Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:87227185-89367197

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle3 7 3463212 to 87493512 84030300 QTL systemic lupus erythmatosus susceptibility 3
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Gm6230 7 87242106 to 87242885 779 - pseudogene predicted gene 6230
Nox4 7 87246405 to 87398710 152305 + protein coding gene NADPH oxidase 4
Cpgi19385 7 87246457 to 87246988 531 CpG island CpG island 19385
Tssr67600 7 87246656 to 87246661 5 + TSS region transcription start site region 67600
Tssr67601 7 87246687 to 87246692 5 + TSS region transcription start site region 67601
Tssr67602 7 87246708 to 87246719 11 + TSS region transcription start site region 67602
Tssr67603 7 87246788 to 87246807 19 + TSS region transcription start site region 67603
Tssr67604 7 87246819 to 87246832 13 + TSS region transcription start site region 67604
Tssr67605 7 87253358 to 87253376 18 + TSS region transcription start site region 67605
Tssr67606 7 87278888 to 87278892 4 + TSS region transcription start site region 67606
Tssr67607 7 87281482 to 87281487 5 + TSS region transcription start site region 67607
Tssr67608 7 87304249 to 87304263 14 + TSS region transcription start site region 67608
Tssr67609 7 87304269 to 87304287 18 + TSS region transcription start site region 67609
Tssr67610 7 87304288 to 87304305 17 + TSS region transcription start site region 67610
Alcp11 7 87424771 to 87493512 68741 QTL alcohol preference locus 11, male specific
Tyr 7 87424771 to 87493512 68741 - protein coding gene tyrosinase
Tlag1 7 87424771 to 87493512 68741 QTL T lymphoma attenuation gene 1
Alcp13 7 87424771 to 87493512 68741 QTL alcohol preference locus 13, female specific
Lorp1 7 87424771 to 87493512 68741 QTL loss of righting due to propofol 1
D0Nds35 7 87428752 to 87428902 150 DNA segment DNA segment, Nuffield Department of Surgery 35
D0Nds37 7 87429084 to 87429168 84 DNA segment DNA segment, Nuffield Department of Surgery 37
D7Mit216 7 87447195 to 87447372 177 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 216
Tssr73462 7 87493327 to 87493340 13 - TSS region transcription start site region 73462
Tssr73463 7 87493371 to 87493438 67 - TSS region transcription start site region 73463
D7Mit31 7 87493929 to 87494171 242 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 31
chtl 7 87493929 to 97902584 10408655 heritable phenotypic marker chocolate-like
Bpq7 7 87493929 to 87494171 242 QTL blood pressure QTL 7
Tssr67611 7 87583948 to 87583957 9 + TSS region transcription start site region 67611
Tssr67612 7 87584117 to 87584130 13 + TSS region transcription start site region 67612
Tssr67613 7 87584140 to 87584173 33 + TSS region transcription start site region 67613
Grm5 7 87584168 to 88134907 550739 + protein coding gene glutamate receptor, metabotropic 5
Cpgi19386 7 87584179 to 87584627 448 CpG island CpG island 19386
Tssr67614 7 87584322 to 87584327 5 + TSS region transcription start site region 67614
Tssr67615 7 87584347 to 87584451 104 + TSS region transcription start site region 67615
Tssr67616 7 87586472 to 87586490 18 + TSS region transcription start site region 67616
Tssr67617 7 87586495 to 87586565 70 + TSS region transcription start site region 67617
Tssr2322 7 87650179 to 87650180 1 + TSS region transcription start site region 2322
Gm18454 7 87697822 to 87699107 1285 - pseudogene predicted gene, 18454
Gm44926 7 87772567 to 87774392 1825 + unclassified gene predicted gene 44926
Tssr67618 7 87828482 to 87828485 3 + TSS region transcription start site region 67618
Tssr67619 7 87844030 to 87844039 9 + TSS region transcription start site region 67619
Tssr67620 7 87861719 to 87861737 18 + TSS region transcription start site region 67620
Slpapn1 7 87884432 to 87884432 0 QTL average percent sleep per night
Gm44927 7 87890749 to 87891464 715 + unclassified gene predicted gene 44927
Albc2 7 88000000 to 96000000 8000000 QTL albino coat color QTL 2
Gm44848 7 88063061 to 88066294 3233 + unclassified gene predicted gene 44848
Gm44847 7 88082813 to 88084803 1990 + unclassified gene predicted gene 44847
Gm24249 7 88087188 to 88087251 63 - snRNA gene predicted gene, 24249
Gm44846 7 88119158 to 88122400 3242 + unclassified gene predicted gene 44846
Cpgi19387 7 88130035 to 88130903 868 CpG island CpG island 19387
Tssr67621 7 88219538 to 88219547 9 + TSS region transcription start site region 67621
Tssr67622 7 88221929 to 88221934 5 + TSS region transcription start site region 67622
Cpgi19388 7 88277945 to 88278400 455 CpG island CpG island 19388
Ctsc 7 88278085 to 88310888 32803 + protein coding gene cathepsin C
Tssr67623 7 88278126 to 88278141 15 + TSS region transcription start site region 67623
Tssr67624 7 88278780 to 88278788 8 + TSS region transcription start site region 67624
Gm26522 7 88278787 to 88283529 4742 - lincRNA gene predicted gene, 26522
Tssr67625 7 88280494 to 88280538 44 + TSS region transcription start site region 67625
Tssr67626 7 88280582 to 88280592 10 + TSS region transcription start site region 67626
Tssr67627 7 88280608 to 88280621 13 + TSS region transcription start site region 67627
Tssr67628 7 88280969 to 88280974 5 + TSS region transcription start site region 67628
Tssr67629 7 88281379 to 88281505 126 + TSS region transcription start site region 67629
Tssr67630 7 88283898 to 88283916 18 + TSS region transcription start site region 67630
Tssr67631 7 88288750 to 88288761 11 + TSS region transcription start site region 67631
Tssr67632 7 88288943 to 88288955 12 + TSS region transcription start site region 67632
Tssr67633 7 88288971 to 88288984 13 + TSS region transcription start site region 67633
Tssr67634 7 88290451 to 88290461 10 + TSS region transcription start site region 67634
Tssr67635 7 88290597 to 88290607 10 + TSS region transcription start site region 67635
Tssr67636 7 88290825 to 88290838 13 + TSS region transcription start site region 67636
Tssr67637 7 88290873 to 88290888 15 + TSS region transcription start site region 67637
Tssr67638 7 88290897 to 88290913 16 + TSS region transcription start site region 67638
Tssr67639 7 88290955 to 88290964 9 + TSS region transcription start site region 67639
Tssr67640 7 88290999 to 88291012 13 + TSS region transcription start site region 67640
Tssr67641 7 88297091 to 88297102 11 + TSS region transcription start site region 67641
Tssr67642 7 88297133 to 88297176 43 + TSS region transcription start site region 67642
Tssr67643 7 88297185 to 88297197 12 + TSS region transcription start site region 67643
Tssr67644 7 88297204 to 88297217 13 + TSS region transcription start site region 67644
Tssr67645 7 88297245 to 88297257 12 + TSS region transcription start site region 67645
Tssr73464 7 88299467 to 88299485 18 - TSS region transcription start site region 73464
Tssr67646 7 88299483 to 88299495 12 + TSS region transcription start site region 67646
Tssr73465 7 88299492 to 88299506 14 - TSS region transcription start site region 73465
Tssr73466 7 88299532 to 88299559 27 - TSS region transcription start site region 73466
Tssr67647 7 88302181 to 88302203 22 + TSS region transcription start site region 67647
Tssr73467 7 88302214 to 88302233 19 - TSS region transcription start site region 73467
Tssr67648 7 88302263 to 88302275 12 + TSS region transcription start site region 67648
Tssr67649 7 88308049 to 88308058 9 + TSS region transcription start site region 67649
Tssr73468 7 88308078 to 88308102 24 - TSS region transcription start site region 73468
Tssr67650 7 88308109 to 88308127 18 + TSS region transcription start site region 67650
Tssr67651 7 88309458 to 88309477 19 + TSS region transcription start site region 67651
Tssr67652 7 88309685 to 88309692 7 + TSS region transcription start site region 67652
Tssr67653 7 88309806 to 88309823 17 + TSS region transcription start site region 67653
Tssr67654 7 88309922 to 88309943 21 + TSS region transcription start site region 67654
Tssr67655 7 88309973 to 88309981 8 + TSS region transcription start site region 67655
Gm44751 7 88311478 to 88315864 4386 + lincRNA gene predicted gene 44751
Gm25345 7 88343969 to 88344101 132 + snoRNA gene predicted gene, 25345
C330001P17Rik 7 88348144 to 88349055 911 unclassified gene RIKEN cDNA C330001P17 gene
Gm2407 7 88349311 to 88356590 7279 - pseudogene predicted gene 2407
Cpgi19389 7 88430243 to 88430739 496 CpG island CpG island 19389
Tssr67656 7 88430257 to 88430286 29 + TSS region transcription start site region 67656
Rab38 7 88430273 to 88491572 61299 + protein coding gene RAB38, member RAS oncogene family
Tssr67657 7 88430299 to 88430320 21 + TSS region transcription start site region 67657
Tssr67658 7 88430326 to 88430364 38 + TSS region transcription start site region 67658
Tssr67659 7 88430863 to 88430865 2 + TSS region transcription start site region 67659
Gm15661 7 88448675 to 88449230 555 - pseudogene predicted gene 15661
Rps13-ps2 7 88530446 to 88530898 452 - pseudogene ribosomal protein S13, pseudogene 2
Tssr73469 7 88530926 to 88530928 2 - TSS region transcription start site region 73469
Gm8183 7 88571870 to 88572849 979 - pseudogene predicted gene 8183
D7Dcr36 7 88738995 to 88739090 95 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 36
Gm6240 7 88781922 to 88782389 467 - pseudogene predicted gene 6240
Gm45144 7 88853043 to 88864892 11849 - lincRNA gene predicted gene 45144
D7Dcr37 7 89014244 to 89014346 102 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 37
D7Mit123.1 7 89038953 to 89039087 134 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 123.1
D7Mit123 7 89039030 to 89039170 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 123
Tmem135 7 89139714 to 89404222 264508 - protein coding gene transmembrane protein 135
Tssr73470 7 89188310 to 89188315 5 - TSS region transcription start site region 73470
Tssr73471 7 89189714 to 89189721 7 - TSS region transcription start site region 73471
Gm44704 7 89215108 to 89217097 1989 - unclassified gene predicted gene 44704
Gm24659 7 89291190 to 89291299 109 - miRNA gene predicted gene, 24659
Gm22171 7 89295755 to 89295864 109 - miRNA gene predicted gene, 22171
Tssr73472 7 89328724 to 89328727 3 - TSS region transcription start site region 73472
Cpgi19390 7 89338240 to 89339071 831 CpG island CpG island 19390
Gm44995 7 89338370 to 89346288 7918 + antisense lncRNA gene predicted gene 44995
Tssr2323 7 89338418 to 89338422 4 + TSS region transcription start site region 2323
Tssr73473 7 89338589 to 89338600 11 - TSS region transcription start site region 73473
Tssr73474 7 89338605 to 89338632 27 - TSS region transcription start site region 73474
Tssr73475 7 89338646 to 89338666 20 - TSS region transcription start site region 73475
Tssr73476 7 89338669 to 89338680 11 - TSS region transcription start site region 73476
Tssr73477 7 89338685 to 89338705 20 - TSS region transcription start site region 73477
Tssr73478 7 89338709 to 89338795 86 - TSS region transcription start site region 73478
Tssr73479 7 89338912 to 89338919 7 - TSS region transcription start site region 73479
Capsq3 7 119886157 to 87493929 -32392228 QTL capsaicin sensitivity related QTL 3