Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:81223555-81823609

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle19 7 30333060 to 81485905 51152845 QTL systematic lupus erythematosus susceptibility 19
Pde8a 7 81213804 to 81333622 119818 + protein coding gene phosphodiesterase 8A
Tssr67504 7 81226442 to 81226446 4 + TSS region transcription start site region 67504
Tssr67505 7 81243145 to 81243149 4 + TSS region transcription start site region 67505
Tssr67506 7 81296547 to 81296555 8 + TSS region transcription start site region 67506
Tssr2314 7 81313894 to 81313897 3 + TSS region transcription start site region 2314
Rps17 7 81342733 to 81345234 2501 - protein coding gene ribosomal protein S17
Cpgi19351 7 81344409 to 81345483 1074 CpG island CpG island 19351
Tssr73326 7 81345100 to 81345111 11 - TSS region transcription start site region 73326
Tssr73327 7 81345161 to 81345179 18 - TSS region transcription start site region 73327
Tssr73328 7 81345189 to 81345237 48 - TSS region transcription start site region 73328
Tssr73329 7 81345275 to 81345331 56 - TSS region transcription start site region 73329
Cpeb1 7 81347026 to 81455465 108439 - protein coding gene cytoplasmic polyadenylation element binding protein 1
Tssr73330 7 81372420 to 81372458 38 - TSS region transcription start site region 73330
Tssr73331 7 81372468 to 81372506 38 - TSS region transcription start site region 73331
Gm18922 7 81388714 to 81389619 905 + pseudogene predicted gene, 18922
Rpl7a-ps9 7 81445920 to 81446696 776 + pseudogene ribosomal protein L7A, pseudogene 9
Cpgi19352 7 81453252 to 81455554 2302 CpG island CpG island 19352
Tssr73332 7 81454751 to 81454764 13 - TSS region transcription start site region 73332
Tssr73333 7 81455386 to 81455397 11 - TSS region transcription start site region 73333
Tssr73334 7 81455441 to 81455478 37 - TSS region transcription start site region 73334
Tssr73335 7 81455489 to 81455501 12 - TSS region transcription start site region 73335
Cpeb1os1 7 81455895 to 81458006 2111 + unclassified gene cytoplasmic polyadenylation element binding protein 1, opposite strand 1
Ap3b2 7 81460399 to 81493925 33526 - protein coding gene adaptor-related protein complex 3, beta 2 subunit
Cpgi19353 7 81476822 to 81477399 577 CpG island CpG island 19353
Aem2 7 81485676 to 81485905 229 QTL anti-erythrocyte autoantibody modifier 2
D7Mit30 7 81485676 to 81485905 229 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 30
Tssr73336 7 81489802 to 81489815 13 - TSS region transcription start site region 73336
Gm45906 7 81492430 to 81493859 1429 - unclassified gene predicted gene 45906
Cpgi19354 7 81493206 to 81494055 849 CpG island CpG island 19354
Tssr73337 7 81493667 to 81493683 16 - TSS region transcription start site region 73337
Tssr73338 7 81493686 to 81493697 11 - TSS region transcription start site region 73338
Tssr73339 7 81493699 to 81493719 20 - TSS region transcription start site region 73339
Tssr73340 7 81493725 to 81493741 16 - TSS region transcription start site region 73340
Tssr73341 7 81493864 to 81493871 7 - TSS region transcription start site region 73341
Tssr73342 7 81493883 to 81493947 64 - TSS region transcription start site region 73342
BC048679 7 81494275 to 81498281 4006 - protein coding gene cDNA sequence BC048679
Cpgi19355 7 81495134 to 81495432 298 CpG island CpG island 19355
Tssr73343 7 81497160 to 81497170 10 - TSS region transcription start site region 73343
Tssr73344 7 81498273 to 81498287 14 - TSS region transcription start site region 73344
Gm45991 7 81501303 to 81505185 3882 + lncRNA gene predicted gene, 45991
Cpgi19356 7 81523158 to 81523746 588 CpG island CpG island 19356
Tssr67507 7 81523531 to 81523554 23 + TSS region transcription start site region 67507
2900076A07Rik 7 81523550 to 81531498 7948 + lincRNA gene RIKEN cDNA 2900076A07 gene
Tssr67508 7 81523555 to 81523609 54 + TSS region transcription start site region 67508
Mir1839 7 81529916 to 81529988 72 + miRNA gene microRNA 1839
Gm37829 7 81530309 to 81532521 2212 - unclassified gene predicted gene, 37829
Fsd2 7 81534354 to 81566981 32627 - protein coding gene fibronectin type III and SPRY domain containing 2
Tssr73345 7 81566939 to 81566993 54 - TSS region transcription start site region 73345
Tssr73346 7 81567000 to 81567011 11 - TSS region transcription start site region 73346
Cpgi19357 7 81571069 to 81572307 1238 CpG island CpG island 19357
Tssr67509 7 81571246 to 81571318 72 + TSS region transcription start site region 67509
Whamm 7 81571266 to 81596836 25570 + protein coding gene WAS protein homolog associated with actin, golgi membranes and microtubules
Tssr73347 7 81572241 to 81572261 20 - TSS region transcription start site region 73347
Tssr67510 7 81588871 to 81588888 17 + TSS region transcription start site region 67510
Gm45698 7 81590894 to 81592028 1134 + unclassified gene predicted gene 45698
Homer2 7 81600481 to 81706925 106444 - protein coding gene homer scaffolding protein 2
Gm44570 7 81610126 to 81613479 3353 + antisense lncRNA gene predicted gene 44570
Gm26149 7 81669728 to 81669835 107 + snRNA gene predicted gene, 26149
Tssr73348 7 81688477 to 81688482 5 - TSS region transcription start site region 73348
Cpgi19358 7 81706248 to 81707768 1520 CpG island CpG island 19358
Tssr73349 7 81706857 to 81706869 12 - TSS region transcription start site region 73349
Tssr73350 7 81706890 to 81706901 11 - TSS region transcription start site region 73350
Tssr73351 7 81706905 to 81706964 59 - TSS region transcription start site region 73351
Tssr73352 7 81707082 to 81707098 16 - TSS region transcription start site region 73352
Gm32579 7 81708152 to 81716866 8714 - lncRNA gene predicted gene, 32579
Gm42400 7 81731403 to 81737634 6231 + lncRNA gene predicted gene, 42400
Gm18806 7 81742356 to 81744259 1903 + pseudogene predicted gene, 18806
Cpgi19359 7 81762298 to 81763868 1570 CpG island CpG island 19359
Tssr67511 7 81762927 to 81762943 16 + TSS region transcription start site region 67511
Tssr67512 7 81762947 to 81762997 50 + TSS region transcription start site region 67512
Ramac 7 81762953 to 81769490 6537 + protein coding gene RNA guanine-7 methyltransferase activating subunit
Tssr67513 7 81765931 to 81765936 5 + TSS region transcription start site region 67513
3110040N11Rik 7 81782182 to 81789478 7296 - protein coding gene RIKEN cDNA 3110040N11 gene
Cpgi19360 7 81788982 to 81789745 763 CpG island CpG island 19360
Tssr73353 7 81789426 to 81789490 64 - TSS region transcription start site region 73353
Gm45016 7 81789477 to 81794685 5208 + antisense lncRNA gene predicted gene 45016
Gm45845 7 81789738 to 81790319 581 - unclassified gene predicted gene 45845
Btbd1 7 81792074 to 81829431 37357 - protein coding gene BTB (POZ) domain containing 1