Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:97340197-98130222

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
chtl 7 87493929 to 97902584 10408655 heritable phenotypic marker chocolate-like
Kctd21 7 97332327 to 97350213 17886 + protein coding gene potassium channel tetramerisation domain containing 21
Cpgi19425 7 97371391 to 97371926 535 CpG island CpG island 19425
Tssr67966 7 97371592 to 97371601 9 + TSS region transcription start site region 67966
Alg8 7 97371594 to 97392159 20565 + protein coding gene asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)
Tssr67967 7 97371604 to 97371640 36 + TSS region transcription start site region 67967
Cpgi19426 7 97399862 to 97400635 773 CpG island CpG island 19426
Ndufc2 7 97400003 to 97407800 7797 + protein coding gene NADH:ubiquinone oxidoreductase subunit C2
Tssr67968 7 97400044 to 97400047 3 + TSS region transcription start site region 67968
Tssr67969 7 97400049 to 97400115 66 + TSS region transcription start site region 67969
Tssr67970 7 97400125 to 97400136 11 + TSS region transcription start site region 67970
Tssr67971 7 97400168 to 97400178 10 + TSS region transcription start site region 67971
Gm16053 7 97406140 to 97406327 187 + pseudogene predicted gene 16053
Thrsp 7 97412933 to 97417550 4617 - protein coding gene thyroid hormone responsive
Tssr73576 7 97413417 to 97413435 18 - TSS region transcription start site region 73576
Tssr73577 7 97413596 to 97413601 5 - TSS region transcription start site region 73577
Cpgi19427 7 97417094 to 97417548 454 CpG island CpG island 19427
Tssr2334 7 97417461 to 97417469 8 - TSS region transcription start site region 2334
Tssr73578 7 97417511 to 97417539 28 - TSS region transcription start site region 73578
Gm32945 7 97418653 to 97420144 1491 + lncRNA gene predicted gene, 32945
Tssr73579 7 97420957 to 97420980 23 - TSS region transcription start site region 73579
Tssr67972 7 97451267 to 97451270 3 + TSS region transcription start site region 67972
Tssr67973 7 97451300 to 97451309 9 + TSS region transcription start site region 67973
Tssr67974 7 97451316 to 97451331 15 + TSS region transcription start site region 67974
Kctd14 7 97451323 to 97459557 8234 + protein coding gene potassium channel tetramerisation domain containing 14
Tssr67975 7 97451432 to 97451441 9 + TSS region transcription start site region 67975
Tssr67976 7 97453235 to 97453303 68 + TSS region transcription start site region 67976
Cpgi19428 7 97453342 to 97453588 246 CpG island CpG island 19428
7030407A21Rik 7 97455265 to 97456712 1447 unclassified gene RIKEN cDNA 7030407A21 gene
Cpgi19429 7 97457877 to 97458076 199 CpG island CpG island 19429
Tssr67977 7 97480906 to 97480917 11 + TSS region transcription start site region 67977
Tssr67978 7 97480920 to 97480927 7 + TSS region transcription start site region 67978
Tssr67979 7 97480928 to 97480966 38 + TSS region transcription start site region 67979
Cpgi19430 7 97480935 to 97481319 384 CpG island CpG island 19430
Ints4 7 97480956 to 97541395 60439 + protein coding gene integrator complex subunit 4
Tssr67980 7 97480994 to 97481078 84 + TSS region transcription start site region 67980
Tssr67981 7 97494067 to 97494072 5 + TSS region transcription start site region 67981
Gm24412 7 97521808 to 97521916 108 + snoRNA gene predicted gene, 24412
Tssr67982 7 97536214 to 97536227 13 + TSS region transcription start site region 67982
Tssr73580 7 97549777 to 97549790 13 - TSS region transcription start site region 73580
Aamdc 7 97550331 to 97579497 29166 - protein coding gene adipogenesis associated Mth938 domain containing
Tssr73581 7 97578764 to 97578767 3 - TSS region transcription start site region 73581
Cpgi19431 7 97579169 to 97580645 1476 CpG island CpG island 19431
Tssr73582 7 97579428 to 97579501 73 - TSS region transcription start site region 73582
Tssr67983 7 97579560 to 97579609 49 + TSS region transcription start site region 67983
Tssr67984 7 97579868 to 97579901 33 + TSS region transcription start site region 67984
Rsf1 7 97579889 to 97692778 112889 + protein coding gene remodeling and spacing factor 1
Cpgi19432 7 97580989 to 97581278 289 CpG island CpG island 19432
Tssr67985 7 97590214 to 97590218 4 + TSS region transcription start site region 67985
Ywhaq-ps1 7 97591693 to 97592402 709 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 1
Rpl15-ps5 7 97594837 to 97595441 604 - pseudogene ribosomal protein L15, pseudogene 5
Rsf1os1 7 97598349 to 97645112 46763 - antisense lncRNA gene remodeling and spacing factor 1, opposite strand 1
Tssr67986 7 97637688 to 97637691 3 + TSS region transcription start site region 67986
Tssr73583 7 97645120 to 97645135 15 - TSS region transcription start site region 73583
C920008N22Rik 7 97649002 to 97652316 3314 unclassified gene RIKEN cDNA C920008N22 gene
Gm45186 7 97654276 to 97654753 477 - pseudogene predicted gene 45186
Rsf1os2 7 97681850 to 97696640 14790 - antisense lncRNA gene remodeling and spacing factor 1, opposite strand 2
Cpgi19433 7 97696063 to 97697336 1273 CpG island CpG island 19433
Tssr67987 7 97696645 to 97696725 80 + TSS region transcription start site region 67987
Clns1a 7 97696657 to 97720793 24136 + protein coding gene chloride channel, nucleotide-sensitive, 1A
Tssr73584 7 97721515 to 97721518 3 - TSS region transcription start site region 73584
Tssr67988 7 97724131 to 97724140 9 + TSS region transcription start site region 67988
Aqp11 7 97726379 to 97738247 11868 - protein coding gene aquaporin 11
Tssr73585 7 97729069 to 97729080 11 - TSS region transcription start site region 73585
Tssr73586 7 97729370 to 97729394 24 - TSS region transcription start site region 73586
Tssr73587 7 97730641 to 97730660 19 - TSS region transcription start site region 73587
Tssr67989 7 97735197 to 97735222 25 + TSS region transcription start site region 67989
Cpgi19434 7 97737521 to 97738594 1073 CpG island CpG island 19434
Tssr73588 7 97737611 to 97737631 20 - TSS region transcription start site region 73588
Tssr73589 7 97737977 to 97737984 7 - TSS region transcription start site region 73589
Tssr73590 7 97737994 to 97738056 62 - TSS region transcription start site region 73590
Tssr73591 7 97738222 to 97738317 95 - TSS region transcription start site region 73591
Cpgi19435 7 97748174 to 97748431 257 CpG island CpG island 19435
Tssr67990 7 97749797 to 97749806 9 + TSS region transcription start site region 67990
Gm39050 7 97759324 to 97801159 41835 - lncRNA gene predicted gene, 39050
Cpgi19436 7 97788108 to 97789439 1331 CpG island CpG island 19436
Tssr67991 7 97788348 to 97788390 42 + TSS region transcription start site region 67991
Tssr67992 7 97788489 to 97788582 93 + TSS region transcription start site region 67992
Tssr67993 7 97788592 to 97788616 24 + TSS region transcription start site region 67993
Tssr67994 7 97788785 to 97788834 49 + TSS region transcription start site region 67994
Tssr67995 7 97789508 to 97789516 8 + TSS region transcription start site region 67995
Tssr67996 7 97790793 to 97790800 7 + TSS region transcription start site region 67996
Tssr67997 7 97830919 to 97830930 11 + TSS region transcription start site region 67997
Pak1 7 97830931 to 97912381 81450 + protein coding gene p21 (RAC1) activated kinase 1
Tssr67998 7 97830943 to 97830967 24 + TSS region transcription start site region 67998
Tssr67999 7 97830979 to 97831005 26 + TSS region transcription start site region 67999
Tssr68000 7 97842905 to 97842912 7 + TSS region transcription start site region 68000
Tssr68001 7 97842917 to 97842980 63 + TSS region transcription start site region 68001
Cpgi19437 7 97842941 to 97843098 157 CpG island CpG island 19437
Tssr68002 7 97843007 to 97843016 9 + TSS region transcription start site region 68002
Tssr68003 7 97843039 to 97843059 20 + TSS region transcription start site region 68003
Tssr68004 7 97843088 to 97843108 20 + TSS region transcription start site region 68004
Tssr68005 7 97870755 to 97870756 1 + TSS region transcription start site region 68005
D7Dcr41 7 97902468 to 97902575 107 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 41
D7Mit321 7 97902474 to 97902584 110 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 321
Cctq1 7 97902474 to 97902584 110 QTL central corneal thickness QTL 1
Morq1 7 97902474 to 97902584 110 QTL modifier of Rs1 QTL 1
Tssr68006 7 97911106 to 97911132 26 + TSS region transcription start site region 68006
Gm44590 7 97918245 to 97918635 390 + pseudogene predicted gene 44590
Cpgi19438 7 97919899 to 97920056 157 CpG island CpG island 19438
Tssr68007 7 97919949 to 97919966 17 + TSS region transcription start site region 68007
Gdpd4 7 97919955 to 98049663 129708 + protein coding gene glycerophosphodiester phosphodiesterase domain containing 4
Tssr68008 7 97919971 to 97919991 20 + TSS region transcription start site region 68008
Gm19204 7 97984558 to 97985393 835 - pseudogene predicted gene, 19204
Myo7a 7 98051060 to 98119524 68464 - protein coding gene myosin VIIA
D7Smh12 7 98082901 to 98083125 224 DNA segment DNA segment, Chr 7, St. Mary's Hospital 12
Cpgi19439 7 98084582 to 98084749 167 CpG island CpG island 19439
Tssr73592 7 98085443 to 98085454 11 - TSS region transcription start site region 73592
Tssr73593 7 98085473 to 98085519 46 - TSS region transcription start site region 73593
Tssr73594 7 98096413 to 98096426 13 - TSS region transcription start site region 73594
Tssr73595 7 98097672 to 98097689 17 - TSS region transcription start site region 73595
Cpgi19440 7 98103087 to 98103634 547 CpG island CpG island 19440
Tssr68009 7 98104939 to 98104986 47 + TSS region transcription start site region 68009
Cpgi19441 7 98111200 to 98111640 440 CpG island CpG island 19441
Tssr73596 7 98111431 to 98111445 14 - TSS region transcription start site region 73596
Tssr73597 7 98111452 to 98111461 9 - TSS region transcription start site region 73597
Tssr73598 7 98111462 to 98111476 14 - TSS region transcription start site region 73598
Tssr73599 7 98112618 to 98112636 18 - TSS region transcription start site region 73599
Tssr2335 7 98112730 to 98112739 9 - TSS region transcription start site region 2335
Tssr73600 7 98117755 to 98117766 11 - TSS region transcription start site region 73600
Tssr73601 7 98117772 to 98117810 38 - TSS region transcription start site region 73601
Tssr73602 7 98117817 to 98117833 16 - TSS region transcription start site region 73602
Tssr73603 7 98119428 to 98119437 9 - TSS region transcription start site region 73603
Tssr73604 7 98119482 to 98119502 20 - TSS region transcription start site region 73604
Tssr73605 7 98119517 to 98119527 10 - TSS region transcription start site region 73605
Capn5 7 98121559 to 98178274 56715 - protein coding gene calpain 5