Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:79882265-82013096

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492 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sle19 7 30333060 to 81485905 51152845 QTL systematic lupus erythematosus susceptibility 19
Hfhl1 7 57574300 to 80632588 23058288 QTL high-frequency hearing loss 1
Ap3s2 7 79875325 to 79920640 45315 - protein coding gene adaptor-related protein complex 3, sigma 2 subunit
Tssr73193 7 79884611 to 79884614 3 - TSS region transcription start site region 73193
Tssr2309 7 79891101 to 79891105 4 + TSS region transcription start site region 2309
Gm26646 7 79916937 to 79920641 3704 + antisense lncRNA gene predicted gene, 26646
Cpgi19318 7 79920396 to 79920937 541 CpG island CpG island 19318
Tssr73194 7 79920599 to 79920658 59 - TSS region transcription start site region 73194
5430400D12Rik 7 79920723 to 79922521 1798 + bidirectional promoter lncRNA gene RIKEN cDNA 5430400D12 gene
Gm44950 7 79922572 to 79924867 2295 - unclassified gene predicted gene 44950
Tssr73195 7 79924844 to 79924847 3 - TSS region transcription start site region 73195
Arpin 7 79925359 to 79935264 9905 - protein coding gene actin-related protein 2/3 complex inhibitor
Cpgi19319 7 79935009 to 79935395 386 CpG island CpG island 19319
Tssr73196 7 79935241 to 79935255 14 - TSS region transcription start site region 73196
Tssr73197 7 79935258 to 79935371 113 - TSS region transcription start site region 73197
Gm31966 7 79935518 to 79939014 3496 + lncRNA gene predicted gene, 31966
Gm24541 7 79949187 to 79949282 95 + miRNA gene predicted gene, 24541
Tssr67379 7 80010920 to 80010958 38 + TSS region transcription start site region 67379
Tssr67380 7 80014214 to 80014217 3 + TSS region transcription start site region 67380
Tssr73198 7 80014956 to 80014992 36 - TSS region transcription start site region 73198
Cpgi19320 7 80024588 to 80025553 965 CpG island CpG island 19320
Zfp710 7 80024814 to 80092751 67937 + protein coding gene zinc finger protein 710
Tssr67381 7 80024827 to 80024841 14 + TSS region transcription start site region 67381
Tssr67382 7 80024847 to 80024883 36 + TSS region transcription start site region 67382
Tssr67383 7 80024891 to 80024907 16 + TSS region transcription start site region 67383
Tssr73199 7 80025113 to 80025135 22 - TSS region transcription start site region 73199
Tssr67384 7 80025273 to 80025284 11 + TSS region transcription start site region 67384
Tssr67385 7 80025301 to 80025320 19 + TSS region transcription start site region 67385
Tssr67386 7 80025813 to 80025829 16 + TSS region transcription start site region 67386
Tssr67387 7 80025906 to 80025921 15 + TSS region transcription start site region 67387
Tssr67388 7 80025933 to 80025950 17 + TSS region transcription start site region 67388
Tssr67389 7 80025993 to 80026028 35 + TSS region transcription start site region 67389
Cpgi19321 7 80026119 to 80027890 1771 CpG island CpG island 19321
Tssr67390 7 80026161 to 80026192 31 + TSS region transcription start site region 67390
Tssr67391 7 80026195 to 80026215 20 + TSS region transcription start site region 67391
Tssr67392 7 80026347 to 80026369 22 + TSS region transcription start site region 67392
Tssr67393 7 80026370 to 80026394 24 + TSS region transcription start site region 67393
Tssr67394 7 80026632 to 80026658 26 + TSS region transcription start site region 67394
Tssr67395 7 80027114 to 80027147 33 + TSS region transcription start site region 67395
Tssr67396 7 80027150 to 80027196 46 + TSS region transcription start site region 67396
Tssr67397 7 80027485 to 80027507 22 + TSS region transcription start site region 67397
Tssr67398 7 80027606 to 80027610 4 + TSS region transcription start site region 67398
Tssr67399 7 80028369 to 80028374 5 + TSS region transcription start site region 67399
Tssr67400 7 80029910 to 80029927 17 + TSS region transcription start site region 67400
Tssr67401 7 80030744 to 80030753 9 + TSS region transcription start site region 67401
Tssr67402 7 80030758 to 80030774 16 + TSS region transcription start site region 67402
D7Mit162 7 80031574 to 80031700 126 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 162
Gm44951 7 80036705 to 80038728 2023 + unclassified gene predicted gene 44951
Tssr67403 7 80038331 to 80038342 11 + TSS region transcription start site region 67403
Tssr67404 7 80040043 to 80040057 14 + TSS region transcription start site region 67404
Tssr67405 7 80040239 to 80040261 22 + TSS region transcription start site region 67405
Tssr73200 7 80056182 to 80056196 14 - TSS region transcription start site region 73200
Gm21057 7 80062710 to 80075257 12547 - antisense lncRNA gene predicted gene, 21057
Tssr73201 7 80066256 to 80066260 4 - TSS region transcription start site region 73201
Tssr73202 7 80074874 to 80074887 13 - TSS region transcription start site region 73202
Tssr73203 7 80075265 to 80075268 3 - TSS region transcription start site region 73203
Tssr67406 7 80081939 to 80081953 14 + TSS region transcription start site region 67406
Tssr67407 7 80082310 to 80082331 21 + TSS region transcription start site region 67407
Tssr67408 7 80082370 to 80082387 17 + TSS region transcription start site region 67408
Gm44949 7 80088982 to 80090431 1449 - antisense lncRNA gene predicted gene 44949
Tssr67409 7 80090591 to 80090618 27 + TSS region transcription start site region 67409
Tssr67410 7 80091330 to 80091343 13 + TSS region transcription start site region 67410
Tssr67411 7 80091674 to 80091684 10 + TSS region transcription start site region 67411
Idh2 7 80094846 to 80115392 20546 - protein coding gene isocitrate dehydrogenase 2 (NADP+), mitochondrial
Tssr73204 7 80096576 to 80096591 15 - TSS region transcription start site region 73204
Tssr73205 7 80099091 to 80099102 11 - TSS region transcription start site region 73205
Gm45203 7 80110804 to 80112634 1830 - unclassified gene predicted gene 45203
Tssr73206 7 80113970 to 80114009 39 - TSS region transcription start site region 73206
Cpgi19322 7 80114458 to 80115791 1333 CpG island CpG island 19322
Tssr73207 7 80115294 to 80115355 61 - TSS region transcription start site region 73207
Tssr73208 7 80130408 to 80130422 14 - TSS region transcription start site region 73208
Tssr67412 7 80153245 to 80153250 5 + TSS region transcription start site region 67412
Gm45202 7 80155169 to 80156771 1602 + lincRNA gene predicted gene 45202
D7Mit200 7 80166556 to 80166705 149 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 200
Tssr67413 7 80186297 to 80186326 29 + TSS region transcription start site region 67413
Cpgi19323 7 80186334 to 80187312 978 CpG island CpG island 19323
Tssr67414 7 80186698 to 80186731 33 + TSS region transcription start site region 67414
Tssr67415 7 80186835 to 80186904 69 + TSS region transcription start site region 67415
Sema4b 7 80186841 to 80226527 39686 + protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
Tssr67416 7 80186909 to 80186932 23 + TSS region transcription start site region 67416
Cpgi19324 7 80197998 to 80199200 1202 CpG island CpG island 19324
Tssr67417 7 80198390 to 80198458 68 + TSS region transcription start site region 67417
Tssr67418 7 80198564 to 80198628 64 + TSS region transcription start site region 67418
Gm45206 7 80209394 to 80211678 2284 + unclassified gene predicted gene 45206
Tssr67419 7 80213940 to 80213957 17 + TSS region transcription start site region 67419
Tssr67420 7 80220953 to 80220957 4 + TSS region transcription start site region 67420
Cib1 7 80227156 to 80232805 5649 - protein coding gene calcium and integrin binding 1 (calmyrin)
Cpgi19325 7 80232140 to 80233169 1029 CpG island CpG island 19325
Tssr73209 7 80232479 to 80232498 19 - TSS region transcription start site region 73209
Tssr73210 7 80232556 to 80232633 77 - TSS region transcription start site region 73210
Tssr73211 7 80232752 to 80232842 90 - TSS region transcription start site region 73211
Tssr67421 7 80232862 to 80232945 83 + TSS region transcription start site region 67421
Gdpgp1 7 80232893 to 80241420 8527 + protein coding gene GDP-D-glucose phosphorylase 1
Gm15504 7 80237680 to 80237944 264 - pseudogene predicted gene 15504
Cpgi19326 7 80246114 to 80246805 691 CpG island CpG island 19326
Tssr2310 7 80246359 to 80246364 5 + TSS region transcription start site region 2310
Tssr67422 7 80246369 to 80246371 2 + TSS region transcription start site region 67422
Tssr67423 7 80246375 to 80246429 54 + TSS region transcription start site region 67423
Ttll13 7 80246376 to 80260821 14445 + protein coding gene tubulin tyrosine ligase-like family, member 13
Tssr67424 7 80246430 to 80246434 4 + TSS region transcription start site region 67424
Tssr67425 7 80246447 to 80246456 9 + TSS region transcription start site region 67425
Tssr67426 7 80246506 to 80246520 14 + TSS region transcription start site region 67426
Tssr67427 7 80246529 to 80246579 50 + TSS region transcription start site region 67427
Cpgi19327 7 80261058 to 80261845 787 CpG island CpG island 19327
Tssr67428 7 80261202 to 80261257 55 + TSS region transcription start site region 67428
Ngrn 7 80261215 to 80265374 4159 + protein coding gene neugrin, neurite outgrowth associated
Cpgi19328 7 80269566 to 80270129 563 CpG island CpG island 19328
Tssr67429 7 80269632 to 80269726 94 + TSS region transcription start site region 67429
Vps33b 7 80269632 to 80291579 21947 + protein coding gene vacuolar protein sorting 33B
Tssr2311 7 80285120 to 80285131 11 + TSS region transcription start site region 2311
Tssr67430 7 80289999 to 80290007 8 + TSS region transcription start site region 67430
Tssr67431 7 80291246 to 80291271 25 + TSS region transcription start site region 67431
Cpgi19329 7 80294146 to 80295122 976 CpG island CpG island 19329
Prc1 7 80294451 to 80316259 21808 + protein coding gene protein regulator of cytokinesis 1
Tssr67432 7 80294459 to 80294492 33 + TSS region transcription start site region 67432
Tssr67433 7 80294541 to 80294550 9 + TSS region transcription start site region 67433
Tssr67434 7 80294557 to 80294565 8 + TSS region transcription start site region 67434
Rccd1 7 80294591 to 80324696 30105 - protein coding gene RCC1 domain containing 1
6330403N20Rik 7 80297728 to 80299616 1888 - lincRNA gene RIKEN cDNA 6330403N20 gene
Cpgi19330 7 80323991 to 80324474 483 CpG island CpG island 19330
Tssr73212 7 80324099 to 80324112 13 - TSS region transcription start site region 73212
Tssr73213 7 80324115 to 80324137 22 - TSS region transcription start site region 73213
Tssr73214 7 80324418 to 80324458 40 - TSS region transcription start site region 73214
Unc45a 7 80325292 to 80341000 15708 - protein coding gene unc-45 myosin chaperone A
Cpgi19331 7 80339528 to 80340498 970 CpG island CpG island 19331
Tssr73215 7 80339990 to 80340010 20 - TSS region transcription start site region 73215
Tssr73216 7 80340139 to 80340150 11 - TSS region transcription start site region 73216
Tssr73217 7 80340152 to 80340210 58 - TSS region transcription start site region 73217
Tssr73218 7 80340214 to 80340231 17 - TSS region transcription start site region 73218
Cpgi19332 7 80342883 to 80343504 621 CpG island CpG island 19332
Hddc3 7 80343074 to 80346716 3642 + protein coding gene HD domain containing 3
Tssr67435 7 80343091 to 80343146 55 + TSS region transcription start site region 67435
Tssr67436 7 80343165 to 80343188 23 + TSS region transcription start site region 67436
Gm18310 7 80346880 to 80347389 509 - pseudogene predicted gene, 18310
Man2a2 7 80349097 to 80371375 22278 - protein coding gene mannosidase 2, alpha 2
Tssr73219 7 80349551 to 80349560 9 - TSS region transcription start site region 73219
Tssr73220 7 80368847 to 80368857 10 - TSS region transcription start site region 73220
Tssr73221 7 80368979 to 80368982 3 - TSS region transcription start site region 73221
Tssr67437 7 80370319 to 80370359 40 + TSS region transcription start site region 67437
Cpgi19333 7 80370412 to 80371811 1399 CpG island CpG island 19333
Tssr73222 7 80370783 to 80370790 7 - TSS region transcription start site region 73222
Tssr73223 7 80370815 to 80370828 13 - TSS region transcription start site region 73223
Tssr73224 7 80370843 to 80370869 26 - TSS region transcription start site region 73224
Tssr73225 7 80371197 to 80371368 171 - TSS region transcription start site region 73225
Tssr73226 7 80371405 to 80371416 11 - TSS region transcription start site region 73226
Tssr73227 7 80371481 to 80371494 13 - TSS region transcription start site region 73227
Tssr67438 7 80372451 to 80372455 4 + TSS region transcription start site region 67438
Fes 7 80377756 to 80387946 10190 - protein coding gene feline sarcoma oncogene
Tssr73228 7 80384539 to 80384543 4 - TSS region transcription start site region 73228
Tssr73229 7 80385557 to 80385622 65 - TSS region transcription start site region 73229
Tssr73230 7 80385673 to 80385684 11 - TSS region transcription start site region 73230
Cpgi19334 7 80386772 to 80387438 666 CpG island CpG island 19334
Tssr73231 7 80387171 to 80387205 34 - TSS region transcription start site region 73231
Tssr73232 7 80387364 to 80387381 17 - TSS region transcription start site region 73232
Tssr73233 7 80387383 to 80387394 11 - TSS region transcription start site region 73233
Tssr73234 7 80387408 to 80387426 18 - TSS region transcription start site region 73234
Tssr73235 7 80387871 to 80387901 30 - TSS region transcription start site region 73235
Tssr73236 7 80387904 to 80387922 18 - TSS region transcription start site region 73236
Cpgi19335 7 80387927 to 80388108 181 CpG island CpG island 19335
Tssr73237 7 80387935 to 80387953 18 - TSS region transcription start site region 73237
Tssr67439 7 80387996 to 80388018 22 + TSS region transcription start site region 67439
Tssr67440 7 80388024 to 80388055 31 + TSS region transcription start site region 67440
Tssr73238 7 80388719 to 80388730 11 - TSS region transcription start site region 73238
Furin 7 80389194 to 80405441 16247 - protein coding gene furin (paired basic amino acid cleaving enzyme)
Tssr73239 7 80389816 to 80389827 11 - TSS region transcription start site region 73239
Tssr73240 7 80389859 to 80389912 53 - TSS region transcription start site region 73240
Tssr73241 7 80391223 to 80391243 20 - TSS region transcription start site region 73241
Tssr73242 7 80391562 to 80391576 14 - TSS region transcription start site region 73242
Tssr73243 7 80396961 to 80396978 17 - TSS region transcription start site region 73243
Tssr73244 7 80398767 to 80398791 24 - TSS region transcription start site region 73244
Tssr73245 7 80398873 to 80398898 25 - TSS region transcription start site region 73245
Tssr67441 7 80400385 to 80400399 14 + TSS region transcription start site region 67441
D7Mit90 7 80401024 to 80401283 259 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 90
Tssr67442 7 80401281 to 80401298 17 + TSS region transcription start site region 67442
Tssr73246 7 80401461 to 80401473 12 - TSS region transcription start site region 73246
Tssr73247 7 80401490 to 80401507 17 - TSS region transcription start site region 73247
Tssr73248 7 80401749 to 80401754 5 - TSS region transcription start site region 73248
Cpgi19336 7 80401765 to 80403337 1572 CpG island CpG island 19336
Tssr73249 7 80402230 to 80402262 32 - TSS region transcription start site region 73249
Tssr73250 7 80402708 to 80402731 23 - TSS region transcription start site region 73250
Tssr73251 7 80402743 to 80402757 14 - TSS region transcription start site region 73251
Tssr73252 7 80402770 to 80402823 53 - TSS region transcription start site region 73252
Tssr73253 7 80403304 to 80403309 5 - TSS region transcription start site region 73253
Tssr73254 7 80403315 to 80403339 24 - TSS region transcription start site region 73254
Tssr73255 7 80403370 to 80403378 8 - TSS region transcription start site region 73255
Tssr73256 7 80404029 to 80404041 12 - TSS region transcription start site region 73256
Tssr73257 7 80404056 to 80404064 8 - TSS region transcription start site region 73257
Gm44851 7 80404269 to 80406577 2308 + antisense lncRNA gene predicted gene 44851
Tssr67443 7 80404438 to 80404445 7 + TSS region transcription start site region 67443
Tssr73258 7 80405425 to 80405433 8 - TSS region transcription start site region 73258
Tssr67444 7 80405531 to 80405541 10 + TSS region transcription start site region 67444
Tssr73259 7 80406310 to 80406321 11 - TSS region transcription start site region 73259
Tssr73260 7 80406339 to 80406353 14 - TSS region transcription start site region 73260
Tssr67445 7 80406562 to 80406573 11 + TSS region transcription start site region 67445
Tssr73261 7 80410209 to 80410215 6 - TSS region transcription start site region 73261
Tssr73262 7 80417762 to 80417782 20 - TSS region transcription start site region 73262
Tssr73263 7 80419390 to 80419401 11 - TSS region transcription start site region 73263
Tssr73264 7 80419417 to 80419429 12 - TSS region transcription start site region 73264
Tssr73265 7 80420008 to 80420021 13 - TSS region transcription start site region 73265
Tssr67446 7 80422990 to 80422993 3 + TSS region transcription start site region 67446