Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:81086069-82057307

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle19 7 30333060 to 81485905 51152845 QTL systematic lupus erythematosus susceptibility 19
Alpk3 7 81057600 to 81105612 48012 + protein coding gene alpha-kinase 3
Tssr67486 7 81087178 to 81087201 23 + TSS region transcription start site region 67486
Tssr67487 7 81100729 to 81100738 9 + TSS region transcription start site region 67487
Tssr67488 7 81104939 to 81104942 3 + TSS region transcription start site region 67488
Tssr67489 7 81113260 to 81113272 12 + TSS region transcription start site region 67489
Tssr67490 7 81114799 to 81114808 9 + TSS region transcription start site region 67490
Slc28a1 7 81114799 to 81170416 55617 + protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
Tssr67491 7 81114816 to 81114847 31 + TSS region transcription start site region 67491
Tssr67492 7 81141850 to 81141864 14 + TSS region transcription start site region 67492
Tssr67493 7 81141904 to 81141921 17 + TSS region transcription start site region 67493
Ndufs6b 7 81161397 to 81161744 347 - pseudogene NADH:ubiquinone oxidoreductase subunit S6B
Tssr73320 7 81161744 to 81161755 11 - TSS region transcription start site region 73320
D7Dcr34 7 81168143 to 81168274 131 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 34
D7Mit163 7 81168158 to 81168298 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 163
Gm44968 7 81209728 to 81210787 1059 + lincRNA gene predicted gene 44968
1700023D08Rik 7 81212185 to 81213172 987 unclassified gene RIKEN cDNA 1700023D08 gene
Cpgi19350 7 81212218 to 81214473 2255 CpG island CpG island 19350
Tssr73321 7 81213125 to 81213160 35 - TSS region transcription start site region 73321
Tssr73322 7 81213201 to 81213213 12 - TSS region transcription start site region 73322
Tssr67494 7 81213258 to 81213284 26 + TSS region transcription start site region 67494
Tssr67495 7 81213287 to 81213322 35 + TSS region transcription start site region 67495
Tssr67496 7 81213323 to 81213342 19 + TSS region transcription start site region 67496
Tssr67497 7 81213345 to 81213359 14 + TSS region transcription start site region 67497
Tssr67498 7 81213494 to 81213496 2 + TSS region transcription start site region 67498
Tssr67499 7 81213567 to 81213632 65 + TSS region transcription start site region 67499
Tssr73323 7 81213651 to 81213671 20 - TSS region transcription start site region 73323
Tssr73324 7 81213675 to 81213680 5 - TSS region transcription start site region 73324
Tssr67500 7 81213751 to 81213763 12 + TSS region transcription start site region 67500
Tssr67501 7 81213777 to 81213876 99 + TSS region transcription start site region 67501
Pde8a 7 81213804 to 81333622 119818 + protein coding gene phosphodiesterase 8A
Tssr67502 7 81214045 to 81214066 21 + TSS region transcription start site region 67502
Tssr67503 7 81222061 to 81222064 3 + TSS region transcription start site region 67503
Gm7180 7 81222362 to 81222874 512 - pseudogene predicted pseudogene 7180
Tssr73325 7 81222870 to 81222884 14 - TSS region transcription start site region 73325
Tssr67504 7 81226442 to 81226446 4 + TSS region transcription start site region 67504
Tssr67505 7 81243145 to 81243149 4 + TSS region transcription start site region 67505
Tssr67506 7 81296547 to 81296555 8 + TSS region transcription start site region 67506
Tssr2314 7 81313894 to 81313897 3 + TSS region transcription start site region 2314
Rps17 7 81342733 to 81345234 2501 - protein coding gene ribosomal protein S17
Cpgi19351 7 81344409 to 81345483 1074 CpG island CpG island 19351
Tssr73326 7 81345100 to 81345111 11 - TSS region transcription start site region 73326
Tssr73327 7 81345161 to 81345179 18 - TSS region transcription start site region 73327
Tssr73328 7 81345189 to 81345237 48 - TSS region transcription start site region 73328
Tssr73329 7 81345275 to 81345331 56 - TSS region transcription start site region 73329
Cpeb1 7 81347026 to 81455465 108439 - protein coding gene cytoplasmic polyadenylation element binding protein 1
Tssr73330 7 81372420 to 81372458 38 - TSS region transcription start site region 73330
Tssr73331 7 81372468 to 81372506 38 - TSS region transcription start site region 73331
Gm18922 7 81388714 to 81389619 905 + pseudogene predicted gene, 18922
Rpl7a-ps9 7 81445920 to 81446696 776 + pseudogene ribosomal protein L7A, pseudogene 9
Cpgi19352 7 81453252 to 81455554 2302 CpG island CpG island 19352
Tssr73332 7 81454751 to 81454764 13 - TSS region transcription start site region 73332
Tssr73333 7 81455386 to 81455397 11 - TSS region transcription start site region 73333
Tssr73334 7 81455441 to 81455478 37 - TSS region transcription start site region 73334
Tssr73335 7 81455489 to 81455501 12 - TSS region transcription start site region 73335
Cpeb1os1 7 81455895 to 81458006 2111 + unclassified gene cytoplasmic polyadenylation element binding protein 1, opposite strand 1
Ap3b2 7 81460399 to 81493925 33526 - protein coding gene adaptor-related protein complex 3, beta 2 subunit
Cpgi19353 7 81476822 to 81477399 577 CpG island CpG island 19353
Aem2 7 81485676 to 81485905 229 QTL anti-erythrocyte autoantibody modifier 2
D7Mit30 7 81485676 to 81485905 229 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 30
Tssr73336 7 81489802 to 81489815 13 - TSS region transcription start site region 73336
Gm45906 7 81492430 to 81493859 1429 - unclassified gene predicted gene 45906
Cpgi19354 7 81493206 to 81494055 849 CpG island CpG island 19354
Tssr73337 7 81493667 to 81493683 16 - TSS region transcription start site region 73337
Tssr73338 7 81493686 to 81493697 11 - TSS region transcription start site region 73338
Tssr73339 7 81493699 to 81493719 20 - TSS region transcription start site region 73339
Tssr73340 7 81493725 to 81493741 16 - TSS region transcription start site region 73340
Tssr73341 7 81493864 to 81493871 7 - TSS region transcription start site region 73341
Tssr73342 7 81493883 to 81493947 64 - TSS region transcription start site region 73342
BC048679 7 81494275 to 81498281 4006 - protein coding gene cDNA sequence BC048679
Cpgi19355 7 81495134 to 81495432 298 CpG island CpG island 19355
Tssr73343 7 81497160 to 81497170 10 - TSS region transcription start site region 73343
Tssr73344 7 81498273 to 81498287 14 - TSS region transcription start site region 73344
Gm45991 7 81501303 to 81505185 3882 + lncRNA gene predicted gene, 45991
Cpgi19356 7 81523158 to 81523746 588 CpG island CpG island 19356
Tssr67507 7 81523531 to 81523554 23 + TSS region transcription start site region 67507
2900076A07Rik 7 81523550 to 81531498 7948 + lincRNA gene RIKEN cDNA 2900076A07 gene
Tssr67508 7 81523555 to 81523609 54 + TSS region transcription start site region 67508
Mir1839 7 81529916 to 81529988 72 + miRNA gene microRNA 1839
Gm37829 7 81530309 to 81532521 2212 - unclassified gene predicted gene, 37829
Fsd2 7 81534354 to 81566981 32627 - protein coding gene fibronectin type III and SPRY domain containing 2
Tssr73345 7 81566939 to 81566993 54 - TSS region transcription start site region 73345
Tssr73346 7 81567000 to 81567011 11 - TSS region transcription start site region 73346
Cpgi19357 7 81571069 to 81572307 1238 CpG island CpG island 19357
Tssr67509 7 81571246 to 81571318 72 + TSS region transcription start site region 67509
Whamm 7 81571266 to 81596836 25570 + protein coding gene WAS protein homolog associated with actin, golgi membranes and microtubules
Tssr73347 7 81572241 to 81572261 20 - TSS region transcription start site region 73347
Tssr67510 7 81588871 to 81588888 17 + TSS region transcription start site region 67510
Gm45698 7 81590894 to 81592028 1134 + unclassified gene predicted gene 45698
Homer2 7 81600481 to 81706925 106444 - protein coding gene homer scaffolding protein 2
Gm44570 7 81610126 to 81613479 3353 + antisense lncRNA gene predicted gene 44570
Gm26149 7 81669728 to 81669835 107 + snRNA gene predicted gene, 26149
Tssr73348 7 81688477 to 81688482 5 - TSS region transcription start site region 73348
Cpgi19358 7 81706248 to 81707768 1520 CpG island CpG island 19358
Tssr73349 7 81706857 to 81706869 12 - TSS region transcription start site region 73349
Tssr73350 7 81706890 to 81706901 11 - TSS region transcription start site region 73350
Tssr73351 7 81706905 to 81706964 59 - TSS region transcription start site region 73351
Tssr73352 7 81707082 to 81707098 16 - TSS region transcription start site region 73352
Gm32579 7 81708152 to 81716866 8714 - lncRNA gene predicted gene, 32579
Gm42400 7 81731403 to 81737634 6231 + lncRNA gene predicted gene, 42400
Gm18806 7 81742356 to 81744259 1903 + pseudogene predicted gene, 18806
Cpgi19359 7 81762298 to 81763868 1570 CpG island CpG island 19359
Tssr67511 7 81762927 to 81762943 16 + TSS region transcription start site region 67511
Tssr67512 7 81762947 to 81762997 50 + TSS region transcription start site region 67512
Ramac 7 81762953 to 81769490 6537 + protein coding gene RNA guanine-7 methyltransferase activating subunit
Tssr67513 7 81765931 to 81765936 5 + TSS region transcription start site region 67513
3110040N11Rik 7 81782182 to 81789478 7296 - protein coding gene RIKEN cDNA 3110040N11 gene
Cpgi19360 7 81788982 to 81789745 763 CpG island CpG island 19360
Tssr73353 7 81789426 to 81789490 64 - TSS region transcription start site region 73353
Gm45016 7 81789477 to 81794685 5208 + antisense lncRNA gene predicted gene 45016
Gm45845 7 81789738 to 81790319 581 - unclassified gene predicted gene 45845
Btbd1 7 81792074 to 81829431 37357 - protein coding gene BTB (POZ) domain containing 1
Cpgi19361 7 81828609 to 81830150 1541 CpG island CpG island 19361
Tssr73354 7 81829443 to 81829514 71 - TSS region transcription start site region 73354
Gm32695 7 81831661 to 81849058 17397 + lncRNA gene predicted gene, 32695
Tssr67514 7 81835585 to 81835615 30 + TSS region transcription start site region 67514
Tssr67515 7 81843228 to 81843235 7 + TSS region transcription start site region 67515
Gm10160 7 81855533 to 81855794 261 - protein coding gene predicted gene 10160
Cpgi19362 7 81858713 to 81859841 1128 CpG island CpG island 19362
Tssr67516 7 81858965 to 81858977 12 + TSS region transcription start site region 67516
Tssr67517 7 81858993 to 81859010 17 + TSS region transcription start site region 67517
Tm6sf1 7 81859001 to 81884079 25078 + protein coding gene transmembrane 6 superfamily member 1
Tssr67518 7 81859040 to 81859053 13 + TSS region transcription start site region 67518
Tssr67519 7 81859063 to 81859125 62 + TSS region transcription start site region 67519
Tssr67520 7 81859147 to 81859152 5 + TSS region transcription start site region 67520
Tssr67521 7 81859288 to 81859297 9 + TSS region transcription start site region 67521
Tssr67522 7 81859328 to 81859337 9 + TSS region transcription start site region 67522
Tssr2315 7 81859389 to 81859400 11 + TSS region transcription start site region 2315
Tssr67523 7 81859407 to 81859433 26 + TSS region transcription start site region 67523
Gm45014 7 81860293 to 81862527 2234 - antisense lncRNA gene predicted gene 45014
Tssr73355 7 81862510 to 81862521 11 - TSS region transcription start site region 73355
Tssr73356 7 81862523 to 81862530 7 - TSS region transcription start site region 73356
Tssr67524 7 81862578 to 81862587 9 + TSS region transcription start site region 67524
Tssr67525 7 81862624 to 81862659 35 + TSS region transcription start site region 67525
Tssr67526 7 81862674 to 81862692 18 + TSS region transcription start site region 67526
Tssr73357 7 81863311 to 81863326 15 - TSS region transcription start site region 73357
Tssr67527 7 81873041 to 81873053 12 + TSS region transcription start site region 67527
Gm45867 7 81874204 to 81876520 2316 + unclassified gene predicted gene 45867
Hdgfl3 7 81881256 to 81934459 53203 - protein coding gene HDGF like 3
Tssr73358 7 81885335 to 81885351 16 - TSS region transcription start site region 73358
Tssr73359 7 81904023 to 81904026 3 - TSS region transcription start site region 73359
Gm45088 7 81918943 to 81920350 1407 - unclassified gene predicted gene 45088
Tssr67528 7 81932875 to 81932895 20 + TSS region transcription start site region 67528
Cpgi19363 7 81933311 to 81935109 1798 CpG island CpG island 19363
Tssr73360 7 81933814 to 81933872 58 - TSS region transcription start site region 73360
Gm46013 7 81934065 to 82015926 81861 + protein coding gene predicted gene, 46013
Tssr73361 7 81934166 to 81934177 11 - TSS region transcription start site region 73361
Tssr73362 7 81934277 to 81934288 11 - TSS region transcription start site region 73362
Tssr73363 7 81934292 to 81934311 19 - TSS region transcription start site region 73363
Tssr73364 7 81934316 to 81934463 147 - TSS region transcription start site region 73364
Tssr73365 7 81934570 to 81934592 22 - TSS region transcription start site region 73365
Tssr73366 7 81934631 to 81934650 19 - TSS region transcription start site region 73366
Gm25907 7 81965710 to 81965834 124 + snoRNA gene predicted gene, 25907
Bnc1 7 81966672 to 81992292 25620 - protein coding gene basonuclin 1
Cpgi19364 7 81991386 to 81992963 1577 CpG island CpG island 19364
4833418N17Rik 7 81992002 to 81992618 616 + pseudogene RIKEN cDNA 4833418N17 gene
Tssr73367 7 81992277 to 81992314 37 - TSS region transcription start site region 73367
Tssr73368 7 81992582 to 81992593 11 - TSS region transcription start site region 73368
Tssr73369 7 81992668 to 81992679 11 - TSS region transcription start site region 73369
D7Mit347 7 82010132 to 82010242 110 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 347
D7Mit319 7 82038932 to 82039044 112 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 319
Cpgi19365 7 82056992 to 82057156 164 CpG island CpG island 19365