Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:81538609-82120150

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fsd2 7 81534354 to 81566981 32627 - protein coding gene fibronectin type III and SPRY domain containing 2
Tssr73345 7 81566939 to 81566993 54 - TSS region transcription start site region 73345
Tssr73346 7 81567000 to 81567011 11 - TSS region transcription start site region 73346
Cpgi19357 7 81571069 to 81572307 1238 CpG island CpG island 19357
Tssr67509 7 81571246 to 81571318 72 + TSS region transcription start site region 67509
Whamm 7 81571266 to 81596836 25570 + protein coding gene WAS protein homolog associated with actin, golgi membranes and microtubules
Tssr73347 7 81572241 to 81572261 20 - TSS region transcription start site region 73347
Tssr67510 7 81588871 to 81588888 17 + TSS region transcription start site region 67510
Gm45698 7 81590894 to 81592028 1134 + unclassified gene predicted gene 45698
Homer2 7 81600481 to 81706925 106444 - protein coding gene homer scaffolding protein 2
Gm44570 7 81610126 to 81613479 3353 + antisense lncRNA gene predicted gene 44570
Gm26149 7 81669728 to 81669835 107 + snRNA gene predicted gene, 26149
Tssr73348 7 81688477 to 81688482 5 - TSS region transcription start site region 73348
Cpgi19358 7 81706248 to 81707768 1520 CpG island CpG island 19358
Tssr73349 7 81706857 to 81706869 12 - TSS region transcription start site region 73349
Tssr73350 7 81706890 to 81706901 11 - TSS region transcription start site region 73350
Tssr73351 7 81706905 to 81706964 59 - TSS region transcription start site region 73351
Tssr73352 7 81707082 to 81707098 16 - TSS region transcription start site region 73352
Gm32579 7 81708152 to 81716866 8714 - lncRNA gene predicted gene, 32579
Gm42400 7 81731403 to 81737634 6231 + lncRNA gene predicted gene, 42400
Gm18806 7 81742356 to 81744259 1903 + pseudogene predicted gene, 18806
Cpgi19359 7 81762298 to 81763868 1570 CpG island CpG island 19359
Tssr67511 7 81762927 to 81762943 16 + TSS region transcription start site region 67511
Tssr67512 7 81762947 to 81762997 50 + TSS region transcription start site region 67512
Ramac 7 81762953 to 81769490 6537 + protein coding gene RNA guanine-7 methyltransferase activating subunit
Tssr67513 7 81765931 to 81765936 5 + TSS region transcription start site region 67513
3110040N11Rik 7 81782182 to 81789478 7296 - protein coding gene RIKEN cDNA 3110040N11 gene
Cpgi19360 7 81788982 to 81789745 763 CpG island CpG island 19360
Tssr73353 7 81789426 to 81789490 64 - TSS region transcription start site region 73353
Gm45016 7 81789477 to 81794685 5208 + antisense lncRNA gene predicted gene 45016
Gm45845 7 81789738 to 81790319 581 - unclassified gene predicted gene 45845
Btbd1 7 81792074 to 81829431 37357 - protein coding gene BTB (POZ) domain containing 1
Cpgi19361 7 81828609 to 81830150 1541 CpG island CpG island 19361
Tssr73354 7 81829443 to 81829514 71 - TSS region transcription start site region 73354
Gm32695 7 81831661 to 81849058 17397 + lncRNA gene predicted gene, 32695
Tssr67514 7 81835585 to 81835615 30 + TSS region transcription start site region 67514
Tssr67515 7 81843228 to 81843235 7 + TSS region transcription start site region 67515
Gm10160 7 81855533 to 81855794 261 - protein coding gene predicted gene 10160
Cpgi19362 7 81858713 to 81859841 1128 CpG island CpG island 19362
Tssr67516 7 81858965 to 81858977 12 + TSS region transcription start site region 67516
Tssr67517 7 81858993 to 81859010 17 + TSS region transcription start site region 67517
Tm6sf1 7 81859001 to 81884079 25078 + protein coding gene transmembrane 6 superfamily member 1
Tssr67518 7 81859040 to 81859053 13 + TSS region transcription start site region 67518
Tssr67519 7 81859063 to 81859125 62 + TSS region transcription start site region 67519
Tssr67520 7 81859147 to 81859152 5 + TSS region transcription start site region 67520
Tssr67521 7 81859288 to 81859297 9 + TSS region transcription start site region 67521
Tssr67522 7 81859328 to 81859337 9 + TSS region transcription start site region 67522
Tssr2315 7 81859389 to 81859400 11 + TSS region transcription start site region 2315
Tssr67523 7 81859407 to 81859433 26 + TSS region transcription start site region 67523
Gm45014 7 81860293 to 81862527 2234 - antisense lncRNA gene predicted gene 45014
Tssr73355 7 81862510 to 81862521 11 - TSS region transcription start site region 73355
Tssr73356 7 81862523 to 81862530 7 - TSS region transcription start site region 73356
Tssr67524 7 81862578 to 81862587 9 + TSS region transcription start site region 67524
Tssr67525 7 81862624 to 81862659 35 + TSS region transcription start site region 67525
Tssr67526 7 81862674 to 81862692 18 + TSS region transcription start site region 67526
Tssr73357 7 81863311 to 81863326 15 - TSS region transcription start site region 73357
Tssr67527 7 81873041 to 81873053 12 + TSS region transcription start site region 67527
Gm45867 7 81874204 to 81876520 2316 + unclassified gene predicted gene 45867
Hdgfl3 7 81881256 to 81934459 53203 - protein coding gene HDGF like 3
Tssr73358 7 81885335 to 81885351 16 - TSS region transcription start site region 73358
Tssr73359 7 81904023 to 81904026 3 - TSS region transcription start site region 73359
Gm45088 7 81918943 to 81920350 1407 - unclassified gene predicted gene 45088
Tssr67528 7 81932875 to 81932895 20 + TSS region transcription start site region 67528
Cpgi19363 7 81933311 to 81935109 1798 CpG island CpG island 19363
Tssr73360 7 81933814 to 81933872 58 - TSS region transcription start site region 73360
Gm46013 7 81934065 to 82015926 81861 + protein coding gene predicted gene, 46013
Tssr73361 7 81934166 to 81934177 11 - TSS region transcription start site region 73361
Tssr73362 7 81934277 to 81934288 11 - TSS region transcription start site region 73362
Tssr73363 7 81934292 to 81934311 19 - TSS region transcription start site region 73363
Tssr73364 7 81934316 to 81934463 147 - TSS region transcription start site region 73364
Tssr73365 7 81934570 to 81934592 22 - TSS region transcription start site region 73365
Tssr73366 7 81934631 to 81934650 19 - TSS region transcription start site region 73366
Gm25907 7 81965710 to 81965834 124 + snoRNA gene predicted gene, 25907
Bnc1 7 81966672 to 81992292 25620 - protein coding gene basonuclin 1
Cpgi19364 7 81991386 to 81992963 1577 CpG island CpG island 19364
4833418N17Rik 7 81992002 to 81992618 616 + pseudogene RIKEN cDNA 4833418N17 gene
Tssr73367 7 81992277 to 81992314 37 - TSS region transcription start site region 73367
Tssr73368 7 81992582 to 81992593 11 - TSS region transcription start site region 73368
Tssr73369 7 81992668 to 81992679 11 - TSS region transcription start site region 73369
D7Mit347 7 82010132 to 82010242 110 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 347
D7Mit319 7 82038932 to 82039044 112 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 319
Cpgi19365 7 82056992 to 82057156 164 CpG island CpG island 19365
Gm20744 7 82070387 to 82081758 11371 + lincRNA gene predicted gene, 20744
Gm45056 7 82115766 to 82120432 4666 - lincRNA gene predicted gene 45056
Gm32850 7 82120053 to 82161719 41666 + lincRNA gene predicted gene, 32850