Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:83659539-86009879

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il16 7 83642825 to 83745726 102901 - protein coding gene interleukin 16
2310044K18Rik 7 83659575 to 83660963 1388 + antisense lncRNA gene RIKEN cDNA 2310044K18 gene
Tssr67575 7 83660679 to 83660694 15 + TSS region transcription start site region 67575
Tssr73386 7 83661078 to 83661090 12 - TSS region transcription start site region 73386
Tssr73387 7 83697457 to 83697463 6 - TSS region transcription start site region 73387
Tssr73388 7 83697563 to 83697568 5 - TSS region transcription start site region 73388
Tssr73389 7 83706768 to 83706773 5 - TSS region transcription start site region 73389
Phgdh-ps1 7 83710966 to 83711719 753 - pseudogene 3-phosphoglycerate dehydrogenase, pseudogene 1
Cpgi19374 7 83722314 to 83722598 284 CpG island CpG island 19374
Tssr73390 7 83732346 to 83732357 11 - TSS region transcription start site region 73390
Tssr73391 7 83732401 to 83732437 36 - TSS region transcription start site region 73391
D7Mit261 7 83734030 to 83734134 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 261
Tssr73392 7 83735426 to 83735436 10 - TSS region transcription start site region 73392
Tssr73393 7 83735440 to 83735463 23 - TSS region transcription start site region 73393
Tssr73394 7 83735472 to 83735489 17 - TSS region transcription start site region 73394
Tssr73395 7 83735503 to 83735517 14 - TSS region transcription start site region 73395
Tssr73396 7 83735534 to 83735543 9 - TSS region transcription start site region 73396
Tssr73397 7 83744833 to 83744853 20 - TSS region transcription start site region 73397
Tssr73398 7 83745796 to 83745844 48 - TSS region transcription start site region 73398
Tssr73399 7 83746061 to 83746106 45 - TSS region transcription start site region 73399
Tssr67576 7 83755841 to 83755872 31 + TSS region transcription start site region 67576
Gm7964 7 83755904 to 83757281 1377 + pseudogene predicted gene 7964
Tssr67577 7 83755912 to 83755956 44 + TSS region transcription start site region 67577
Tssr67578 7 83756082 to 83756095 13 + TSS region transcription start site region 67578
Tssr67579 7 83756510 to 83756531 21 + TSS region transcription start site region 67579
Cfap161 7 83774101 to 83794880 20779 - protein coding gene cilia and flagella associated protein 161
Cpgi19375 7 83794725 to 83794898 173 CpG island CpG island 19375
Tssr73400 7 83794820 to 83794841 21 - TSS region transcription start site region 73400
Tssr73401 7 83794842 to 83794887 45 - TSS region transcription start site region 73401
Tssr67580 7 83799456 to 83799458 2 + TSS region transcription start site region 67580
Gm44993 7 83800422 to 83834599 34177 - lincRNA gene predicted gene 44993
Gm39043 7 83814707 to 83838345 23638 + lincRNA gene predicted gene, 39043
3110009M11Rik 7 83864590 to 83865481 891 - pseudogene RIKEN cDNA 3110009M11 gene
Gm44531 7 83866777 to 83868776 1999 + unclassified gene predicted gene 44531
Gm44530 7 83874362 to 83877920 3558 + unclassified gene predicted gene 44530
Tlnrd1 7 83880495 to 83884341 3846 - protein coding gene talin rod domain containing 1
Cpgi19376 7 83882210 to 83884821 2611 CpG island CpG island 19376
Tssr2320 7 83882218 to 83882220 2 + TSS region transcription start site region 2320
Tssr73402 7 83883454 to 83883470 16 - TSS region transcription start site region 73402
Tssr73403 7 83883517 to 83883570 53 - TSS region transcription start site region 73403
Tssr67581 7 83883622 to 83883645 23 + TSS region transcription start site region 67581
Tssr67582 7 83883647 to 83883668 21 + TSS region transcription start site region 67582
Tssr67583 7 83883724 to 83883740 16 + TSS region transcription start site region 67583
Tssr73404 7 83883798 to 83883830 32 - TSS region transcription start site region 73404
Tssr67584 7 83883857 to 83883881 24 + TSS region transcription start site region 67584
2310034P14Rik 7 83883953 to 83885194 1241 + protein coding gene RIKEN cDNA 2310034P14 gene
Tssr73405 7 83884154 to 83884170 16 - TSS region transcription start site region 73405
Tssr73406 7 83884213 to 83884253 40 - TSS region transcription start site region 73406
Tssr73407 7 83884262 to 83884286 24 - TSS region transcription start site region 73407
Tssr73408 7 83884289 to 83884315 26 - TSS region transcription start site region 73408
Tssr73409 7 83884324 to 83884336 12 - TSS region transcription start site region 73409
Cpgi19377 7 83891765 to 83892733 968 CpG island CpG island 19377
Tssr67585 7 83891983 to 83892033 50 + TSS region transcription start site region 67585
Mesd 7 83892000 to 83901532 9532 + protein coding gene mesoderm development LRP chaperone
Tssr67586 7 83892037 to 83892056 19 + TSS region transcription start site region 67586
Tssr67587 7 83892131 to 83892157 26 + TSS region transcription start site region 67587
Tssr67588 7 83892241 to 83892290 49 + TSS region transcription start site region 67588
Gm49493 7 83892262 to 83896397 4135 + unclassified gene predicted gene, 49493
Cemip 7 83932857 to 84086502 153645 - protein coding gene cell migration inducing protein, hyaluronan binding
Tssr73410 7 83933488 to 83933500 12 - TSS region transcription start site region 73410
Tssr73411 7 83937771 to 83937815 44 - TSS region transcription start site region 73411
Tssr67589 7 83964510 to 83964517 7 + TSS region transcription start site region 67589
Gm30440 7 83970181 to 84024735 54554 + lncRNA gene predicted gene, 30440
Tssr67590 7 83970261 to 83970276 15 + TSS region transcription start site region 67590
Tssr67591 7 83970287 to 83970305 18 + TSS region transcription start site region 67591
Tssr73412 7 83972422 to 83972428 6 - TSS region transcription start site region 73412
Tssr73413 7 83995316 to 83995320 4 - TSS region transcription start site region 73413
Tssr73414 7 84048146 to 84048152 6 - TSS region transcription start site region 73414
Tssr73415 7 84054322 to 84054326 4 - TSS region transcription start site region 73415
Tssr73416 7 84077563 to 84077565 2 - TSS region transcription start site region 73416
Cpgi19378 7 84085109 to 84086863 1754 CpG island CpG island 19378
Tssr73417 7 84086494 to 84086509 15 - TSS region transcription start site region 73417
Abhd17c 7 84109356 to 84151893 42537 - protein coding gene abhydrolase domain containing 17C
Tssr73418 7 84109492 to 84109496 4 - TSS region transcription start site region 73418
Cpgi19379 7 84150796 to 84152340 1544 CpG island CpG island 19379
Tssr73419 7 84151773 to 84151787 14 - TSS region transcription start site region 73419
Tssr73420 7 84151868 to 84151938 70 - TSS region transcription start site region 73420
Tssr73421 7 84151988 to 84151999 11 - TSS region transcription start site region 73421
Tssr73422 7 84152017 to 84152022 5 - TSS region transcription start site region 73422
Tssr73423 7 84152036 to 84152049 13 - TSS region transcription start site region 73423
Tssr73424 7 84152066 to 84152118 52 - TSS region transcription start site region 73424
Tssr67592 7 84152139 to 84152182 43 + TSS region transcription start site region 67592
Gm26708 7 84152140 to 84195115 42975 + bidirectional promoter lncRNA gene predicted gene, 26708
Gm39044 7 84153954 to 84164914 10960 - lncRNA gene predicted gene, 39044
Gm22177 7 84170565 to 84170722 157 + snRNA gene predicted gene, 22177
Tssr67593 7 84196548 to 84196552 4 + TSS region transcription start site region 67593
Gm44826 7 84208183 to 84210514 2331 - unclassified gene predicted gene 44826
Gm44827 7 84226829 to 84232919 6090 - lincRNA gene predicted gene 44827
Tssr73425 7 84232874 to 84232893 19 - TSS region transcription start site region 73425
Tssr67594 7 84233001 to 84233014 13 + TSS region transcription start site region 67594
Arnt2 7 84246278 to 84410176 163898 - protein coding gene aryl hydrocarbon receptor nuclear translocator 2
Tssr73426 7 84275534 to 84275584 50 - TSS region transcription start site region 73426
Tssr67595 7 84312733 to 84312739 6 + TSS region transcription start site region 67595
Gm25790 7 84323309 to 84323415 106 - snRNA gene predicted gene, 25790
Tssr67596 7 84333313 to 84333319 6 + TSS region transcription start site region 67596
Gm30873 7 84338095 to 84347869 9774 + antisense lncRNA gene predicted gene, 30873
Tssr73427 7 84372412 to 84372446 34 - TSS region transcription start site region 73427
Tssr73428 7 84372447 to 84372463 16 - TSS region transcription start site region 73428
Tssr73429 7 84372656 to 84372684 28 - TSS region transcription start site region 73429
Cpgi19380 7 84409325 to 84410555 1230 CpG island CpG island 19380
Tssr73430 7 84409882 to 84409924 42 - TSS region transcription start site region 73430
Tssr73431 7 84409962 to 84410002 40 - TSS region transcription start site region 73431
Tssr2321 7 84410010 to 84410021 11 - TSS region transcription start site region 2321
Tssr73432 7 84410027 to 84410048 21 - TSS region transcription start site region 73432
Tssr73433 7 84410061 to 84410068 7 - TSS region transcription start site region 73433
Tssr73434 7 84410121 to 84410142 21 - TSS region transcription start site region 73434
Gm39045 7 84411348 to 84417371 6023 - lncRNA gene predicted gene, 39045
Gm31284 7 84430281 to 84457068 26787 + lncRNA gene predicted gene, 31284
Gm44933 7 84435993 to 84439226 3233 - lincRNA gene predicted gene 44933
Tssr73435 7 84439186 to 84439195 9 - TSS region transcription start site region 73435
Tssr73436 7 84439201 to 84439210 9 - TSS region transcription start site region 73436
Gm45175 7 84442831 to 84444551 1720 - lincRNA gene predicted gene 45175
Tssr73437 7 84444531 to 84444539 8 - TSS region transcription start site region 73437
Gm17871 7 84481882 to 84482690 808 - pseudogene predicted gene, 17871
Cpgi19381 7 84528727 to 84529433 706 CpG island CpG island 19381
Gm2115 7 84528954 to 84578339 49385 + lncRNA gene predicted gene 2115
Tssr67597 7 84528964 to 84528981 17 + TSS region transcription start site region 67597
Gm45174 7 84554187 to 84557251 3064 + unclassified gene predicted gene 45174
Tssr67598 7 84568311 to 84568318 7 + TSS region transcription start site region 67598
Gm44928 7 84575715 to 84575842 127 - unclassified gene predicted gene 44928
Fah 7 84585159 to 84605942 20783 - protein coding gene fumarylacetoacetate hydrolase
Tssr73438 7 84594815 to 84594827 12 - TSS region transcription start site region 73438
Cpgi19382 7 84605389 to 84606296 907 CpG island CpG island 19382
Tssr73439 7 84605746 to 84605760 14 - TSS region transcription start site region 73439
Tssr73440 7 84605765 to 84605815 50 - TSS region transcription start site region 73440
Tssr73441 7 84605819 to 84605826 7 - TSS region transcription start site region 73441
Zfand6 7 84615045 to 84689879 74834 - protein coding gene zinc finger, AN1-type domain 6
Ses2 7 84640886 to 84641032 146 QTL salmonella enteritidis susceptibility 2
D7Mit62 7 84640886 to 84641032 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 62
Pgia3 7 84640886 to 84641032 146 QTL proteoglycan induced arthritis 3
Pgia21 7 84640886 to 84641032 146 QTL proteoglycan induced arthritis 21
Tssr73442 7 84669897 to 84669901 4 - TSS region transcription start site region 73442
Tssr73443 7 84679346 to 84679401 55 - TSS region transcription start site region 73443
Cpgi19383 7 84689306 to 84690509 1203 CpG island CpG island 19383
2610206C17Rik 7 84689640 to 84776549 86909 + antisense lncRNA gene RIKEN cDNA 2610206C17 gene
Tssr73444 7 84689794 to 84689821 27 - TSS region transcription start site region 73444
Tssr73445 7 84689823 to 84689834 11 - TSS region transcription start site region 73445
Tssr73446 7 84689845 to 84689899 54 - TSS region transcription start site region 73446
Tssr73447 7 84689904 to 84689918 14 - TSS region transcription start site region 73447
Tssr73448 7 84689934 to 84689939 5 - TSS region transcription start site region 73448
Tssr73449 7 84689948 to 84689964 16 - TSS region transcription start site region 73449
Tssr73450 7 84689980 to 84689991 11 - TSS region transcription start site region 73450
Tssr67599 7 84750057 to 84750066 9 + TSS region transcription start site region 67599
Cpgi19384 7 84779298 to 84779764 466 CpG island CpG island 19384
Gm18958 7 84801034 to 84803163 2129 + pseudogene predicted gene, 18958
Vmn2r-ps62 7 84810427 to 84810943 516 - pseudogene vomeronasal 2, receptor, pseudogene 62
Gm6155 7 84834539 to 84834879 340 - pseudogene predicted pseudogene 6155
Tssr73451 7 84835036 to 84835037 1 - TSS region transcription start site region 73451
Olfr291 7 84853571 to 84857318 3747 + protein coding gene olfactory receptor 291
Vmn2r-ps63 7 84878196 to 84878371 175 + pseudogene vomeronasal 2, receptor, pseudogene 63
Gm8018 7 84879555 to 84882525 2970 + pseudogene predicted gene 8018
D7Cwr11P 7 84902959 to 84903150 191 DNA segment DNA segment, Chr 7, Case Western Reserve-11P
Olfr290 7 84915781 to 84916728 947 + protein coding gene olfactory receptor 290
Gm18560 7 84919391 to 84920489 1098 - pseudogene predicted gene, 18560
Vmn2r65 7 84940169 to 84964009 23840 - protein coding gene vomeronasal 2, receptor 65
Gm17985 7 84948449 to 84949268 819 - pseudogene predicted gene, 17985
Vmn2r66 7 84994645 to 85012020 17375 - protein coding gene vomeronasal 2, receptor 66
Vmn2r-ps64 7 85034078 to 85034544 466 + pseudogene vomeronasal 2, receptor, pseudogene 64
Vmn2r-ps65 7 85041777 to 85041996 219 - pseudogene vomeronasal 2, receptor, pseudogene 65
Vmn2r-ps66 7 85053075 to 85070934 17859 + pseudogene vomeronasal 2, receptor, pseudogene 66
Vmn2r-ps67 7 85083980 to 85084364 384 - pseudogene vomeronasal 2, receptor, pseudogene 67
Gm18358 7 85090227 to 85091236 1009 + pseudogene predicted gene, 18358
Vmn2r67 7 85136240 to 85155902 19662 - protein coding gene vomeronasal 2, receptor 67
Vmn2r-ps68 7 85192197 to 85193057 860 + pseudogene vomeronasal 2, receptor, pseudogene 68
Vmn2r68 7 85221518 to 85237704 16186 - protein coding gene vomeronasal 2, receptor 68
Gm20414 7 85260689 to 85261334 645 - pseudogene predicted gene 20414
Gm20415 7 85288160 to 85289611 1451 - pseudogene predicted gene 20415
Vmn2r-ps69 7 85303953 to 85342888 38935 + pseudogene vomeronasal 2, receptor, pseudogene 69
Tssr73452 7 85379727 to 85379732 5 - TSS region transcription start site region 73452
Vmn2r69 7 85406376 to 85415676 9300 - protein coding gene vomeronasal 2, receptor 69
Gm18359 7 85477566 to 85478505 939 + pseudogene predicted gene, 18359
Gm44578 7 85501297 to 85505131 3834 + pseudogene predicted gene 44578
Vmn2r-ps70 7 85511926 to 85512150 224 - pseudogene vomeronasal 2, receptor, pseudogene 70
Gm18360 7 85516723 to 85519417 2694 + pseudogene predicted gene, 18360
Tssr73453 7 85541243 to 85541247 4 - TSS region transcription start site region 73453
Vmn2r70 7 85558703 to 85569088 10385 - protein coding gene vomeronasal 2, receptor 70
Vmn2r-ps71 7 85574667 to 85582344 7677 + pseudogene vomeronasal 2, receptor, pseudogene 71
Vmn2r-ps72 7 85589653 to 85590557 904 - pseudogene vomeronasal 2, receptor, pseudogene 72
Vmn2r71 7 85615462 to 85624547 9085 + protein coding gene vomeronasal 2, receptor 71
Vmn2r-ps73 7 85696406 to 85698579 2173 + pseudogene vomeronasal 2, receptor, pseudogene 73
Vmn2r-ps74 7 85712264 to 85713136 872 + pseudogene vomeronasal 2, receptor, pseudogene 74
Bomd1 7 85716387 to 85716494 107 QTL bone mineral density 1
D7Mit234a 7 85716387 to 85716494 107 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 234a
Vmn2r72 7 85737784 to 85754981 17197 - protein coding gene vomeronasal 2, receptor 72
Gm18779 7 85785019 to 85785595 576 - pseudogene predicted gene, 18779
Gm18354 7 85788171 to 85789023 852 - pseudogene predicted gene, 18354
Vmn2r-ps75 7 85798320 to 85798936 616 + pseudogene vomeronasal 2, receptor, pseudogene 75
Vmn2r-ps76 7 85815477 to 85816184 707 - pseudogene vomeronasal 2, receptor, pseudogene 76
Vmn2r-ps77 7 85821939 to 85822258 319 + pseudogene vomeronasal 2, receptor, pseudogene 77
Vmn2r73 7 85857547 to 85875938 18391 - protein coding gene vomeronasal 2, receptor 73
Vmn2r-ps78 7 85884457 to 85884764 307 + pseudogene vomeronasal 2, receptor, pseudogene 78
Vmn2r74 7 85951867 to 85961482 9615 - protein coding gene vomeronasal 2, receptor 74
Vmn2r-ps79 7 85967040 to 85967264 224 + pseudogene vomeronasal 2, receptor, pseudogene 79
Vmn2r-ps80 7 85997983 to 85999586 1603 - pseudogene vomeronasal 2, receptor, pseudogene 80
Cia7 7 112934612 to 85716387 -27218225 QTL collagen induced arthritis QTL 7