Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:88250755-90340864

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277 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rta1 7 67518279 to 89440781 21922502 QTL retinal aging 1
Cpgi19388 7 88277945 to 88278400 455 CpG island CpG island 19388
Ctsc 7 88278085 to 88310888 32803 + protein coding gene cathepsin C
Tssr67623 7 88278126 to 88278141 15 + TSS region transcription start site region 67623
Tssr67624 7 88278780 to 88278788 8 + TSS region transcription start site region 67624
Gm26522 7 88278787 to 88283529 4742 - lincRNA gene predicted gene, 26522
Tssr67625 7 88280494 to 88280538 44 + TSS region transcription start site region 67625
Tssr67626 7 88280582 to 88280592 10 + TSS region transcription start site region 67626
Tssr67627 7 88280608 to 88280621 13 + TSS region transcription start site region 67627
Tssr67628 7 88280969 to 88280974 5 + TSS region transcription start site region 67628
Tssr67629 7 88281379 to 88281505 126 + TSS region transcription start site region 67629
Tssr67630 7 88283898 to 88283916 18 + TSS region transcription start site region 67630
Tssr67631 7 88288750 to 88288761 11 + TSS region transcription start site region 67631
Tssr67632 7 88288943 to 88288955 12 + TSS region transcription start site region 67632
Tssr67633 7 88288971 to 88288984 13 + TSS region transcription start site region 67633
Tssr67634 7 88290451 to 88290461 10 + TSS region transcription start site region 67634
Tssr67635 7 88290597 to 88290607 10 + TSS region transcription start site region 67635
Tssr67636 7 88290825 to 88290838 13 + TSS region transcription start site region 67636
Tssr67637 7 88290873 to 88290888 15 + TSS region transcription start site region 67637
Tssr67638 7 88290897 to 88290913 16 + TSS region transcription start site region 67638
Tssr67639 7 88290955 to 88290964 9 + TSS region transcription start site region 67639
Tssr67640 7 88290999 to 88291012 13 + TSS region transcription start site region 67640
Tssr67641 7 88297091 to 88297102 11 + TSS region transcription start site region 67641
Tssr67642 7 88297133 to 88297176 43 + TSS region transcription start site region 67642
Tssr67643 7 88297185 to 88297197 12 + TSS region transcription start site region 67643
Tssr67644 7 88297204 to 88297217 13 + TSS region transcription start site region 67644
Tssr67645 7 88297245 to 88297257 12 + TSS region transcription start site region 67645
Tssr73464 7 88299467 to 88299485 18 - TSS region transcription start site region 73464
Tssr67646 7 88299483 to 88299495 12 + TSS region transcription start site region 67646
Tssr73465 7 88299492 to 88299506 14 - TSS region transcription start site region 73465
Tssr73466 7 88299532 to 88299559 27 - TSS region transcription start site region 73466
Tssr67647 7 88302181 to 88302203 22 + TSS region transcription start site region 67647
Tssr73467 7 88302214 to 88302233 19 - TSS region transcription start site region 73467
Tssr67648 7 88302263 to 88302275 12 + TSS region transcription start site region 67648
Tssr67649 7 88308049 to 88308058 9 + TSS region transcription start site region 67649
Tssr73468 7 88308078 to 88308102 24 - TSS region transcription start site region 73468
Tssr67650 7 88308109 to 88308127 18 + TSS region transcription start site region 67650
Tssr67651 7 88309458 to 88309477 19 + TSS region transcription start site region 67651
Tssr67652 7 88309685 to 88309692 7 + TSS region transcription start site region 67652
Tssr67653 7 88309806 to 88309823 17 + TSS region transcription start site region 67653
Tssr67654 7 88309922 to 88309943 21 + TSS region transcription start site region 67654
Tssr67655 7 88309973 to 88309981 8 + TSS region transcription start site region 67655
Gm44751 7 88311478 to 88315864 4386 + lincRNA gene predicted gene 44751
Gm25345 7 88343969 to 88344101 132 + snoRNA gene predicted gene, 25345
C330001P17Rik 7 88348144 to 88349055 911 unclassified gene RIKEN cDNA C330001P17 gene
Gm2407 7 88349311 to 88356590 7279 - pseudogene predicted gene 2407
Cpgi19389 7 88430243 to 88430739 496 CpG island CpG island 19389
Tssr67656 7 88430257 to 88430286 29 + TSS region transcription start site region 67656
Rab38 7 88430273 to 88491572 61299 + protein coding gene RAB38, member RAS oncogene family
Tssr67657 7 88430299 to 88430320 21 + TSS region transcription start site region 67657
Tssr67658 7 88430326 to 88430364 38 + TSS region transcription start site region 67658
Tssr67659 7 88430863 to 88430865 2 + TSS region transcription start site region 67659
Gm15661 7 88448675 to 88449230 555 - pseudogene predicted gene 15661
Rps13-ps2 7 88530446 to 88530898 452 - pseudogene ribosomal protein S13, pseudogene 2
Tssr73469 7 88530926 to 88530928 2 - TSS region transcription start site region 73469
Gm8183 7 88571870 to 88572849 979 - pseudogene predicted gene 8183
D7Dcr36 7 88738995 to 88739090 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 36
Gm6240 7 88781922 to 88782389 467 - pseudogene predicted gene 6240
Gm45144 7 88853043 to 88864892 11849 - lincRNA gene predicted gene 45144
D7Dcr37 7 89014244 to 89014346 102 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 37
D7Mit123.1 7 89038953 to 89039087 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 123.1
D7Mit123 7 89039030 to 89039170 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 123
Tmem135 7 89139714 to 89404222 264508 - protein coding gene transmembrane protein 135
Tssr73470 7 89188310 to 89188315 5 - TSS region transcription start site region 73470
Tssr73471 7 89189714 to 89189721 7 - TSS region transcription start site region 73471
Gm44704 7 89215108 to 89217097 1989 - unclassified gene predicted gene 44704
Gm24659 7 89291190 to 89291299 109 - miRNA gene predicted gene, 24659
Gm22171 7 89295755 to 89295864 109 - miRNA gene predicted gene, 22171
Tssr73472 7 89328724 to 89328727 3 - TSS region transcription start site region 73472
Cpgi19390 7 89338240 to 89339071 831 CpG island CpG island 19390
Gm44995 7 89338370 to 89346288 7918 + antisense lncRNA gene predicted gene 44995
Tssr2323 7 89338418 to 89338422 4 + TSS region transcription start site region 2323
Tssr73473 7 89338589 to 89338600 11 - TSS region transcription start site region 73473
Tssr73474 7 89338605 to 89338632 27 - TSS region transcription start site region 73474
Tssr73475 7 89338646 to 89338666 20 - TSS region transcription start site region 73475
Tssr73476 7 89338669 to 89338680 11 - TSS region transcription start site region 73476
Tssr73477 7 89338685 to 89338705 20 - TSS region transcription start site region 73477
Tssr73478 7 89338709 to 89338795 86 - TSS region transcription start site region 73478
Tssr73479 7 89338912 to 89338919 7 - TSS region transcription start site region 73479
Gm44996 7 89388344 to 89391323 2979 - unclassified gene predicted gene 44996
Tssr67660 7 89392050 to 89392091 41 + TSS region transcription start site region 67660
Cpgi19391 7 89403352 to 89405055 1703 CpG island CpG island 19391
Tssr73480 7 89404144 to 89404149 5 - TSS region transcription start site region 73480
Tssr73481 7 89404191 to 89404204 13 - TSS region transcription start site region 73481
Tssr73482 7 89404210 to 89404237 27 - TSS region transcription start site region 73482
Tssr67661 7 89404356 to 89404367 11 + TSS region transcription start site region 67661
Fzd4 7 89404366 to 89410110 5744 + protein coding gene frizzled class receptor 4
Tssr67662 7 89404370 to 89404401 31 + TSS region transcription start site region 67662
Tssr67663 7 89406956 to 89406961 5 + TSS region transcription start site region 67663
Tssr67664 7 89426270 to 89426277 7 + TSS region transcription start site region 67664
Tssr67665 7 89426280 to 89426293 13 + TSS region transcription start site region 67665
Tssr67666 7 89426300 to 89426323 23 + TSS region transcription start site region 67666
AI314278 7 89426306 to 89432077 5771 + lincRNA gene expressed sequence AI314278
Tssr67667 7 89426330 to 89426353 23 + TSS region transcription start site region 67667
Tssr67668 7 89426923 to 89426926 3 + TSS region transcription start site region 67668
D7Mit320 7 89436896 to 89436978 82 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 320
Prss23 7 89507783 to 89527187 19404 - protein coding gene protease, serine 23
Tssr67669 7 89510017 to 89510028 11 + TSS region transcription start site region 67669
Tssr73483 7 89510033 to 89510043 10 - TSS region transcription start site region 73483
Tssr67670 7 89510066 to 89510071 5 + TSS region transcription start site region 67670
Tssr73484 7 89510551 to 89510564 13 - TSS region transcription start site region 73484
Prss23os 7 89510877 to 89511868 991 + antisense lncRNA gene protease, serine 23, opposite strand
Cpgi19392 7 89516964 to 89518239 1275 CpG island CpG island 19392
Tssr73485 7 89517534 to 89517565 31 - TSS region transcription start site region 73485
Tssr73486 7 89517576 to 89517587 11 - TSS region transcription start site region 73486
Tssr73487 7 89517871 to 89517885 14 - TSS region transcription start site region 73487
Tssr73488 7 89518099 to 89518108 9 - TSS region transcription start site region 73488
Tssr73489 7 89518128 to 89518149 21 - TSS region transcription start site region 73489
Tssr73490 7 89518153 to 89518209 56 - TSS region transcription start site region 73490
Tssr73491 7 89518221 to 89518232 11 - TSS region transcription start site region 73491
Tssr73492 7 89518283 to 89518305 22 - TSS region transcription start site region 73492
Tssr73493 7 89518534 to 89518555 21 - TSS region transcription start site region 73493
Tssr73494 7 89527064 to 89527082 18 - TSS region transcription start site region 73494
Tssr73495 7 89527086 to 89527120 34 - TSS region transcription start site region 73495
Tssr73496 7 89527162 to 89527173 11 - TSS region transcription start site region 73496
Tssr73497 7 89527535 to 89527548 13 - TSS region transcription start site region 73497
Tssr2324 7 89538513 to 89538514 1 + TSS region transcription start site region 2324
Gm45064 7 89552366 to 89568079 15713 + lincRNA gene predicted gene 45064
Tssr67671 7 89560011 to 89560017 6 + TSS region transcription start site region 67671
Gm2546 7 89607706 to 89608696 990 + pseudogene predicted gene 2546
Obq29 7 89614164 to 89614164 0 QTL obesity QTL 29
A230065N10Rik 7 89632097 to 89633124 1027 - antisense lncRNA gene RIKEN cDNA A230065N10 gene
Me3 7 89632392 to 89854359 221967 + protein coding gene malic enzyme 3, NADP(+)-dependent, mitochondrial
Tssr67672 7 89632405 to 89632414 9 + TSS region transcription start site region 67672
Tssr67673 7 89632417 to 89632450 33 + TSS region transcription start site region 67673
Tssr67674 7 89632483 to 89632492 9 + TSS region transcription start site region 67674
Tssr67675 7 89632499 to 89632542 43 + TSS region transcription start site region 67675
Tssr67676 7 89632556 to 89632567 11 + TSS region transcription start site region 67676
Cpgi19393 7 89632611 to 89633287 676 CpG island CpG island 19393
Tssr67677 7 89632689 to 89632731 42 + TSS region transcription start site region 67677
Tssr67678 7 89632875 to 89632912 37 + TSS region transcription start site region 67678
Tssr67679 7 89632951 to 89632993 42 + TSS region transcription start site region 67679
Tssr67680 7 89633005 to 89633022 17 + TSS region transcription start site region 67680
Tssr67681 7 89671032 to 89671037 5 + TSS region transcription start site region 67681
Tssr67682 7 89721401 to 89721405 4 + TSS region transcription start site region 67682
Tssr67683 7 89736677 to 89736685 8 + TSS region transcription start site region 67683
Gm15744 7 89761463 to 89761675 212 - pseudogene predicted gene 15744
Gm45793 7 89827218 to 89828559 1341 + unclassified gene predicted gene 45793
Ccdc81 7 89866148 to 89903629 37481 - protein coding gene coiled-coil domain containing 81
Tssr73498 7 89903578 to 89903633 55 - TSS region transcription start site region 73498
Hikeshi 7 89917529 to 89941204 23675 - protein coding gene heat shock protein nuclear import factor
Cpgi19394 7 89940648 to 89941348 700 CpG island CpG island 19394
Tssr73499 7 89941042 to 89941053 11 - TSS region transcription start site region 73499
Tssr73500 7 89941067 to 89941070 3 - TSS region transcription start site region 73500
Tssr73501 7 89941136 to 89941174 38 - TSS region transcription start site region 73501
Tssr73502 7 89941196 to 89941213 17 - TSS region transcription start site region 73502
Tssr73503 7 89941220 to 89941223 3 - TSS region transcription start site region 73503
Eed 7 89954654 to 89980983 26329 - protein coding gene embryonic ectoderm development
Gm45120 7 89964987 to 89965394 407 - unclassified gene predicted gene 45120
Cpgi19395 7 89979806 to 89981411 1605 CpG island CpG island 19395
Tssr73504 7 89980246 to 89980259 13 - TSS region transcription start site region 73504
Tssr73505 7 89980481 to 89980496 15 - TSS region transcription start site region 73505
Tssr73506 7 89980504 to 89980586 82 - TSS region transcription start site region 73506
Tssr73507 7 89980601 to 89980625 24 - TSS region transcription start site region 73507
Tssr67684 7 89980720 to 89980759 39 + TSS region transcription start site region 67684
Tssr73508 7 89980883 to 89980908 25 - TSS region transcription start site region 73508
Tssr73509 7 89980935 to 89981009 74 - TSS region transcription start site region 73509
Tssr67685 7 89981247 to 89981266 19 + TSS region transcription start site region 67685
Tssr67686 7 90007736 to 90007745 9 + TSS region transcription start site region 67686
Tssr73510 7 90019638 to 90019657 19 - TSS region transcription start site region 73510
Tssr73511 7 90023059 to 90023080 21 - TSS region transcription start site region 73511
Tssr67687 7 90023410 to 90023413 3 + TSS region transcription start site region 67687
Tssr73512 7 90024620 to 90024624 4 - TSS region transcription start site region 73512
Tssr67688 7 90025219 to 90025228 9 + TSS region transcription start site region 67688
Tssr2325 7 90029134 to 90029150 16 + TSS region transcription start site region 2325
Tssr67689 7 90029153 to 90029184 31 + TSS region transcription start site region 67689
E230029C05Rik 7 90029159 to 90049071 19912 + lncRNA gene RIKEN cDNA E230029C05 gene
Tssr67690 7 90030029 to 90030072 43 + TSS region transcription start site region 67690
Gm44860 7 90030571 to 90032916 2345 + unclassified gene predicted gene 44860
Gm44861 7 90042697 to 90043916 1219 + unclassified gene predicted gene 44861
Gm45993 7 90043432 to 90047523 4091 - lncRNA gene predicted gene, 45993
Tssr73513 7 90046363 to 90046401 38 - TSS region transcription start site region 73513
Tssr73514 7 90046977 to 90047012 35 - TSS region transcription start site region 73514
Tssr73515 7 90047033 to 90047042 9 - TSS region transcription start site region 73515
Gm32164 7 90055375 to 90063506 8131 - lncRNA gene predicted gene, 32164
Tssr2326 7 90059955 to 90059963 8 - TSS region transcription start site region 2326
Tssr67691 7 90060141 to 90060183 42 + TSS region transcription start site region 67691
Tssr73516 7 90067984 to 90067999 15 - TSS region transcription start site region 73516
Tssr73517 7 90068024 to 90068027 3 - TSS region transcription start site region 73517
Tssr73518 7 90068060 to 90068064 4 - TSS region transcription start site region 73518
Tssr2327 7 90071660 to 90071692 32 + TSS region transcription start site region 2327
Gm5341 7 90107480 to 90107968 488 - pseudogene predicted pseudogene 5341
Tssr73519 7 90108077 to 90108088 11 - TSS region transcription start site region 73519
2310010J17Rik 7 90124836 to 90129936 5100 - bidirectional promoter lncRNA gene RIKEN cDNA 2310010J17 gene
Tssr73520 7 90129339 to 90129356 17 - TSS region transcription start site region 73520
Tssr67692 7 90129498 to 90129527 29 + TSS region transcription start site region 67692
Tssr73521 7 90129648 to 90129651 3 - TSS region transcription start site region 73521
Cpgi19396 7 90129708 to 90131103 1395 CpG island CpG island 19396
Tssr67693 7 90129708 to 90129715 7 + TSS region transcription start site region 67693
Tssr73522 7 90129847 to 90129852 5 - TSS region transcription start site region 73522
Tssr73523 7 90129893 to 90129913 20 - TSS region transcription start site region 73523
Tssr73524 7 90129926 to 90129961 35 - TSS region transcription start site region 73524
Tssr73525 7 90129994 to 90130045 51 - TSS region transcription start site region 73525
Tssr67694 7 90130061 to 90130084 23 + TSS region transcription start site region 67694
Tssr73526 7 90130086 to 90130108 22 - TSS region transcription start site region 73526
Tssr67695 7 90130110 to 90130121 11 + TSS region transcription start site region 67695
Tssr73527 7 90130127 to 90130175 48 - TSS region transcription start site region 73527
Picalm 7 90130220 to 90209447 79227 + protein coding gene phosphatidylinositol binding clathrin assembly protein
Tssr67696 7 90130227 to 90130279 52 + TSS region transcription start site region 67696
Tssr67697 7 90130285 to 90130300 15 + TSS region transcription start site region 67697