Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:78488343-79078367

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntrk3 7 78179986 to 78579180 399194 - protein coding gene neurotrophic tyrosine kinase, receptor, type 3
D7Mit214 7 78556370 to 78556505 135 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 214
Gm39038 7 78560635 to 78575232 14597 - sense intronic lncRNA gene predicted gene, 39038
Cpgi19281 7 78576935 to 78579363 2428 CpG island CpG island 19281
Tssr73073 7 78577771 to 78577828 57 - TSS region transcription start site region 73073
Tssr73074 7 78578134 to 78578154 20 - TSS region transcription start site region 73074
Tssr73075 7 78578308 to 78578400 92 - TSS region transcription start site region 73075
Tssr67299 7 78578557 to 78578586 29 + TSS region transcription start site region 67299
Gm9885 7 78578830 to 78581038 2208 + antisense lncRNA gene predicted gene 9885
Tssr73076 7 78578962 to 78578987 25 - TSS region transcription start site region 73076
E430016F16Rik 7 78581066 to 78718220 137154 - lncRNA gene RIKEN cDNA E430016F16 gene
Tssr73077 7 78623323 to 78623343 20 - TSS region transcription start site region 73077
Tssr73078 7 78627457 to 78627461 4 - TSS region transcription start site region 73078
Tssr73079 7 78628001 to 78628002 1 - TSS region transcription start site region 73079
Cpgi19282 7 78669524 to 78669767 243 CpG island CpG island 19282
D7Mit366 7 78684196 to 78684340 144 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 366
Tssr67300 7 78718378 to 78718400 22 + TSS region transcription start site region 67300
Tssr67301 7 78719368 to 78719379 11 + TSS region transcription start site region 67301
Tssr67302 7 78719422 to 78719449 27 + TSS region transcription start site region 67302
Tssr73080 7 78721331 to 78721336 5 - TSS region transcription start site region 73080
Gm30892 7 78727473 to 78734644 7171 - lncRNA gene predicted gene, 30892
Tssr73081 7 78736102 to 78736106 4 - TSS region transcription start site region 73081
Tssr73082 7 78737228 to 78737232 4 - TSS region transcription start site region 73082
Tssr73083 7 78738003 to 78738029 26 - TSS region transcription start site region 73083
Mrpl46 7 78775341 to 78783089 7748 - protein coding gene mitochondrial ribosomal protein L46
Gm45059 7 78777290 to 78778366 1076 - unclassified gene predicted gene 45059
Cpgi19283 7 78782736 to 78783141 405 CpG island CpG island 19283
Tssr73084 7 78783026 to 78783057 31 - TSS region transcription start site region 73084
Mrps11 7 78783131 to 78792989 9858 + protein coding gene mitochondrial ribosomal protein S11
Tssr2305 7 78783298 to 78783302 4 + TSS region transcription start site region 2305
Tssr67303 7 78783303 to 78783341 38 + TSS region transcription start site region 67303
Tssr67304 7 78783343 to 78783367 24 + TSS region transcription start site region 67304
5330411O13Rik 7 78818285 to 78820663 2378 + lincRNA gene RIKEN cDNA 5330411O13 gene
Det1 7 78822956 to 78847374 24418 - protein coding gene de-etiolated homolog 1 (Arabidopsis)
Tssr73085 7 78835782 to 78835799 17 - TSS region transcription start site region 73085
Cpgi19284 7 78846697 to 78847702 1005 CpG island CpG island 19284
Tssr73086 7 78847206 to 78847255 49 - TSS region transcription start site region 73086
1700011D18Rik 7 78847254 to 78847530 276 + lincRNA gene RIKEN cDNA 1700011D18 gene
Gm44730 7 78855488 to 78858442 2954 - lincRNA gene predicted gene 44730
D7Mit194.1 7 78867707 to 78867849 142 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194.1
D7Mit194 7 78867825 to 78867970 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194
Cpgi19285 7 78882429 to 78883501 1072 CpG island CpG island 19285
Tssr67305 7 78882619 to 78882634 15 + TSS region transcription start site region 67305
Tssr67306 7 78885619 to 78885651 32 + TSS region transcription start site region 67306
Mir7-2 7 78888277 to 78888373 96 + miRNA gene microRNA 7-2
Tssr67307 7 78888356 to 78888359 3 + TSS region transcription start site region 67307
Gm39039 7 78893775 to 78895782 2007 - lncRNA gene predicted gene, 39039
Cpgi19286 7 78895673 to 78896393 720 CpG island CpG island 19286
Tssr73087 7 78895732 to 78895739 7 - TSS region transcription start site region 73087
Tssr67308 7 78895903 to 78895990 87 + TSS region transcription start site region 67308
Aen 7 78895927 to 78908833 12906 + protein coding gene apoptosis enhancing nuclease
Tssr2306 7 78896008 to 78896016 8 + TSS region transcription start site region 2306
D7Ertd783e 7 78903569 to 78903816 247 DNA segment DNA segment, Chr 7, ERATO Doi 783, expressed
Tssr67309 7 78913401 to 78913428 27 + TSS region transcription start site region 67309
Isg20 7 78913424 to 78920396 6972 + protein coding gene interferon-stimulated protein
Tssr67310 7 78913436 to 78913448 12 + TSS region transcription start site region 67310
Tssr67311 7 78913786 to 78913791 5 + TSS region transcription start site region 67311
Tssr67312 7 78913794 to 78913864 70 + TSS region transcription start site region 67312
Tssr73088 7 78913866 to 78913895 29 - TSS region transcription start site region 73088
Tssr67313 7 78913891 to 78913902 11 + TSS region transcription start site region 67313
Tssr67314 7 78913909 to 78913918 9 + TSS region transcription start site region 67314
Tssr67315 7 78913926 to 78913949 23 + TSS region transcription start site region 67315
Tssr67316 7 78913951 to 78913991 40 + TSS region transcription start site region 67316
Tssr67317 7 78914010 to 78914021 11 + TSS region transcription start site region 67317
Tssr67318 7 78914216 to 78914294 78 + TSS region transcription start site region 67318
Tssr67319 7 78914314 to 78914334 20 + TSS region transcription start site region 67319
Tssr67320 7 78914526 to 78914535 9 + TSS region transcription start site region 67320
Tssr67321 7 78916654 to 78916688 34 + TSS region transcription start site region 67321
Tssr67322 7 78920128 to 78920140 12 + TSS region transcription start site region 67322
Tssr67323 7 78920146 to 78920157 11 + TSS region transcription start site region 67323
Tssr67324 7 78920174 to 78920198 24 + TSS region transcription start site region 67324
Tssr67325 7 78920214 to 78920234 20 + TSS region transcription start site region 67325
Gm44815 7 78922254 to 78923886 1632 - unclassified gene predicted gene 44815
Gm31213 7 78938946 to 78954525 15579 - lncRNA gene predicted gene, 31213
D7Mit93 7 78985153 to 78985278 125 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 93
Cpgi19287 7 78990275 to 78990696 421 CpG island CpG island 19287
D7Mit349 7 78999025 to 78999145 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 349
Gm26633 7 79018053 to 79053323 35270 - antisense lncRNA gene predicted gene, 26633
Cpgi19288 7 79052614 to 79053721 1107 CpG island CpG island 19288
Tssr67326 7 79053215 to 79053234 19 + TSS region transcription start site region 67326
Tssr67327 7 79053236 to 79053265 29 + TSS region transcription start site region 67327
Tssr67328 7 79053288 to 79053301 13 + TSS region transcription start site region 67328
Acan 7 79053483 to 79115099 61616 + protein coding gene aggrecan