Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:81689991-82981597

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Homer2 7 81600481 to 81706925 106444 - protein coding gene homer scaffolding protein 2
Cpgi19358 7 81706248 to 81707768 1520 CpG island CpG island 19358
Tssr73349 7 81706857 to 81706869 12 - TSS region transcription start site region 73349
Tssr73350 7 81706890 to 81706901 11 - TSS region transcription start site region 73350
Tssr73351 7 81706905 to 81706964 59 - TSS region transcription start site region 73351
Tssr73352 7 81707082 to 81707098 16 - TSS region transcription start site region 73352
Gm32579 7 81708152 to 81716866 8714 - lncRNA gene predicted gene, 32579
Gm42400 7 81731403 to 81737634 6231 + lncRNA gene predicted gene, 42400
Gm18806 7 81742356 to 81744259 1903 + pseudogene predicted gene, 18806
Cpgi19359 7 81762298 to 81763868 1570 CpG island CpG island 19359
Tssr67511 7 81762927 to 81762943 16 + TSS region transcription start site region 67511
Tssr67512 7 81762947 to 81762997 50 + TSS region transcription start site region 67512
Ramac 7 81762953 to 81769490 6537 + protein coding gene RNA guanine-7 methyltransferase activating subunit
Tssr67513 7 81765931 to 81765936 5 + TSS region transcription start site region 67513
3110040N11Rik 7 81782182 to 81789478 7296 - protein coding gene RIKEN cDNA 3110040N11 gene
Cpgi19360 7 81788982 to 81789745 763 CpG island CpG island 19360
Tssr73353 7 81789426 to 81789490 64 - TSS region transcription start site region 73353
Gm45016 7 81789477 to 81794685 5208 + antisense lncRNA gene predicted gene 45016
Gm45845 7 81789738 to 81790319 581 - unclassified gene predicted gene 45845
Btbd1 7 81792074 to 81829431 37357 - protein coding gene BTB (POZ) domain containing 1
Cpgi19361 7 81828609 to 81830150 1541 CpG island CpG island 19361
Tssr73354 7 81829443 to 81829514 71 - TSS region transcription start site region 73354
Gm32695 7 81831661 to 81849058 17397 + lncRNA gene predicted gene, 32695
Tssr67514 7 81835585 to 81835615 30 + TSS region transcription start site region 67514
Tssr67515 7 81843228 to 81843235 7 + TSS region transcription start site region 67515
Gm10160 7 81855533 to 81855794 261 - protein coding gene predicted gene 10160
Cpgi19362 7 81858713 to 81859841 1128 CpG island CpG island 19362
Tssr67516 7 81858965 to 81858977 12 + TSS region transcription start site region 67516
Tssr67517 7 81858993 to 81859010 17 + TSS region transcription start site region 67517
Tm6sf1 7 81859001 to 81884079 25078 + protein coding gene transmembrane 6 superfamily member 1
Tssr67518 7 81859040 to 81859053 13 + TSS region transcription start site region 67518
Tssr67519 7 81859063 to 81859125 62 + TSS region transcription start site region 67519
Tssr67520 7 81859147 to 81859152 5 + TSS region transcription start site region 67520
Tssr67521 7 81859288 to 81859297 9 + TSS region transcription start site region 67521
Tssr67522 7 81859328 to 81859337 9 + TSS region transcription start site region 67522
Tssr2315 7 81859389 to 81859400 11 + TSS region transcription start site region 2315
Tssr67523 7 81859407 to 81859433 26 + TSS region transcription start site region 67523
Gm45014 7 81860293 to 81862527 2234 - antisense lncRNA gene predicted gene 45014
Tssr73355 7 81862510 to 81862521 11 - TSS region transcription start site region 73355
Tssr73356 7 81862523 to 81862530 7 - TSS region transcription start site region 73356
Tssr67524 7 81862578 to 81862587 9 + TSS region transcription start site region 67524
Tssr67525 7 81862624 to 81862659 35 + TSS region transcription start site region 67525
Tssr67526 7 81862674 to 81862692 18 + TSS region transcription start site region 67526
Tssr73357 7 81863311 to 81863326 15 - TSS region transcription start site region 73357
Tssr67527 7 81873041 to 81873053 12 + TSS region transcription start site region 67527
Gm45867 7 81874204 to 81876520 2316 + unclassified gene predicted gene 45867
Hdgfl3 7 81881256 to 81934459 53203 - protein coding gene HDGF like 3
Tssr73358 7 81885335 to 81885351 16 - TSS region transcription start site region 73358
Tssr73359 7 81904023 to 81904026 3 - TSS region transcription start site region 73359
Gm45088 7 81918943 to 81920350 1407 - unclassified gene predicted gene 45088
Tssr67528 7 81932875 to 81932895 20 + TSS region transcription start site region 67528
Cpgi19363 7 81933311 to 81935109 1798 CpG island CpG island 19363
Tssr73360 7 81933814 to 81933872 58 - TSS region transcription start site region 73360
Gm46013 7 81934065 to 82015926 81861 + protein coding gene predicted gene, 46013
Tssr73361 7 81934166 to 81934177 11 - TSS region transcription start site region 73361
Tssr73362 7 81934277 to 81934288 11 - TSS region transcription start site region 73362
Tssr73363 7 81934292 to 81934311 19 - TSS region transcription start site region 73363
Tssr73364 7 81934316 to 81934463 147 - TSS region transcription start site region 73364
Tssr73365 7 81934570 to 81934592 22 - TSS region transcription start site region 73365
Tssr73366 7 81934631 to 81934650 19 - TSS region transcription start site region 73366
Gm25907 7 81965710 to 81965834 124 + snoRNA gene predicted gene, 25907
Bnc1 7 81966672 to 81992292 25620 - protein coding gene basonuclin 1
Cpgi19364 7 81991386 to 81992963 1577 CpG island CpG island 19364
4833418N17Rik 7 81992002 to 81992618 616 + pseudogene RIKEN cDNA 4833418N17 gene
Tssr73367 7 81992277 to 81992314 37 - TSS region transcription start site region 73367
Tssr73368 7 81992582 to 81992593 11 - TSS region transcription start site region 73368
Tssr73369 7 81992668 to 81992679 11 - TSS region transcription start site region 73369
D7Mit347 7 82010132 to 82010242 110 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 347
D7Mit319 7 82038932 to 82039044 112 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 319
Cpgi19365 7 82056992 to 82057156 164 CpG island CpG island 19365
Gm20744 7 82070387 to 82081758 11371 + lincRNA gene predicted gene, 20744
Gm45056 7 82115766 to 82120432 4666 - lincRNA gene predicted gene 45056
Gm32850 7 82120053 to 82161719 41666 + lincRNA gene predicted gene, 32850
Gm45090 7 82155877 to 82157024 1147 - lincRNA gene predicted gene 45090
Gm45089 7 82172665 to 82174704 2039 - unclassified gene predicted gene 45089
Tssr67529 7 82173798 to 82173808 10 + TSS region transcription start site region 67529
Cpgi19366 7 82174540 to 82175601 1061 CpG island CpG island 19366
Tssr73370 7 82174698 to 82174709 11 - TSS region transcription start site region 73370
Tssr67530 7 82174798 to 82174825 27 + TSS region transcription start site region 67530
Tssr67531 7 82174826 to 82174854 28 + TSS region transcription start site region 67531
Tssr67532 7 82174870 to 82174875 5 + TSS region transcription start site region 67532
Tssr67533 7 82175187 to 82175199 12 + TSS region transcription start site region 67533
Tssr67534 7 82175206 to 82175243 37 + TSS region transcription start site region 67534
Tssr67535 7 82209487 to 82209499 12 + TSS region transcription start site region 67535
Gm32903 7 82236196 to 82254657 18461 - lncRNA gene predicted gene, 32903
Sh3gl3 7 82259908 to 82307420 47512 + protein coding gene SH3-domain GRB2-like 3
Tssr67536 7 82264437 to 82264444 7 + TSS region transcription start site region 67536
Cpgi19367 7 82264918 to 82265128 210 CpG island CpG island 19367
Cpgi19368 7 82334991 to 82336597 1606 CpG island CpG island 19368
Adamtsl3 7 82335694 to 82614450 278756 + protein coding gene ADAMTS-like 3
Tssr2316 7 82335734 to 82335759 25 + TSS region transcription start site region 2316
Gm44919 7 82342268 to 82343340 1072 + unclassified gene predicted gene 44919
Tssr73371 7 82359661 to 82359666 5 - TSS region transcription start site region 73371
Tssr67537 7 82535771 to 82535778 7 + TSS region transcription start site region 67537
Tssr73372 7 82541513 to 82541514 1 - TSS region transcription start site region 73372
Tssr67538 7 82612696 to 82612698 2 + TSS region transcription start site region 67538
Saxo2 7 82632960 to 82648528 15568 - protein coding gene stabilizer of axonemal microtubules 2
Cpgi19369 7 82648296 to 82648920 624 CpG island CpG island 19369
Tssr67539 7 82648352 to 82648356 4 + TSS region transcription start site region 67539
Tssr73373 7 82648469 to 82648545 76 - TSS region transcription start site region 73373
Tssr67540 7 82648595 to 82648653 58 + TSS region transcription start site region 67540
Efl1 7 82648614 to 82777852 129238 + protein coding gene elongation factor like GTPase 1
Tssr67541 7 82649380 to 82649391 11 + TSS region transcription start site region 67541
Gm44917 7 82677546 to 82678065 519 + pseudogene predicted gene 44917
Tssr67542 7 82679034 to 82679038 4 + TSS region transcription start site region 67542
Gm45807 7 82695399 to 82698272 2873 + unclassified gene predicted gene 45807
9130009I01Rik 7 82707577 to 82708815 1238 unclassified gene RIKEN cDNA 9130009I01 gene
Gm44916 7 82715592 to 82717785 2193 + unclassified gene predicted gene 44916
4933406J10Rik 7 82743368 to 82755644 12276 - antisense lncRNA gene RIKEN cDNA 4933406J10 gene
n-R5s154 7 82754872 to 82754979 107 - rRNA gene nuclear encoded rRNA 5S 154
Tssr67543 7 82755722 to 82755728 6 + TSS region transcription start site region 67543
Tssr67544 7 82755750 to 82755761 11 + TSS region transcription start site region 67544
Tssr67545 7 82771016 to 82771056 40 + TSS region transcription start site region 67545
Tssr67546 7 82771210 to 82771235 25 + TSS region transcription start site region 67546
Cpgi19370 7 82771225 to 82772044 819 CpG island CpG island 19370
Tssr67547 7 82771275 to 82771282 7 + TSS region transcription start site region 67547
Tssr67548 7 82771316 to 82771334 18 + TSS region transcription start site region 67548
Tssr67549 7 82771388 to 82771440 52 + TSS region transcription start site region 67549
Tssr67550 7 82771510 to 82771527 17 + TSS region transcription start site region 67550
Tssr67551 7 82771542 to 82771561 19 + TSS region transcription start site region 67551
Tssr67552 7 82771562 to 82771563 1 + TSS region transcription start site region 67552
Tssr67553 7 82771620 to 82771625 5 + TSS region transcription start site region 67553
Tssr67554 7 82771641 to 82771679 38 + TSS region transcription start site region 67554
Tssr73374 7 82771680 to 82771716 36 - TSS region transcription start site region 73374
Tssr67555 7 82771768 to 82771803 35 + TSS region transcription start site region 67555
Tssr67556 7 82771874 to 82771904 30 + TSS region transcription start site region 67556
Tssr67557 7 82771925 to 82771955 30 + TSS region transcription start site region 67557
Tssr67558 7 82771960 to 82772011 51 + TSS region transcription start site region 67558
D7Dcr35 7 82786385 to 82786485 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 35
Gm29796 7 82810903 to 82823444 12541 + lncRNA gene predicted gene, 29796
1700010L04Rik 7 82851599 to 82859849 8250 + lincRNA gene RIKEN cDNA 1700010L04 gene
Gm36584 7 82852498 to 82867074 14576 - lincRNA gene predicted gene, 36584
Cpgi19371 7 82865662 to 82868196 2534 CpG island CpG island 19371
Tssr67559 7 82866330 to 82866369 39 + TSS region transcription start site region 67559
Tssr73375 7 82867077 to 82867084 7 - TSS region transcription start site region 73375
Tssr67560 7 82867206 to 82867217 11 + TSS region transcription start site region 67560
Tssr67561 7 82867304 to 82867313 9 + TSS region transcription start site region 67561
Tssr67562 7 82867327 to 82867357 30 + TSS region transcription start site region 67562
Mex3b 7 82867333 to 82871515 4182 + protein coding gene mex3 RNA binding family member B
Tssr67563 7 82867451 to 82867499 48 + TSS region transcription start site region 67563
Tssr2317 7 82867784 to 82867794 10 + TSS region transcription start site region 2317
Cpgi19372 7 82868463 to 82870349 1886 CpG island CpG island 19372
4933430H16Rik 7 82937936 to 82940688 2752 - lincRNA gene RIKEN cDNA 4933430H16 gene
Gm45992 7 82945390 to 82951317 5927 + lncRNA gene predicted gene, 45992
Gm6112 7 82966589 to 82967217 628 - pseudogene predicted gene 6112
Tssr73376 7 82971385 to 82971396 11 - TSS region transcription start site region 73376
Tssr73377 7 82971420 to 82971423 3 - TSS region transcription start site region 73377