73687
Tssr73688 7 99482323 to 99482334 11 - TSS region transcription start site region 73688
Snord15a 7 99482785 to 99482932 147 - snoRNA gene small nucleolar RNA, C/D box 15A
Tssr73689 7 99482926 to 99482934 8 - TSS region transcription start site region 73689
Cpgi19468 7 99483151 to 99483730 579 CpG island CpG island 19468
Tssr73690 7 99483645 to 99483654 9 - TSS region transcription start site region 73690
n-R5s156 7 99497718 to 99497822 104 + rRNA gene nuclear encoded rRNA 5S 156
Gm39056 7 99500464 to 99505945 5481 + lncRNA gene predicted gene, 39056
D7Dcr42 7 99511327 to 99511446 119 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 42
D7Mit353 7 99511336 to 99511445 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 353
Gm40450 7 99511650 to 99517153 5503 + lncRNA gene predicted gene, 40450
Gm34172 7 99516645 to 99529638 12993 - lncRNA gene predicted gene, 34172
Cpgi19469 7 99535026 to 99536478 1452 CpG island CpG island 19469
Tssr68059 7 99535143 to 99535184 41 + TSS region transcription start site region 68059
Tssr68060 7 99535262 to 99535280 18 + TSS region transcription start site region 68060
Tssr68061 7 99535300 to 99535311 11 + TSS region transcription start site region 68061
Tssr68062 7 99535439 to 99535498 59 + TSS region transcription start site region 68062
Arrb1 7 99535486 to 99606772 71286 + protein coding gene arrestin, beta 1
Tssr68063 7 99535512 to 99535591 79 + TSS region transcription start site region 68063
Tssr68064 7 99535652 to 99535740 88 + TSS region transcription start site region 68064
Tssr73691 7 99536040 to 99536053 13 - TSS region transcription start site region 73691
Tssr68065 7 99536456 to 99536458 2 + TSS region transcription start site region 68065
Tssr2337 7 99540427 to 99540434 7 + TSS region transcription start site region 2337
n-TEctc3 7 99543900 to 99543971 71 - tRNA gene nuclear encoded tRNA glutamic acid 3 (anticodon CTC)
Mir326 7 99552269 to 99552363 94 + miRNA gene microRNA 326
Gm44914 7 99568121 to 99570840 2719 - unclassified gene predicted gene 44914
Tssr68066 7 99570544 to 99570588 44 + TSS region transcription start site region 68066
Tssr68067 7 99579575 to 99579604 29 + TSS region transcription start site region 68067
Tssr68068 7 99579627 to 99579644 17 + TSS region transcription start site region 68068
Tssr68069 7 99579694 to 99579709 15 + TSS region transcription start site region 68069
Tssr2338 7 99579755 to 99579764 9 + TSS region transcription start site region 2338
Tssr68070 7 99588073 to 99588124 51 + TSS region transcription start site region 68070
Tssr68071 7 99594580 to 99594604 24 + TSS region transcription start site region 68071
Tssr68072 7 99594605 to 99594630 25 + TSS region transcription start site region 68072
Tssr68073 7 99594638 to 99594645 7 + TSS region transcription start site region 68073
Tssr2339 7 99601677 to 99601715 38 + TSS region transcription start site region 2339
Tssr68074 7 99603895 to 99603903 8 + TSS region transcription start site region 68074
D7Bwg1382 7 99606605 to 99606754 149 DNA segment DNA segment, Chr 7, Brigham & Women's Genetics 1382
Tpbgl 7 99624082 to 99627103 3021 - protein coding gene trophoblast glycoprotein-like
Cpgi19470 7 99625396 to 99627423 2027 CpG island CpG island 19470
Tssr2340 7 99625514 to 99625515 1 + TSS region transcription start site region 2340
Gm10605 7 99625936 to 99631711 5775 + lincRNA gene predicted gene 10605
Tssr68075 7 99625952 to 99626018 66 + TSS region transcription start site region 68075
Tssr73692 7 99626794 to 99626833 39 - TSS region transcription start site region 73692
Tssr73693 7 99626857 to 99626868 11 - TSS region transcription start site region 73693
Tssr73694 7 99626904 to 99626933 29 - TSS region transcription start site region 73694
Tssr73695 7 99626936 to 99626953 17 - TSS region transcription start site region 73695
Gm25409 7 99653688 to 99653818 130 - snoRNA gene predicted gene, 25409
Slco2b1 7 99657804 to 99711340 53536 - protein coding gene solute carrier organic anion transporter family, member 2b1
Gm15635 7 99660130 to 99667500 7370 + antisense lncRNA gene predicted gene 15635
D7Mit39 7 99679380 to 99679528 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 39
Tssr73696 7 99691623 to 99691634 11 - TSS region transcription start site region 73696
Gm34280 7 99694297 to 99712777 18480 + antisense lncRNA gene predicted gene, 34280
Tssr73697 7 99695563 to 99695568 5 - TSS region transcription start site region 73697
Tssr73698 7 99695572 to 99695622 50 - TSS region transcription start site region 73698
Tssr73699 7 99695628 to 99695630 2 - TSS region transcription start site region 73699
Tssr73700 7 99695640 to 99695653 13 - TSS region transcription start site region 73700
Tssr73701 7 99695840 to 99695855 15 - TSS region transcription start site region 73701
Tssr73702 7 99695858 to 99695871 13 - TSS region transcription start site region 73702
Tssr73703 7 99701048 to 99701065 17 - TSS region transcription start site region 73703
Tssr73704 7 99706636 to 99706652 16 - TSS region transcription start site region 73704
Tssr73705 7 99706734 to 99706737 3 - TSS region transcription start site region 73705
Tssr73706 7 99706827 to 99706873 46 - TSS region transcription start site region 73706
Gm44551 7 99725208 to 99725378 170 - pseudogene predicted gene 44551
Olfr520 7 99735145 to 99736095 950 + protein coding gene olfactory receptor 520
Gm19182 7 99740224 to 99740791 567 - pseudogene predicted gene, 19182
Olfr521 7 99767164 to 99768130 966 + protein coding gene olfactory receptor 521
D7Mit326 7 99777585 to 99777667 82 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 326
F730035P03Rik 7 99780001 to 99781539 1538 - lincRNA gene RIKEN cDNA F730035P03 gene
Neu3 7 99811439 to 99828417 16978 - protein coding gene neuraminidase 3
Tssr68076 7 99818583 to 99818591 8 + TSS region transcription start site region 68076
Tssr73707 7 99823383 to 99823424 41 - TSS region transcription start site region 73707
Cpgi19471 7 99828069 to 99828535 466 CpG island CpG island 19471
Tssr73708 7 99828287 to 99828308 21 - TSS region transcription start site region 73708
Tssr73709 7 99828324 to 99828339 15 - TSS region transcription start site region 73709
Tssr73710 7 99828344 to 99828384 40 - TSS region transcription start site region 73710
Spcs2 7 99837569 to 99863462 25893 - protein coding gene signal peptidase complex subunit 2 homolog (S. cerevisiae)
Tssr73711 7 99858300 to 99858303 3 - TSS region transcription start site region 73711
Cpgi19472 7 99858508 to 99859329 821 CpG island CpG island 19472
Tssr73712 7 99858872 to 99858906 34 - TSS region transcription start site region 73712
Tssr73713 7 99858910 to 99858921 11 - TSS region transcription start site region 73713
Tssr73714 7 99858992 to 99859007 15 - TSS region transcription start site region 73714
Tssr68077 7 99859059 to 99859120 61 + TSS region transcription start site region 68077
Tssr68078 7 99859123 to 99859140 17 + TSS region transcription start site region 68078
Xrra1 7 99859218 to 99917824 58606 + protein coding gene X-ray radiation resistance associated 1
Tssr73715 7 99862664 to 99862665 1 - TSS region transcription start site region 73715
Tssr73716 7 99863356 to 99863374 18 - TSS region transcription start site region 73716
Tssr68079 7 99863494 to 99863504 10 + TSS region transcription start site region 68079
Tssr73717 7 99865320 to 99865337 17 - TSS region transcription start site region 73717
Tssr73718 7 99865351 to 99865367 16 - TSS region transcription start site region 73718
Gm38405 7 99870666 to 99889358 18692 - antisense lncRNA gene predicted gene, 38405
Tssr2341 7 99879734 to 99879744 10 - TSS region transcription start site region 2341
Tssr73719 7 99889292 to 99889303 11 - TSS region transcription start site region 73719
Tssr73720 7 99889326 to 99889368 42 - TSS region transcription start site region 73720
A930030B08Rik 7 99900192 to 99904156 3964 - unclassified gene RIKEN cDNA A930030B08 gene
Tssr73721 7 99906206 to 99906217 11 - TSS region transcription start site region 73721
Tssr73722 7 99906224 to 99906231 7 - TSS region transcription start site region 73722
Tssr68080 7 99906326 to 99906353 27 + TSS region transcription start site region 68080
Tssr68081 7 99906407 to 99906415 8 + TSS region transcription start site region 68081
Tssr68082 7 99906443 to 99906450 7 + TSS region transcription start site region 68082
Tssr68083 7 99906516 to 99906525 9 + TSS region transcription start site region 68083
Tssr68084 7 99906532 to 99906536 4 + TSS region transcription start site region 68084
Tssr68085 7 99906537 to 99906552 15 + TSS region transcription start site region 68085
Tssr68086 7 99915789 to 99915792 3 + TSS region transcription start site region 68086
Cpgi19473 7 99916719 to 99918015 1296 CpG island CpG island 19473
Tssr73723 7 99917402 to 99917431 29 - TSS region transcription start site region 73723
Rnf169 7 99920254 to 99980448 60194 - protein coding gene ring finger protein 169
Tssr73724 7 99922346 to 99922367 21 - TSS region transcription start site region 73724
Gm5115 7 99929646 to 99932287 2641 - unclassified gene predicted gene 5115
D7Wsu69e 7 99936426 to 99936675 249 DNA segment DNA segment, Chr 7, Wayne State University 69, expressed
Gm18959 7 99945062 to 99945624 562 + pseudogene predicted gene, 18959
Tssr73725 7 99965708 to 99965728 20 - TSS region transcription start site region 73725
Cpgi19474 7 99979553 to 99980559 1006 CpG island CpG island 19474
Tssr68087 7 99979710 to 99979732 22 + TSS region transcription start site region 68087
Tssr68088 7 99979755 to 99979771 16 + TSS region transcription start site region 68088
Tssr73726 7 99980408 to 99980417 9 - TSS region transcription start site region 73726
Tssr73727 7 99980431 to 99980477 46 - TSS region transcription start site region 73727
Gm17931 7 99996775 to 99997405 630 + pseudogene predicted gene, 17931
Cpgi19475 7 100005712 to 100006833 1121 CpG island CpG island 19475
Tssr68089 7 100006018 to 100006023 5 + TSS region transcription start site region 68089
Tssr68090 7 100006034 to 100006064 30 + TSS region transcription start site region 68090
Tssr68091 7 100006066 to 100006085 19 + TSS region transcription start site region 68091
Chrdl2 7 100006404 to 100034728 28324 + protein coding gene chordin-like 2
Cpgi19476 7 100042086 to 100042613 527 CpG island CpG island 19476
Pold3 7 100082111 to 100121560 39449 - protein coding gene polymerase (DNA-directed), delta 3, accessory subunit
Tssr68092 7 100100287 to 100100334 47 + TSS region transcription start site region 68092
Tssr73728 7 100101433 to 100101460 27 - TSS region transcription start site region 73728
Tssr73729 7 100113847 to 100113850 3 - TSS region transcription start site region 73729
Tssr73730 7 100120523 to 100120549 26 - TSS region transcription start site region 73730
Cpgi19477 7 100120852 to 100121842 990 CpG island CpG island 19477
Tssr73731 7 100121046 to 100121094 48 - TSS region transcription start site region 73731
Tssr73732 7 100121432 to 100121442 10 - TSS region transcription start site region 73732
Tssr73733 7 100121446 to 100121511 65 - TSS region transcription start site region 73733
Tssr73734 7 100121512 to 100121524 12 - TSS region transcription start site region 73734
Gm34760 7 100131880 to 100137487 5607 + lncRNA gene predicted gene, 34760
Cpgi19478 7 100159015 to 100160279 1264 CpG island CpG island 19478
Tssr68093 7 100159241 to 100159315 74 + TSS region transcription start site region 68093
Lipt2 7 100159277 to 100160931 1654 + protein coding gene lipoyl(octanoyl) transferase 2 (putative)
Tssr68094 7 100159317 to 100159330 13 + TSS region transcription start site region 68094
Gm39057 7 100163323 to 100171156 7833 - lncRNA gene predicted gene, 39057
Tssr68095 7 100172455 to 100172457 2 + TSS region transcription start site region 68095
Gm34821 7 100173423 to 100176631 3208 - antisense lncRNA gene predicted gene, 34821
Kcne3 7 100176507 to 100184869 8362 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 3
Tssr73735 7 100176598 to 100176615 17 - TSS region transcription start site region 73735
Tssr68096 7 100176663 to 100176680 17 + TSS region transcription start site region 68096
Tssr68097 7 100176683 to 100176690 7 + TSS region transcription start site region 68097
Tssr68098 7 100176702 to 100176711 9 + TSS region transcription start site region 68098
Cpgi19479 7 100178548 to 100179205 657 CpG island CpG island 19479
Tssr68099 7 100178679 to 100178704 25 + TSS region transcription start site region 68099
Tssr68100 7 100178732 to 100178739 7 + TSS region transcription start site region 68100
Gm45994 7 100189261 to 100192666 3405 - lncRNA gene predicted gene, 45994
Gm7067 7 100197111 to 100198348 1237 - pseudogene predicted gene 7067
Gm34877 7 100200776 to 100227209 26433 - lncRNA gene predicted gene, 34877
Cpgi19480 7 100227094 to 100228243 1149 CpG island CpG island 19480
Tssr68101 7 100227311 to 100227384 73 + TSS region transcription start site region 68101
Pgm2l1 7 100227394 to 100278868 51474 + protein coding gene phosphoglucomutase 2-like 1
Tssr68102 7 100227462 to 100227504 42 + TSS region transcription start site region 68102
Tssr68103 7 100227624 to 100227635 11 + TSS region transcription start site region 68103
Tssr68104 7 100227638 to 100227706 68 + TSS region transcription start site region 68104
Tssr68105 7 100227740 to 100227781 41 + TSS region transcription start site region 68105
Tssr68106 7 100227783 to 100227788 5 + TSS region transcription start site region 68106
Tssr68107 7 100235119 to 100235122 3 + TSS region transcription start site region 68107
Tssr68108 7 100264645 to 100264667 22 + TSS region transcription start site region 68108
Gpx2-ps1 7 100264675 to 100265245 570 + pseudogene glutathione peroxidase 2, pseudogene 1
Tssr68109 7 100276648 to 100276650 2 + TSS region transcription start site region 68109
Cpgi19481 7 100285162 to 100285876 714 CpG island CpG island 19481
Tssr68110 7 100285478 to 100285564 86 + TSS region transcription start site region 68110
P4ha3 7 100285520 to 100319699 34179 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
Tssr68111 7 100319030 to 100319048 18 + TSS region transcription start site region 68111
Tssr68112 7 100319094 to 100319105 11 + TSS region transcription start site region 68112
Tssr68113 7 100319249 to 100319272 23 + TSS region transcription start site region 68113
Tssr68114 7 100319404 to 100319433 29 + TSS region transcription start site region 68114
Ppme1 7 100326737 to 100371896 45159 - protein coding gene protein phosphatase methylesterase 1
Tssr73736 7 100355038 to 100355076 38 - TSS region transcription start site region 73736
Cpgi19482 7 100371587 to 100372498 911 CpG island CpG island 19482
Tssr73737 7 100371773 to 100371788 15 - TSS region transcription start site region 73737
Tssr73738 7 100371889 to 100371988 99 - TSS region transcription start site region 73738
Tssr68115 7 100372051 to 100372084 33 + TSS region transcription start site region 68115
Tssr68116 7 100372092 to 100372101 9 + TSS region transcription start site region 68116
Tssr68117 7 100372224 to 100372383 159 + TSS region transcription start site region 68117
C2cd3 7 100372233 to 100470152 97919 + protein coding gene C2 calcium-dependent domain containing 3
Tssr68118 7 100372388 to 100372424 36 + TSS region transcription start site region 68118
Gm44571 7 100381594 to 100382308 714 + pseudogene predicted gene 44571
Gm37716 7 100458460 to 100459406 946 + unclassified gene predicted gene, 37716
Gm10603 7 100463049 to 100467382 4333 - antisense lncRNA gene predicted gene 10603
Tssr73739 7 100467125 to 100467148 23 - TSS region transcription start site region 73739
Tssr73740 7 100467149 to 100467171 22 - TSS region transcription start site region 73740
Tssr73741 7 100467217 to 100467244 27 - TSS region transcription start site region 73741
Tssr73742 7 100467253 to 100467266 13 - TSS region transcription start site region 73742
Tssr68119 7 100472929 to 100472938 9 + TSS region transcription start site region 68119
Tssr68120 7 100472960 to 100472975 15 + TSS region transcription start site region 68120
Tssr68121 7 100472985 to 100472998 13 + TSS region transcription start site region 68121
Ucp3 7 100472991 to 100486432 13441 + protein coding gene uncoupling protein 3 (mitochondrial, proton carrier)