Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:98334380-101024528

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578 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tsku 7 98350668 to 98361328 10660 - protein coding gene tsukushi, small leucine rich proteoglycan
Tssr73623 7 98350938 to 98350944 6 - TSS region transcription start site region 73623
Cpgi19445 7 98359868 to 98361642 1774 CpG island CpG island 19445
Tssr73624 7 98360435 to 98360470 35 - TSS region transcription start site region 73624
Tssr73625 7 98361248 to 98361255 7 - TSS region transcription start site region 73625
Tssr73626 7 98361275 to 98361295 20 - TSS region transcription start site region 73626
Tssr73627 7 98361310 to 98361320 10 - TSS region transcription start site region 73627
Tssr73628 7 98361327 to 98361343 16 - TSS region transcription start site region 73628
Tssr73629 7 98361393 to 98361401 8 - TSS region transcription start site region 73629
Tssr73630 7 98361495 to 98361504 9 - TSS region transcription start site region 73630
Tssr68012 7 98371737 to 98371745 8 + TSS region transcription start site region 68012
Tssr73631 7 98379266 to 98379272 6 - TSS region transcription start site region 73631
Gm44507 7 98388091 to 98415624 27533 - lincRNA gene predicted gene 44507
Tssr73632 7 98415622 to 98415625 3 - TSS region transcription start site region 73632
Gm39053 7 98433482 to 98437946 4464 + lncRNA gene predicted gene, 39053
Gm44980 7 98437206 to 98437519 313 - pseudogene predicted gene 44980
Gucy2d 7 98440416 to 98477479 37063 + protein coding gene guanylate cyclase 2d
Tssr68013 7 98455106 to 98455140 34 + TSS region transcription start site region 68013
Gm2926 7 98455260 to 98455498 238 + pseudogene predicted gene 2926
Gm44978 7 98465130 to 98465446 316 - pseudogene predicted gene 44978
Gm38588 7 98481265 to 98486221 4956 + lncRNA gene predicted gene, 38588
Tssr68014 7 98486894 to 98486901 7 + TSS region transcription start site region 68014
Lrrc32 7 98489301 to 98501831 12530 + protein coding gene leucine rich repeat containing 32
Cpgi19446 7 98489502 to 98490543 1041 CpG island CpG island 19446
Tssr68015 7 98489983 to 98490001 18 + TSS region transcription start site region 68015
Tssr68016 7 98490028 to 98490039 11 + TSS region transcription start site region 68016
Tssr68017 7 98490557 to 98490596 39 + TSS region transcription start site region 68017
Tssr73633 7 98491800 to 98491815 15 - TSS region transcription start site region 73633
Tssr68018 7 98491949 to 98491961 12 + TSS region transcription start site region 68018
Tssr68019 7 98491970 to 98491998 28 + TSS region transcription start site region 68019
Tssr73634 7 98492888 to 98492895 7 - TSS region transcription start site region 73634
Tssr68020 7 98500905 to 98500909 4 + TSS region transcription start site region 68020
Gm33394 7 98502588 to 98506647 4059 - lncRNA gene predicted gene, 33394
Tssr68021 7 98506951 to 98506957 6 + TSS region transcription start site region 68021
Gm23040 7 98506954 to 98507116 162 + snRNA gene predicted gene, 23040
Tssr68022 7 98531925 to 98531949 24 + TSS region transcription start site region 68022
Tssr68023 7 98533286 to 98533315 29 + TSS region transcription start site region 68023
Tssr73635 7 98533812 to 98533845 33 - TSS region transcription start site region 73635
Cpgi19447 7 98534426 to 98534592 166 CpG island CpG island 19447
Tssr73636 7 98539130 to 98539137 7 - TSS region transcription start site region 73636
Tssr68024 7 98539394 to 98539404 10 + TSS region transcription start site region 68024
A630091E08Rik 7 98543320 to 98562990 19670 - lincRNA gene RIKEN cDNA A630091E08 gene
Tssr73637 7 98562333 to 98562351 18 - TSS region transcription start site region 73637
Tssr73638 7 98562353 to 98562366 13 - TSS region transcription start site region 73638
Tssr73639 7 98562982 to 98563004 22 - TSS region transcription start site region 73639
Tssr73640 7 98563016 to 98563026 10 - TSS region transcription start site region 73640
Tssr68025 7 98563162 to 98563170 8 + TSS region transcription start site region 68025
Tssr68026 7 98563189 to 98563196 7 + TSS region transcription start site region 68026
Tssr68027 7 98563227 to 98563236 9 + TSS region transcription start site region 68027
Emsy 7 98587137 to 98656783 69646 - protein coding gene EMSY, BRCA2-interacting transcriptional repressor
Cpgi19448 7 98655558 to 98657298 1740 CpG island CpG island 19448
Tssr68028 7 98655817 to 98655853 36 + TSS region transcription start site region 68028
Tssr68029 7 98656145 to 98656159 14 + TSS region transcription start site region 68029
Tssr68030 7 98656174 to 98656201 27 + TSS region transcription start site region 68030
4930558N01Rik 7 98656198 to 98657829 1631 unclassified gene RIKEN cDNA 4930558N01 gene
Tssr73641 7 98656515 to 98656524 9 - TSS region transcription start site region 73641
Tssr73642 7 98656530 to 98656600 70 - TSS region transcription start site region 73642
Tssr73643 7 98656792 to 98656813 21 - TSS region transcription start site region 73643
Tssr68031 7 98656901 to 98656946 45 + TSS region transcription start site region 68031
Tssr73644 7 98665347 to 98665348 1 - TSS region transcription start site region 73644
Gm45132 7 98678106 to 98680647 2541 - unclassified gene predicted gene 45132
Gm15506 7 98682331 to 98693341 11010 - unclassified non-coding RNA gene predicted gene 15506
Tssr73645 7 98694191 to 98694215 24 - TSS region transcription start site region 73645
Tssr73646 7 98694222 to 98694233 11 - TSS region transcription start site region 73646
Cpgi19449 7 98702565 to 98703810 1245 CpG island CpG island 19449
Tssr73647 7 98702849 to 98702874 25 - TSS region transcription start site region 73647
Tssr73648 7 98702882 to 98702893 11 - TSS region transcription start site region 73648
Tssr73649 7 98702899 to 98702934 35 - TSS region transcription start site region 73649
Tssr68032 7 98703091 to 98703137 46 + TSS region transcription start site region 68032
Thap12 7 98703128 to 98718062 14934 + protein coding gene THAP domain containing 12
Tssr68033 7 98703159 to 98703170 11 + TSS region transcription start site region 68033
Tssr68034 7 98703239 to 98703292 53 + TSS region transcription start site region 68034
Tssr68035 7 98703298 to 98703312 14 + TSS region transcription start site region 68035
Gm19656 7 98719498 to 98727090 7592 - lincRNA gene predicted gene, 19656
Cpgi19450 7 98729995 to 98730430 435 CpG island CpG island 19450
Gm44934 7 98734747 to 98735081 334 - lincRNA gene predicted gene 44934
Gm19250 7 98761481 to 98761940 459 + pseudogene predicted gene, 19250
Gm33720 7 98763018 to 98769841 6823 + lncRNA gene predicted gene, 33720
Cpgi19451 7 98814883 to 98815456 573 CpG island CpG island 19451
n-TPtgg8 7 98815415 to 98815486 71 + tRNA gene nuclear encoded tRNA proline 8 (anticodon TGG)
n-TPagg7 7 98815676 to 98815747 71 - tRNA gene nuclear encoded tRNA proline 7 (anticodon AGG)
Cpgi19452 7 98815751 to 98816706 955 CpG island CpG island 19452
Gm39054 7 98816131 to 98821934 5803 + lncRNA gene predicted gene, 39054
Gm33770 7 98830658 to 98836055 5397 - lncRNA gene predicted gene, 33770
Cpgi19453 7 98834517 to 98837134 2617 CpG island CpG island 19453
Wnt11 7 98834916 to 98854747 19831 + protein coding gene wingless-type MMTV integration site family, member 11
Tssr68036 7 98835104 to 98835119 15 + TSS region transcription start site region 68036
Cpgi19454 7 98837964 to 98838366 402 CpG island CpG island 19454
Cpgi19455 7 98838592 to 98839715 1123 CpG island CpG island 19455
Tssr68037 7 98838995 to 98839010 15 + TSS region transcription start site region 68037
Cpgi19456 7 98846299 to 98846744 445 CpG island CpG island 19456
Gm8398 7 98854732 to 98855095 363 - pseudogene predicted gene 8398
Gm33827 7 98869260 to 98876632 7372 - lncRNA gene predicted gene, 33827
Uvrag 7 98886742 to 99141168 254426 - protein coding gene UV radiation resistance associated gene
Cpgi19457 7 98887834 to 98888288 454 CpG island CpG island 19457
Tssr68038 7 98889910 to 98889913 3 + TSS region transcription start site region 68038
Gm8149 7 98895217 to 98906485 11268 + unclassified gene predicted gene 8149
Tssr68039 7 98895928 to 98895933 5 + TSS region transcription start site region 68039
Gm45188 7 98895930 to 98899545 3615 + antisense lncRNA gene predicted gene 45188
Gm45187 7 98904268 to 98908055 3787 + antisense lncRNA gene predicted gene 45187
Gm39055 7 98906590 to 98910998 4408 + lncRNA gene predicted gene, 39055
D7Mit354 7 98911768 to 98911890 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 354
Tssr73650 7 98931199 to 98931202 3 - TSS region transcription start site region 73650
Gm23479 7 98935894 to 98936015 121 + snoRNA gene predicted gene, 23479
Tssr73651 7 98943353 to 98943359 6 - TSS region transcription start site region 73651
Tssr73652 7 98975974 to 98975997 23 - TSS region transcription start site region 73652
Tssr73653 7 98993549 to 98993551 2 - TSS region transcription start site region 73653
Tssr73654 7 99020432 to 99020439 7 - TSS region transcription start site region 73654
Tssr73655 7 99049942 to 99049983 41 - TSS region transcription start site region 73655
Gm33882 7 99090232 to 99090882 650 + pseudogene predicted gene, 33882
Tssr73656 7 99116757 to 99116762 5 - TSS region transcription start site region 73656
Gm44975 7 99122070 to 99123459 1389 - unclassified gene predicted gene 44975
Tssr73657 7 99131745 to 99131747 2 - TSS region transcription start site region 73657
Cpgi19458 7 99140493 to 99141733 1240 CpG island CpG island 19458
Tssr73658 7 99141068 to 99141149 81 - TSS region transcription start site region 73658
Tssr73659 7 99141266 to 99141294 28 - TSS region transcription start site region 73659
Gm45185 7 99141593 to 99141996 403 + unclassified gene predicted gene 45185
Dgat2 7 99153663 to 99182713 29050 - protein coding gene diacylglycerol O-acyltransferase 2
Tssr73660 7 99157051 to 99157078 27 - TSS region transcription start site region 73660
Tssr73661 7 99159048 to 99159062 14 - TSS region transcription start site region 73661
Tssr73662 7 99162219 to 99162223 4 - TSS region transcription start site region 73662
Tssr68040 7 99164383 to 99164389 6 + TSS region transcription start site region 68040
Tssr73663 7 99164661 to 99164692 31 - TSS region transcription start site region 73663
Tssr73664 7 99169814 to 99169836 22 - TSS region transcription start site region 73664
Tssr73665 7 99170041 to 99170045 4 - TSS region transcription start site region 73665
D7Mit185 7 99180038 to 99180164 126 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 185
Tssr73666 7 99180265 to 99180319 54 - TSS region transcription start site region 73666
Cpgi19459 7 99182029 to 99183222 1193 CpG island CpG island 19459
Tssr73667 7 99182655 to 99182666 11 - TSS region transcription start site region 73667
Tssr73668 7 99182681 to 99182728 47 - TSS region transcription start site region 73668
Tssr73669 7 99182735 to 99182746 11 - TSS region transcription start site region 73669
Tssr73670 7 99183840 to 99183860 20 - TSS region transcription start site region 73670
Gm45012 7 99202366 to 99227080 24714 + antisense lncRNA gene predicted gene 45012
Tssr68041 7 99202402 to 99202426 24 + TSS region transcription start site region 68041
Mogat2 7 99219084 to 99238611 19527 - protein coding gene monoacylglycerol O-acyltransferase 2
Tssr73671 7 99223588 to 99223595 7 - TSS region transcription start site region 73671
Tssr73672 7 99229626 to 99229630 4 - TSS region transcription start site region 73672
Tssr73673 7 99238564 to 99238623 59 - TSS region transcription start site region 73673
Gm18943 7 99247605 to 99248820 1215 - pseudogene predicted gene, 18943
Cpgi19460 7 99248893 to 99249373 480 CpG island CpG island 19460
Gm34062 7 99251512 to 99255191 3679 + lncRNA gene predicted gene, 34062
Gm26705 7 99260481 to 99267218 6737 - lincRNA gene predicted gene, 26705
Cpgi19461 7 99267338 to 99269546 2208 CpG island CpG island 19461
Tssr68042 7 99267397 to 99267406 9 + TSS region transcription start site region 68042
Tssr68043 7 99267428 to 99267438 10 + TSS region transcription start site region 68043
Map6 7 99267447 to 99337137 69690 + protein coding gene microtubule-associated protein 6
Tssr68044 7 99267470 to 99267517 47 + TSS region transcription start site region 68044
Tssr68045 7 99267553 to 99267564 11 + TSS region transcription start site region 68045
Tssr68046 7 99268338 to 99268388 50 + TSS region transcription start site region 68046
Tssr68047 7 99268392 to 99268420 28 + TSS region transcription start site region 68047
Tssr68048 7 99269071 to 99269086 15 + TSS region transcription start site region 68048
Tssr68049 7 99269115 to 99269129 14 + TSS region transcription start site region 68049
Tssr68050 7 99269179 to 99269200 21 + TSS region transcription start site region 68050
Tssr68051 7 99296521 to 99296523 2 + TSS region transcription start site region 68051
Gm40449 7 99300274 to 99304493 4219 - lncRNA gene predicted gene, 40449
Tssr68052 7 99313393 to 99313423 30 + TSS region transcription start site region 68052
D7Mit149 7 99314877 to 99315026 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 149
Gm45591 7 99321200 to 99322455 1255 + sense intronic lncRNA gene predicted gene 45591
Tssr68053 7 99323185 to 99323191 6 + TSS region transcription start site region 68053
Tssr68054 7 99334811 to 99334812 1 + TSS region transcription start site region 68054
Serpinh1 7 99345376 to 99353239 7863 - protein coding gene serine (or cysteine) peptidase inhibitor, clade H, member 1
Tssr73674 7 99345487 to 99345519 32 - TSS region transcription start site region 73674
Tssr73675 7 99345995 to 99346009 14 - TSS region transcription start site region 73675
Tssr73676 7 99347136 to 99347166 30 - TSS region transcription start site region 73676
Cpgi19462 7 99348756 to 99349238 482 CpG island CpG island 19462
Tssr68055 7 99348914 to 99348931 17 + TSS region transcription start site region 68055
Tssr73677 7 99348998 to 99349049 51 - TSS region transcription start site region 73677
Tssr73678 7 99349078 to 99349103 25 - TSS region transcription start site region 73678
Tssr73679 7 99349121 to 99349152 31 - TSS region transcription start site region 73679
Tssr73680 7 99349165 to 99349177 12 - TSS region transcription start site region 73680
Tssr73681 7 99350162 to 99350168 6 - TSS region transcription start site region 73681
Cpgi19463 7 99352751 to 99353152 401 CpG island CpG island 19463
Tssr73682 7 99353104 to 99353121 17 - TSS region transcription start site region 73682
Tssr2336 7 99353223 to 99353234 11 - TSS region transcription start site region 2336
Cpgi19464 7 99380986 to 99382411 1425 CpG island CpG island 19464
Gdpd5 7 99381415 to 99460984 79569 + protein coding gene glycerophosphodiester phosphodiesterase domain containing 5
Tssr68056 7 99381495 to 99381555 60 + TSS region transcription start site region 68056
Tssr73683 7 99382297 to 99382313 16 - TSS region transcription start site region 73683
Tssr73684 7 99382320 to 99382340 20 - TSS region transcription start site region 73684
Klhl35 7 99466004 to 99474022 8018 + protein coding gene kelch-like 35
Tssr68057 7 99466021 to 99466032 11 + TSS region transcription start site region 68057
Cpgi19465 7 99467566 to 99467725 159 CpG island CpG island 19465
Cpgi19466 7 99468000 to 99469300 1300 CpG island CpG island 19466
Cpgi19467 7 99471667 to 99472005 338 CpG island CpG island 19467
Rps3 7 99477896 to 99483709 5813 - protein coding gene ribosomal protein S3
Tssr73685 7 99478596 to 99478599 3 - TSS region transcription start site region 73685
Tssr68058 7 99478881 to 99478916 35 + TSS region transcription start site region 68058
Snord15b 7 99479563 to 99479707 144 - snoRNA gene small nucleolar RNA, C/D box 14B
Tssr73686 7 99479702 to 99479707 5 - TSS region transcription start site region 73686
Tssr73687 7 99480008 to 99480029 21 - TSS region transcription start site region 73687
Tssr73688 7 99482323 to 99482334 11 - TSS region transcription start site region 73688
Snord15a 7 99482785 to 99482932 147 - snoRNA gene small nucleolar RNA, C/D box 15A
Tssr73689 7 99482926 to 99482934 8 - TSS region transcription start site region 73689
Cpgi19468 7 99483151 to 99483730 579 CpG island CpG island 19468
Tssr73690 7 99483645 to 99483654 9 - TSS region transcription start site region 73690
n-R5s156 7 99497718 to 99497822 104 + rRNA gene nuclear encoded rRNA 5S 156
Gm39056 7 99500464 to 99505945 5481 + lncRNA gene predicted gene, 39056
D7Dcr42 7 99511327 to 99511446 119 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 42
D7Mit353 7 99511336 to 99511445 109 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 353
Gm40450 7 99511650 to 99517153 5503 + lncRNA gene predicted gene, 40450