Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:82289362-85462920

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273 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbrs5 7 49509479 to 83586207 34076728 QTL tuberculosis resistance 5
Sh3gl3 7 82259908 to 82307420 47512 + protein coding gene SH3-domain GRB2-like 3
Cpgi19368 7 82334991 to 82336597 1606 CpG island CpG island 19368
Adamtsl3 7 82335694 to 82614450 278756 + protein coding gene ADAMTS-like 3
Tssr2316 7 82335734 to 82335759 25 + TSS region transcription start site region 2316
Gm44919 7 82342268 to 82343340 1072 + unclassified gene predicted gene 44919
Tssr73371 7 82359661 to 82359666 5 - TSS region transcription start site region 73371
Tssr67537 7 82535771 to 82535778 7 + TSS region transcription start site region 67537
Tssr73372 7 82541513 to 82541514 1 - TSS region transcription start site region 73372
Tssr67538 7 82612696 to 82612698 2 + TSS region transcription start site region 67538
Saxo2 7 82632960 to 82648528 15568 - protein coding gene stabilizer of axonemal microtubules 2
Cpgi19369 7 82648296 to 82648920 624 CpG island CpG island 19369
Tssr67539 7 82648352 to 82648356 4 + TSS region transcription start site region 67539
Tssr73373 7 82648469 to 82648545 76 - TSS region transcription start site region 73373
Tssr67540 7 82648595 to 82648653 58 + TSS region transcription start site region 67540
Efl1 7 82648614 to 82777852 129238 + protein coding gene elongation factor like GTPase 1
Tssr67541 7 82649380 to 82649391 11 + TSS region transcription start site region 67541
Gm44917 7 82677546 to 82678065 519 + pseudogene predicted gene 44917
Tssr67542 7 82679034 to 82679038 4 + TSS region transcription start site region 67542
Gm45807 7 82695399 to 82698272 2873 + unclassified gene predicted gene 45807
9130009I01Rik 7 82707577 to 82708815 1238 unclassified gene RIKEN cDNA 9130009I01 gene
Gm44916 7 82715592 to 82717785 2193 + unclassified gene predicted gene 44916
4933406J10Rik 7 82743368 to 82755644 12276 - antisense lncRNA gene RIKEN cDNA 4933406J10 gene
n-R5s154 7 82754872 to 82754979 107 - rRNA gene nuclear encoded rRNA 5S 154
Tssr67543 7 82755722 to 82755728 6 + TSS region transcription start site region 67543
Tssr67544 7 82755750 to 82755761 11 + TSS region transcription start site region 67544
Tssr67545 7 82771016 to 82771056 40 + TSS region transcription start site region 67545
Tssr67546 7 82771210 to 82771235 25 + TSS region transcription start site region 67546
Cpgi19370 7 82771225 to 82772044 819 CpG island CpG island 19370
Tssr67547 7 82771275 to 82771282 7 + TSS region transcription start site region 67547
Tssr67548 7 82771316 to 82771334 18 + TSS region transcription start site region 67548
Tssr67549 7 82771388 to 82771440 52 + TSS region transcription start site region 67549
Tssr67550 7 82771510 to 82771527 17 + TSS region transcription start site region 67550
Tssr67551 7 82771542 to 82771561 19 + TSS region transcription start site region 67551
Tssr67552 7 82771562 to 82771563 1 + TSS region transcription start site region 67552
Tssr67553 7 82771620 to 82771625 5 + TSS region transcription start site region 67553
Tssr67554 7 82771641 to 82771679 38 + TSS region transcription start site region 67554
Tssr73374 7 82771680 to 82771716 36 - TSS region transcription start site region 73374
Tssr67555 7 82771768 to 82771803 35 + TSS region transcription start site region 67555
Tssr67556 7 82771874 to 82771904 30 + TSS region transcription start site region 67556
Tssr67557 7 82771925 to 82771955 30 + TSS region transcription start site region 67557
Tssr67558 7 82771960 to 82772011 51 + TSS region transcription start site region 67558
D7Dcr35 7 82786385 to 82786485 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 35
Gm29796 7 82810903 to 82823444 12541 + lncRNA gene predicted gene, 29796
1700010L04Rik 7 82851599 to 82859849 8250 + lincRNA gene RIKEN cDNA 1700010L04 gene
Gm36584 7 82852498 to 82867074 14576 - lincRNA gene predicted gene, 36584
Cpgi19371 7 82865662 to 82868196 2534 CpG island CpG island 19371
Tssr67559 7 82866330 to 82866369 39 + TSS region transcription start site region 67559
Tssr73375 7 82867077 to 82867084 7 - TSS region transcription start site region 73375
Tssr67560 7 82867206 to 82867217 11 + TSS region transcription start site region 67560
Tssr67561 7 82867304 to 82867313 9 + TSS region transcription start site region 67561
Tssr67562 7 82867327 to 82867357 30 + TSS region transcription start site region 67562
Mex3b 7 82867333 to 82871515 4182 + protein coding gene mex3 RNA binding family member B
Tssr67563 7 82867451 to 82867499 48 + TSS region transcription start site region 67563
Tssr2317 7 82867784 to 82867794 10 + TSS region transcription start site region 2317
Cpgi19372 7 82868463 to 82870349 1886 CpG island CpG island 19372
4933430H16Rik 7 82937936 to 82940688 2752 - lincRNA gene RIKEN cDNA 4933430H16 gene
Gm45992 7 82945390 to 82951317 5927 + lncRNA gene predicted gene, 45992
Gm6112 7 82966589 to 82967217 628 - pseudogene predicted gene 6112
Tssr73376 7 82971385 to 82971396 11 - TSS region transcription start site region 73376
Tssr73377 7 82971420 to 82971423 3 - TSS region transcription start site region 73377
Gm22934 7 82994835 to 82994966 131 + snoRNA gene predicted gene, 22934
Gm36817 7 83037378 to 83048173 10795 + lncRNA gene predicted gene, 36817
Stmm1c 7 83139778 to 83139778 0 QTL skin tumor modifier of MSM 1c
Stmm1d 7 83139778 to 83139778 0 QTL skin tumor modifier of MSM 1d
Stmm1a 7 83139778 to 83139778 0 QTL skin tumor modifier of MSM 1a
Stmm1b 7 83139778 to 83139778 0 QTL skin tumor modifier of MSM 1b
Tssr67564 7 83148390 to 83148401 11 + TSS region transcription start site region 67564
A530021J07Rik 7 83148463 to 83179432 30969 + lincRNA gene Riken cDNA A530021J07 gene
5930435M05Rik 7 83178570 to 83201586 23016 - lincRNA gene RIKEN cDNA 5930435M05 gene
Gm44845 7 83234541 to 83234875 334 + pseudogene predicted gene 44845
Gm44724 7 83327738 to 83369429 41691 - lincRNA gene predicted gene 44724
Gm29976 7 83341271 to 83383189 41918 - lncRNA gene predicted gene, 29976
Gm44723 7 83379142 to 83383141 3999 - unclassified gene predicted gene 44723
Tssr67565 7 83408931 to 83408936 5 + TSS region transcription start site region 67565
Gm7957 7 83411977 to 83414578 2601 + pseudogene predicted gene 7957
Gm44991 7 83471708 to 83485474 13766 + lincRNA gene predicted gene 44991
Tssr73378 7 83531728 to 83531731 3 - TSS region transcription start site region 73378
Gm10610 7 83536810 to 83550703 13893 - lincRNA gene predicted gene 10610
Tssr2318 7 83567897 to 83567901 4 + TSS region transcription start site region 2318
Tssr67566 7 83584910 to 83584942 32 + TSS region transcription start site region 67566
Tmc3 7 83584927 to 83625614 40687 + protein coding gene transmembrane channel-like gene family 3
D7Mit350 7 83586089 to 83586207 118 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 350
Gm16638 7 83597048 to 83631880 34832 - antisense lncRNA gene predicted gene, 16638
Tssr73379 7 83631802 to 83631819 17 - TSS region transcription start site region 73379
Cpgi19373 7 83631805 to 83632269 464 CpG island CpG island 19373
Tssr73380 7 83631823 to 83631852 29 - TSS region transcription start site region 73380
Tssr67567 7 83631964 to 83631969 5 + TSS region transcription start site region 67567
Tssr67568 7 83631974 to 83631981 7 + TSS region transcription start site region 67568
Tssr67569 7 83631987 to 83632022 35 + TSS region transcription start site region 67569
Stard5 7 83632017 to 83642328 10311 + protein coding gene StAR-related lipid transfer (START) domain containing 5
Tssr73381 7 83632472 to 83632475 3 - TSS region transcription start site region 73381
Gm45838 7 83633371 to 83635817 2446 + unclassified gene predicted gene 45838
Tssr67570 7 83641377 to 83641388 11 + TSS region transcription start site region 67570
Tssr67571 7 83641750 to 83641768 18 + TSS region transcription start site region 67571
Tssr67572 7 83641819 to 83641834 15 + TSS region transcription start site region 67572
Tssr73382 7 83642254 to 83642258 4 - TSS region transcription start site region 73382
Il16 7 83642825 to 83745726 102901 - protein coding gene interleukin 16
Tssr73383 7 83653338 to 83653342 4 - TSS region transcription start site region 73383
Tssr67573 7 83653858 to 83653880 22 + TSS region transcription start site region 67573
Tssr73384 7 83655313 to 83655432 119 - TSS region transcription start site region 73384
Tssr73385 7 83655491 to 83655498 7 - TSS region transcription start site region 73385
Tssr67574 7 83658823 to 83658838 15 + TSS region transcription start site region 67574
Tssr2319 7 83659417 to 83659427 10 - TSS region transcription start site region 2319
2310044K18Rik 7 83659575 to 83660963 1388 + antisense lncRNA gene RIKEN cDNA 2310044K18 gene
Tssr67575 7 83660679 to 83660694 15 + TSS region transcription start site region 67575
Tssr73386 7 83661078 to 83661090 12 - TSS region transcription start site region 73386
Tssr73387 7 83697457 to 83697463 6 - TSS region transcription start site region 73387
Tssr73388 7 83697563 to 83697568 5 - TSS region transcription start site region 73388
Tssr73389 7 83706768 to 83706773 5 - TSS region transcription start site region 73389
Phgdh-ps1 7 83710966 to 83711719 753 - pseudogene 3-phosphoglycerate dehydrogenase, pseudogene 1
Cpgi19374 7 83722314 to 83722598 284 CpG island CpG island 19374
Tssr73390 7 83732346 to 83732357 11 - TSS region transcription start site region 73390
Tssr73391 7 83732401 to 83732437 36 - TSS region transcription start site region 73391
D7Mit261 7 83734030 to 83734134 104 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 261
Tssr73392 7 83735426 to 83735436 10 - TSS region transcription start site region 73392
Tssr73393 7 83735440 to 83735463 23 - TSS region transcription start site region 73393
Tssr73394 7 83735472 to 83735489 17 - TSS region transcription start site region 73394
Tssr73395 7 83735503 to 83735517 14 - TSS region transcription start site region 73395
Tssr73396 7 83735534 to 83735543 9 - TSS region transcription start site region 73396
Tssr73397 7 83744833 to 83744853 20 - TSS region transcription start site region 73397
Tssr73398 7 83745796 to 83745844 48 - TSS region transcription start site region 73398
Tssr73399 7 83746061 to 83746106 45 - TSS region transcription start site region 73399
Tssr67576 7 83755841 to 83755872 31 + TSS region transcription start site region 67576
Gm7964 7 83755904 to 83757281 1377 + pseudogene predicted gene 7964
Tssr67577 7 83755912 to 83755956 44 + TSS region transcription start site region 67577
Tssr67578 7 83756082 to 83756095 13 + TSS region transcription start site region 67578
Tssr67579 7 83756510 to 83756531 21 + TSS region transcription start site region 67579
Cfap161 7 83774101 to 83794880 20779 - protein coding gene cilia and flagella associated protein 161
Cpgi19375 7 83794725 to 83794898 173 CpG island CpG island 19375
Tssr73400 7 83794820 to 83794841 21 - TSS region transcription start site region 73400
Tssr73401 7 83794842 to 83794887 45 - TSS region transcription start site region 73401
Tssr67580 7 83799456 to 83799458 2 + TSS region transcription start site region 67580
Gm44993 7 83800422 to 83834599 34177 - lincRNA gene predicted gene 44993
Gm39043 7 83814707 to 83838345 23638 + lincRNA gene predicted gene, 39043
3110009M11Rik 7 83864590 to 83865481 891 - pseudogene RIKEN cDNA 3110009M11 gene
Gm44531 7 83866777 to 83868776 1999 + unclassified gene predicted gene 44531
Gm44530 7 83874362 to 83877920 3558 + unclassified gene predicted gene 44530
Tlnrd1 7 83880495 to 83884341 3846 - protein coding gene talin rod domain containing 1
Cpgi19376 7 83882210 to 83884821 2611 CpG island CpG island 19376
Tssr2320 7 83882218 to 83882220 2 + TSS region transcription start site region 2320
Tssr73402 7 83883454 to 83883470 16 - TSS region transcription start site region 73402
Tssr73403 7 83883517 to 83883570 53 - TSS region transcription start site region 73403
Tssr67581 7 83883622 to 83883645 23 + TSS region transcription start site region 67581
Tssr67582 7 83883647 to 83883668 21 + TSS region transcription start site region 67582
Tssr67583 7 83883724 to 83883740 16 + TSS region transcription start site region 67583
Tssr73404 7 83883798 to 83883830 32 - TSS region transcription start site region 73404
Tssr67584 7 83883857 to 83883881 24 + TSS region transcription start site region 67584
2310034P14Rik 7 83883953 to 83885194 1241 + protein coding gene RIKEN cDNA 2310034P14 gene
Tssr73405 7 83884154 to 83884170 16 - TSS region transcription start site region 73405
Tssr73406 7 83884213 to 83884253 40 - TSS region transcription start site region 73406
Tssr73407 7 83884262 to 83884286 24 - TSS region transcription start site region 73407
Tssr73408 7 83884289 to 83884315 26 - TSS region transcription start site region 73408
Tssr73409 7 83884324 to 83884336 12 - TSS region transcription start site region 73409
Cpgi19377 7 83891765 to 83892733 968 CpG island CpG island 19377
Tssr67585 7 83891983 to 83892033 50 + TSS region transcription start site region 67585
Mesd 7 83892000 to 83901532 9532 + protein coding gene mesoderm development LRP chaperone
Tssr67586 7 83892037 to 83892056 19 + TSS region transcription start site region 67586
Tssr67587 7 83892131 to 83892157 26 + TSS region transcription start site region 67587
Tssr67588 7 83892241 to 83892290 49 + TSS region transcription start site region 67588
Gm49493 7 83892262 to 83896397 4135 + unclassified gene predicted gene, 49493
Cemip 7 83932857 to 84086502 153645 - protein coding gene cell migration inducing protein, hyaluronan binding
Tssr73410 7 83933488 to 83933500 12 - TSS region transcription start site region 73410
Tssr73411 7 83937771 to 83937815 44 - TSS region transcription start site region 73411
Tssr67589 7 83964510 to 83964517 7 + TSS region transcription start site region 67589
Gm30440 7 83970181 to 84024735 54554 + lncRNA gene predicted gene, 30440
Tssr67590 7 83970261 to 83970276 15 + TSS region transcription start site region 67590
Tssr67591 7 83970287 to 83970305 18 + TSS region transcription start site region 67591
Tssr73412 7 83972422 to 83972428 6 - TSS region transcription start site region 73412
Tssr73413 7 83995316 to 83995320 4 - TSS region transcription start site region 73413
Tssr73414 7 84048146 to 84048152 6 - TSS region transcription start site region 73414
Tssr73415 7 84054322 to 84054326 4 - TSS region transcription start site region 73415
Tssr73416 7 84077563 to 84077565 2 - TSS region transcription start site region 73416
Cpgi19378 7 84085109 to 84086863 1754 CpG island CpG island 19378
Tssr73417 7 84086494 to 84086509 15 - TSS region transcription start site region 73417
Abhd17c 7 84109356 to 84151893 42537 - protein coding gene abhydrolase domain containing 17C
Tssr73418 7 84109492 to 84109496 4 - TSS region transcription start site region 73418
Cpgi19379 7 84150796 to 84152340 1544 CpG island CpG island 19379
Tssr73419 7 84151773 to 84151787 14 - TSS region transcription start site region 73419
Tssr73420 7 84151868 to 84151938 70 - TSS region transcription start site region 73420
Tssr73421 7 84151988 to 84151999 11 - TSS region transcription start site region 73421
Tssr73422 7 84152017 to 84152022 5 - TSS region transcription start site region 73422
Tssr73423 7 84152036 to 84152049 13 - TSS region transcription start site region 73423
Tssr73424 7 84152066 to 84152118 52 - TSS region transcription start site region 73424
Tssr67592 7 84152139 to 84152182 43 + TSS region transcription start site region 67592
Gm26708 7 84152140 to 84195115 42975 + bidirectional promoter lncRNA gene predicted gene, 26708
Gm39044 7 84153954 to 84164914 10960 - lncRNA gene predicted gene, 39044
Gm22177 7 84170565 to 84170722 157 + snRNA gene predicted gene, 22177
Tssr67593 7 84196548 to 84196552 4 + TSS region transcription start site region 67593
Gm44826 7 84208183 to 84210514 2331 - unclassified gene predicted gene 44826
Gm44827 7 84226829 to 84232919 6090 - lincRNA gene predicted gene 44827
Tssr73425 7 84232874 to 84232893 19 - TSS region transcription start site region 73425
Tssr67594 7 84233001 to 84233014 13 + TSS region transcription start site region 67594
Arnt2 7 84246278 to 84410176 163898 - protein coding gene aryl hydrocarbon receptor nuclear translocator 2
Tssr73426 7 84275534 to 84275584 50 - TSS region transcription start site region 73426
Tssr67595 7 84312733 to 84312739 6 + TSS region transcription start site region 67595
Gm25790 7 84323309 to 84323415 106 - snRNA gene predicted gene, 25790
Tssr67596 7 84333313 to 84333319 6 + TSS region transcription start site region 67596
Gm30873 7 84338095 to 84347869 9774 + antisense lncRNA gene predicted gene, 30873
Tssr73427 7 84372412 to 84372446 34 - TSS region transcription start site region 73427