Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:98236925-98826949

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acer3 7 98213660 to 98309548 95888 - protein coding gene alkaline ceramidase 3
Tssr73617 7 98272070 to 98272075 5 - TSS region transcription start site region 73617
Tssr73618 7 98282392 to 98282404 12 - TSS region transcription start site region 73618
Tssr73619 7 98284095 to 98284096 1 - TSS region transcription start site region 73619
Tssr73620 7 98291122 to 98291154 32 - TSS region transcription start site region 73620
Cpgi19444 7 98308775 to 98309836 1061 CpG island CpG island 19444
Tssr73621 7 98309471 to 98309514 43 - TSS region transcription start site region 73621
Tssr73622 7 98321181 to 98321207 26 - TSS region transcription start site region 73622
Tssr68011 7 98334156 to 98334179 23 + TSS region transcription start site region 68011
Tsku 7 98350668 to 98361328 10660 - protein coding gene tsukushi, small leucine rich proteoglycan
Tssr73623 7 98350938 to 98350944 6 - TSS region transcription start site region 73623
Cpgi19445 7 98359868 to 98361642 1774 CpG island CpG island 19445
Tssr73624 7 98360435 to 98360470 35 - TSS region transcription start site region 73624
Tssr73625 7 98361248 to 98361255 7 - TSS region transcription start site region 73625
Tssr73626 7 98361275 to 98361295 20 - TSS region transcription start site region 73626
Tssr73627 7 98361310 to 98361320 10 - TSS region transcription start site region 73627
Tssr73628 7 98361327 to 98361343 16 - TSS region transcription start site region 73628
Tssr73629 7 98361393 to 98361401 8 - TSS region transcription start site region 73629
Tssr73630 7 98361495 to 98361504 9 - TSS region transcription start site region 73630
Tssr68012 7 98371737 to 98371745 8 + TSS region transcription start site region 68012
Tssr73631 7 98379266 to 98379272 6 - TSS region transcription start site region 73631
Gm44507 7 98388091 to 98415624 27533 - lincRNA gene predicted gene 44507
Tssr73632 7 98415622 to 98415625 3 - TSS region transcription start site region 73632
Gm39053 7 98433482 to 98437946 4464 + lncRNA gene predicted gene, 39053
Gm44980 7 98437206 to 98437519 313 - pseudogene predicted gene 44980
Gucy2d 7 98440416 to 98477479 37063 + protein coding gene guanylate cyclase 2d
Tssr68013 7 98455106 to 98455140 34 + TSS region transcription start site region 68013
Gm2926 7 98455260 to 98455498 238 + pseudogene predicted gene 2926
Gm44978 7 98465130 to 98465446 316 - pseudogene predicted gene 44978
Gm38588 7 98481265 to 98486221 4956 + lncRNA gene predicted gene, 38588
Tssr68014 7 98486894 to 98486901 7 + TSS region transcription start site region 68014
Lrrc32 7 98489301 to 98501831 12530 + protein coding gene leucine rich repeat containing 32
Cpgi19446 7 98489502 to 98490543 1041 CpG island CpG island 19446
Tssr68015 7 98489983 to 98490001 18 + TSS region transcription start site region 68015
Tssr68016 7 98490028 to 98490039 11 + TSS region transcription start site region 68016
Tssr68017 7 98490557 to 98490596 39 + TSS region transcription start site region 68017
Tssr73633 7 98491800 to 98491815 15 - TSS region transcription start site region 73633
Tssr68018 7 98491949 to 98491961 12 + TSS region transcription start site region 68018
Tssr68019 7 98491970 to 98491998 28 + TSS region transcription start site region 68019
Tssr73634 7 98492888 to 98492895 7 - TSS region transcription start site region 73634
Tssr68020 7 98500905 to 98500909 4 + TSS region transcription start site region 68020
Gm33394 7 98502588 to 98506647 4059 - lncRNA gene predicted gene, 33394
Tssr68021 7 98506951 to 98506957 6 + TSS region transcription start site region 68021
Gm23040 7 98506954 to 98507116 162 + snRNA gene predicted gene, 23040
Tssr68022 7 98531925 to 98531949 24 + TSS region transcription start site region 68022
Tssr68023 7 98533286 to 98533315 29 + TSS region transcription start site region 68023
Tssr73635 7 98533812 to 98533845 33 - TSS region transcription start site region 73635
Cpgi19447 7 98534426 to 98534592 166 CpG island CpG island 19447
Tssr73636 7 98539130 to 98539137 7 - TSS region transcription start site region 73636
Tssr68024 7 98539394 to 98539404 10 + TSS region transcription start site region 68024
A630091E08Rik 7 98543320 to 98562990 19670 - lincRNA gene RIKEN cDNA A630091E08 gene
Tssr73637 7 98562333 to 98562351 18 - TSS region transcription start site region 73637
Tssr73638 7 98562353 to 98562366 13 - TSS region transcription start site region 73638
Tssr73639 7 98562982 to 98563004 22 - TSS region transcription start site region 73639
Tssr73640 7 98563016 to 98563026 10 - TSS region transcription start site region 73640
Tssr68025 7 98563162 to 98563170 8 + TSS region transcription start site region 68025
Tssr68026 7 98563189 to 98563196 7 + TSS region transcription start site region 68026
Tssr68027 7 98563227 to 98563236 9 + TSS region transcription start site region 68027
Emsy 7 98587137 to 98656783 69646 - protein coding gene EMSY, BRCA2-interacting transcriptional repressor
Cpgi19448 7 98655558 to 98657298 1740 CpG island CpG island 19448
Tssr68028 7 98655817 to 98655853 36 + TSS region transcription start site region 68028
Tssr68029 7 98656145 to 98656159 14 + TSS region transcription start site region 68029
Tssr68030 7 98656174 to 98656201 27 + TSS region transcription start site region 68030
4930558N01Rik 7 98656198 to 98657829 1631 unclassified gene RIKEN cDNA 4930558N01 gene
Tssr73641 7 98656515 to 98656524 9 - TSS region transcription start site region 73641
Tssr73642 7 98656530 to 98656600 70 - TSS region transcription start site region 73642
Tssr73643 7 98656792 to 98656813 21 - TSS region transcription start site region 73643
Tssr68031 7 98656901 to 98656946 45 + TSS region transcription start site region 68031
Tssr73644 7 98665347 to 98665348 1 - TSS region transcription start site region 73644
Gm45132 7 98678106 to 98680647 2541 - unclassified gene predicted gene 45132
Gm15506 7 98682331 to 98693341 11010 - unclassified non-coding RNA gene predicted gene 15506
Tssr73645 7 98694191 to 98694215 24 - TSS region transcription start site region 73645
Tssr73646 7 98694222 to 98694233 11 - TSS region transcription start site region 73646
Cpgi19449 7 98702565 to 98703810 1245 CpG island CpG island 19449
Tssr73647 7 98702849 to 98702874 25 - TSS region transcription start site region 73647
Tssr73648 7 98702882 to 98702893 11 - TSS region transcription start site region 73648
Tssr73649 7 98702899 to 98702934 35 - TSS region transcription start site region 73649
Tssr68032 7 98703091 to 98703137 46 + TSS region transcription start site region 68032
Thap12 7 98703128 to 98718062 14934 + protein coding gene THAP domain containing 12
Tssr68033 7 98703159 to 98703170 11 + TSS region transcription start site region 68033
Tssr68034 7 98703239 to 98703292 53 + TSS region transcription start site region 68034
Tssr68035 7 98703298 to 98703312 14 + TSS region transcription start site region 68035
Gm19656 7 98719498 to 98727090 7592 - lincRNA gene predicted gene, 19656
Cpgi19450 7 98729995 to 98730430 435 CpG island CpG island 19450
Gm44934 7 98734747 to 98735081 334 - lincRNA gene predicted gene 44934
Gm19250 7 98761481 to 98761940 459 + pseudogene predicted gene, 19250
Gm33720 7 98763018 to 98769841 6823 + lncRNA gene predicted gene, 33720
Cpgi19451 7 98814883 to 98815456 573 CpG island CpG island 19451
n-TPtgg8 7 98815415 to 98815486 71 + tRNA gene nuclear encoded tRNA proline 8 (anticodon TGG)
n-TPagg7 7 98815676 to 98815747 71 - tRNA gene nuclear encoded tRNA proline 7 (anticodon AGG)
Cpgi19452 7 98815751 to 98816706 955 CpG island CpG island 19452
Gm39054 7 98816131 to 98821934 5803 + lncRNA gene predicted gene, 39054