Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:80803751-81623763

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle19 7 30333060 to 81485905 51152845 QTL systematic lupus erythematosus susceptibility 19
Iqgap1 7 80711583 to 80815549 103966 - protein coding gene IQ motif containing GTPase activating protein 1
Tssr73308 7 80815771 to 80815810 39 - TSS region transcription start site region 73308
Tssr73309 7 80815838 to 80815880 42 - TSS region transcription start site region 73309
Tssr73310 7 80826001 to 80826023 22 - TSS region transcription start site region 73310
Tssr67467 7 80830745 to 80830756 11 + TSS region transcription start site region 67467
Tssr67468 7 80830811 to 80830846 35 + TSS region transcription start site region 67468
Cpgi19342 7 80860834 to 80861464 630 CpG island CpG island 19342
Tssr67469 7 80860909 to 80860972 63 + TSS region transcription start site region 67469
Zscan2 7 80860920 to 80876537 15617 + protein coding gene zinc finger and SCAN domain containing 2
Tssr67470 7 80862229 to 80862243 14 + TSS region transcription start site region 67470
Cpgi19343 7 80875355 to 80876288 933 CpG island CpG island 19343
Wdr73 7 80890723 to 80901269 10546 - protein coding gene WD repeat domain 73
Gm32112 7 80893688 to 80894345 657 + lncRNA gene predicted gene, 32112
Cpgi19344 7 80901014 to 80901460 446 CpG island CpG island 19344
Tssr73311 7 80901226 to 80901243 17 - TSS region transcription start site region 73311
Nmb 7 80902227 to 80905076 2849 - protein coding gene neuromedin B
Cpgi19345 7 80904779 to 80905213 434 CpG island CpG island 19345
Tssr73312 7 80905012 to 80905026 14 - TSS region transcription start site region 73312
Tssr73313 7 80905060 to 80905081 21 - TSS region transcription start site region 73313
Gm16171 7 80907825 to 80908148 323 + pseudogene predicted gene 16171
Gm45718 7 80910373 to 80914166 3793 - unclassified gene predicted gene 45718
Sec11a 7 80915379 to 80947550 32171 - protein coding gene SEC11 homolog A, signal peptidase complex subunit
Tssr73314 7 80923267 to 80923274 7 - TSS region transcription start site region 73314
Tssr73315 7 80929454 to 80929458 4 - TSS region transcription start site region 73315
Cpgi19346 7 80947265 to 80948096 831 CpG island CpG island 19346
Tssr73316 7 80947499 to 80947579 80 - TSS region transcription start site region 73316
Tssr73317 7 80947736 to 80947764 28 - TSS region transcription start site region 73317
Tssr73318 7 80947765 to 80947777 12 - TSS region transcription start site region 73318
Gm32178 7 80956405 to 80981429 25024 - lncRNA gene predicted gene, 32178
Gm18782 7 80979893 to 80981291 1398 + pseudogene predicted gene, 18782
Gm44899 7 80980846 to 80993415 12569 - lincRNA gene predicted gene 44899
Cpgi19347 7 80992729 to 80994709 1980 CpG island CpG island 19347
Tssr67471 7 80993427 to 80993482 55 + TSS region transcription start site region 67471
Tssr73319 7 80993552 to 80993583 31 - TSS region transcription start site region 73319
Tssr67472 7 80993646 to 80993657 11 + TSS region transcription start site region 67472
Tssr67473 7 80993658 to 80993698 40 + TSS region transcription start site region 67473
Zfp592 7 80993684 to 81045162 51478 + protein coding gene zinc finger protein 592
Tssr67474 7 80993699 to 80993714 15 + TSS region transcription start site region 67474
Tssr67475 7 80994014 to 80994016 2 + TSS region transcription start site region 67475
Gm44967 7 80994683 to 80995313 630 + unclassified gene predicted gene 44967
Tssr67476 7 80994888 to 80994892 4 + TSS region transcription start site region 67476
Tssr67477 7 81004840 to 81004841 1 + TSS region transcription start site region 67477
Tssr67478 7 81004967 to 81004978 11 + TSS region transcription start site region 67478
Tssr67479 7 81005005 to 81005014 9 + TSS region transcription start site region 67479
Tssr67480 7 81005026 to 81005037 11 + TSS region transcription start site region 67480
Tssr67481 7 81005363 to 81005367 4 + TSS region transcription start site region 67481
Tssr67482 7 81023839 to 81023862 23 + TSS region transcription start site region 67482
Tssr67483 7 81031565 to 81031569 4 + TSS region transcription start site region 67483
Cpgi19348 7 81057545 to 81057811 266 CpG island CpG island 19348
Tssr67484 7 81057583 to 81057588 5 + TSS region transcription start site region 67484
Tssr67485 7 81057589 to 81057603 14 + TSS region transcription start site region 67485
Alpk3 7 81057600 to 81105612 48012 + protein coding gene alpha-kinase 3
Platr32 7 81059113 to 81066307 7194 + sense intronic lncRNA gene pluripotency associated transcript 32
Cpgi19349 7 81077593 to 81077990 397 CpG island CpG island 19349
Tssr67486 7 81087178 to 81087201 23 + TSS region transcription start site region 67486
Tssr67487 7 81100729 to 81100738 9 + TSS region transcription start site region 67487
Tssr67488 7 81104939 to 81104942 3 + TSS region transcription start site region 67488
Tssr67489 7 81113260 to 81113272 12 + TSS region transcription start site region 67489
Slc28a1 7 81114799 to 81170416 55617 + protein coding gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
Tssr67490 7 81114799 to 81114808 9 + TSS region transcription start site region 67490
Tssr67491 7 81114816 to 81114847 31 + TSS region transcription start site region 67491
Tssr67492 7 81141850 to 81141864 14 + TSS region transcription start site region 67492
Tssr67493 7 81141904 to 81141921 17 + TSS region transcription start site region 67493
Ndufs6b 7 81161397 to 81161744 347 - pseudogene NADH:ubiquinone oxidoreductase subunit S6B
Tssr73320 7 81161744 to 81161755 11 - TSS region transcription start site region 73320
D7Dcr34 7 81168143 to 81168274 131 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 34
D7Mit163 7 81168158 to 81168298 140 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 163
Gm44968 7 81209728 to 81210787 1059 + lincRNA gene predicted gene 44968
1700023D08Rik 7 81212185 to 81213172 987 unclassified gene RIKEN cDNA 1700023D08 gene
Cpgi19350 7 81212218 to 81214473 2255 CpG island CpG island 19350
Tssr73321 7 81213125 to 81213160 35 - TSS region transcription start site region 73321
Tssr73322 7 81213201 to 81213213 12 - TSS region transcription start site region 73322
Tssr67494 7 81213258 to 81213284 26 + TSS region transcription start site region 67494
Tssr67495 7 81213287 to 81213322 35 + TSS region transcription start site region 67495
Tssr67496 7 81213323 to 81213342 19 + TSS region transcription start site region 67496
Tssr67497 7 81213345 to 81213359 14 + TSS region transcription start site region 67497
Tssr67498 7 81213494 to 81213496 2 + TSS region transcription start site region 67498
Tssr67499 7 81213567 to 81213632 65 + TSS region transcription start site region 67499
Tssr73323 7 81213651 to 81213671 20 - TSS region transcription start site region 73323
Tssr73324 7 81213675 to 81213680 5 - TSS region transcription start site region 73324
Tssr67500 7 81213751 to 81213763 12 + TSS region transcription start site region 67500
Tssr67501 7 81213777 to 81213876 99 + TSS region transcription start site region 67501
Pde8a 7 81213804 to 81333622 119818 + protein coding gene phosphodiesterase 8A
Tssr67502 7 81214045 to 81214066 21 + TSS region transcription start site region 67502
Tssr67503 7 81222061 to 81222064 3 + TSS region transcription start site region 67503
Gm7180 7 81222362 to 81222874 512 - pseudogene predicted pseudogene 7180
Tssr73325 7 81222870 to 81222884 14 - TSS region transcription start site region 73325
Tssr67504 7 81226442 to 81226446 4 + TSS region transcription start site region 67504
Tssr67505 7 81243145 to 81243149 4 + TSS region transcription start site region 67505
Tssr67506 7 81296547 to 81296555 8 + TSS region transcription start site region 67506
Tssr2314 7 81313894 to 81313897 3 + TSS region transcription start site region 2314
Rps17 7 81342733 to 81345234 2501 - protein coding gene ribosomal protein S17
Cpgi19351 7 81344409 to 81345483 1074 CpG island CpG island 19351
Tssr73326 7 81345100 to 81345111 11 - TSS region transcription start site region 73326
Tssr73327 7 81345161 to 81345179 18 - TSS region transcription start site region 73327
Tssr73328 7 81345189 to 81345237 48 - TSS region transcription start site region 73328
Tssr73329 7 81345275 to 81345331 56 - TSS region transcription start site region 73329
Cpeb1 7 81347026 to 81455465 108439 - protein coding gene cytoplasmic polyadenylation element binding protein 1
Tssr73330 7 81372420 to 81372458 38 - TSS region transcription start site region 73330
Tssr73331 7 81372468 to 81372506 38 - TSS region transcription start site region 73331
Gm18922 7 81388714 to 81389619 905 + pseudogene predicted gene, 18922
Rpl7a-ps9 7 81445920 to 81446696 776 + pseudogene ribosomal protein L7A, pseudogene 9
Cpgi19352 7 81453252 to 81455554 2302 CpG island CpG island 19352
Tssr73332 7 81454751 to 81454764 13 - TSS region transcription start site region 73332
Tssr73333 7 81455386 to 81455397 11 - TSS region transcription start site region 73333
Tssr73334 7 81455441 to 81455478 37 - TSS region transcription start site region 73334
Tssr73335 7 81455489 to 81455501 12 - TSS region transcription start site region 73335
Cpeb1os1 7 81455895 to 81458006 2111 + unclassified gene cytoplasmic polyadenylation element binding protein 1, opposite strand 1
Ap3b2 7 81460399 to 81493925 33526 - protein coding gene adaptor-related protein complex 3, beta 2 subunit
Cpgi19353 7 81476822 to 81477399 577 CpG island CpG island 19353
D7Mit30 7 81485676 to 81485905 229 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 30
Aem2 7 81485676 to 81485905 229 QTL anti-erythrocyte autoantibody modifier 2
Tssr73336 7 81489802 to 81489815 13 - TSS region transcription start site region 73336
Gm45906 7 81492430 to 81493859 1429 - unclassified gene predicted gene 45906
Cpgi19354 7 81493206 to 81494055 849 CpG island CpG island 19354
Tssr73337 7 81493667 to 81493683 16 - TSS region transcription start site region 73337
Tssr73338 7 81493686 to 81493697 11 - TSS region transcription start site region 73338
Tssr73339 7 81493699 to 81493719 20 - TSS region transcription start site region 73339
Tssr73340 7 81493725 to 81493741 16 - TSS region transcription start site region 73340
Tssr73341 7 81493864 to 81493871 7 - TSS region transcription start site region 73341
Tssr73342 7 81493883 to 81493947 64 - TSS region transcription start site region 73342
BC048679 7 81494275 to 81498281 4006 - protein coding gene cDNA sequence BC048679
Cpgi19355 7 81495134 to 81495432 298 CpG island CpG island 19355
Tssr73343 7 81497160 to 81497170 10 - TSS region transcription start site region 73343
Tssr73344 7 81498273 to 81498287 14 - TSS region transcription start site region 73344
Gm45991 7 81501303 to 81505185 3882 + lncRNA gene predicted gene, 45991
Cpgi19356 7 81523158 to 81523746 588 CpG island CpG island 19356
Tssr67507 7 81523531 to 81523554 23 + TSS region transcription start site region 67507
2900076A07Rik 7 81523550 to 81531498 7948 + lincRNA gene RIKEN cDNA 2900076A07 gene
Tssr67508 7 81523555 to 81523609 54 + TSS region transcription start site region 67508
Mir1839 7 81529916 to 81529988 72 + miRNA gene microRNA 1839
Gm37829 7 81530309 to 81532521 2212 - unclassified gene predicted gene, 37829
Fsd2 7 81534354 to 81566981 32627 - protein coding gene fibronectin type III and SPRY domain containing 2
Tssr73345 7 81566939 to 81566993 54 - TSS region transcription start site region 73345
Tssr73346 7 81567000 to 81567011 11 - TSS region transcription start site region 73346
Cpgi19357 7 81571069 to 81572307 1238 CpG island CpG island 19357
Tssr67509 7 81571246 to 81571318 72 + TSS region transcription start site region 67509
Whamm 7 81571266 to 81596836 25570 + protein coding gene WAS protein homolog associated with actin, golgi membranes and microtubules
Tssr73347 7 81572241 to 81572261 20 - TSS region transcription start site region 73347
Tssr67510 7 81588871 to 81588888 17 + TSS region transcription start site region 67510
Gm45698 7 81590894 to 81592028 1134 + unclassified gene predicted gene 45698
Homer2 7 81600481 to 81706925 106444 - protein coding gene homer scaffolding protein 2
Gm44570 7 81610126 to 81613479 3353 + antisense lncRNA gene predicted gene 44570