Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:78242254-79603886

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntrk3 7 78179986 to 78579180 399194 - protein coding gene neurotrophic tyrosine kinase, receptor, type 3
4921513I08Rik 7 78254296 to 78255421 1125 + antisense lncRNA gene RIKEN cDNA 4921513I08 gene
Tssr73071 7 78432596 to 78432600 4 - TSS region transcription start site region 73071
Tssr73072 7 78451705 to 78451707 2 - TSS region transcription start site region 73072
D7Mit214 7 78556370 to 78556505 135 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 214
Gm39038 7 78560635 to 78575232 14597 - sense intronic lncRNA gene predicted gene, 39038
Cpgi19281 7 78576935 to 78579363 2428 CpG island CpG island 19281
Tssr73073 7 78577771 to 78577828 57 - TSS region transcription start site region 73073
Tssr73074 7 78578134 to 78578154 20 - TSS region transcription start site region 73074
Tssr73075 7 78578308 to 78578400 92 - TSS region transcription start site region 73075
Tssr67299 7 78578557 to 78578586 29 + TSS region transcription start site region 67299
Gm9885 7 78578830 to 78581038 2208 + antisense lncRNA gene predicted gene 9885
Tssr73076 7 78578962 to 78578987 25 - TSS region transcription start site region 73076
E430016F16Rik 7 78581066 to 78718220 137154 - lncRNA gene RIKEN cDNA E430016F16 gene
Tssr73077 7 78623323 to 78623343 20 - TSS region transcription start site region 73077
Tssr73078 7 78627457 to 78627461 4 - TSS region transcription start site region 73078
Tssr73079 7 78628001 to 78628002 1 - TSS region transcription start site region 73079
Cpgi19282 7 78669524 to 78669767 243 CpG island CpG island 19282
D7Mit366 7 78684196 to 78684340 144 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 366
Tssr67300 7 78718378 to 78718400 22 + TSS region transcription start site region 67300
Tssr67301 7 78719368 to 78719379 11 + TSS region transcription start site region 67301
Tssr67302 7 78719422 to 78719449 27 + TSS region transcription start site region 67302
Tssr73080 7 78721331 to 78721336 5 - TSS region transcription start site region 73080
Gm30892 7 78727473 to 78734644 7171 - lncRNA gene predicted gene, 30892
Tssr73081 7 78736102 to 78736106 4 - TSS region transcription start site region 73081
Tssr73082 7 78737228 to 78737232 4 - TSS region transcription start site region 73082
Tssr73083 7 78738003 to 78738029 26 - TSS region transcription start site region 73083
Mrpl46 7 78775341 to 78783089 7748 - protein coding gene mitochondrial ribosomal protein L46
Gm45059 7 78777290 to 78778366 1076 - unclassified gene predicted gene 45059
Cpgi19283 7 78782736 to 78783141 405 CpG island CpG island 19283
Tssr73084 7 78783026 to 78783057 31 - TSS region transcription start site region 73084
Mrps11 7 78783131 to 78792989 9858 + protein coding gene mitochondrial ribosomal protein S11
Tssr2305 7 78783298 to 78783302 4 + TSS region transcription start site region 2305
Tssr67303 7 78783303 to 78783341 38 + TSS region transcription start site region 67303
Tssr67304 7 78783343 to 78783367 24 + TSS region transcription start site region 67304
5330411O13Rik 7 78818285 to 78820663 2378 + lincRNA gene RIKEN cDNA 5330411O13 gene
Det1 7 78822956 to 78847374 24418 - protein coding gene de-etiolated homolog 1 (Arabidopsis)
Tssr73085 7 78835782 to 78835799 17 - TSS region transcription start site region 73085
Cpgi19284 7 78846697 to 78847702 1005 CpG island CpG island 19284
Tssr73086 7 78847206 to 78847255 49 - TSS region transcription start site region 73086
1700011D18Rik 7 78847254 to 78847530 276 + lincRNA gene RIKEN cDNA 1700011D18 gene
Gm44730 7 78855488 to 78858442 2954 - lincRNA gene predicted gene 44730
D7Mit194.1 7 78867707 to 78867849 142 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194.1
D7Mit194 7 78867825 to 78867970 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194
Cpgi19285 7 78882429 to 78883501 1072 CpG island CpG island 19285
Tssr67305 7 78882619 to 78882634 15 + TSS region transcription start site region 67305
Tssr67306 7 78885619 to 78885651 32 + TSS region transcription start site region 67306
Mir7-2 7 78888277 to 78888373 96 + miRNA gene microRNA 7-2
Tssr67307 7 78888356 to 78888359 3 + TSS region transcription start site region 67307
Gm39039 7 78893775 to 78895782 2007 - lncRNA gene predicted gene, 39039
Cpgi19286 7 78895673 to 78896393 720 CpG island CpG island 19286
Tssr73087 7 78895732 to 78895739 7 - TSS region transcription start site region 73087
Tssr67308 7 78895903 to 78895990 87 + TSS region transcription start site region 67308
Aen 7 78895927 to 78908833 12906 + protein coding gene apoptosis enhancing nuclease
Tssr2306 7 78896008 to 78896016 8 + TSS region transcription start site region 2306
D7Ertd783e 7 78903569 to 78903816 247 DNA segment DNA segment, Chr 7, ERATO Doi 783, expressed
Tssr67309 7 78913401 to 78913428 27 + TSS region transcription start site region 67309
Isg20 7 78913424 to 78920396 6972 + protein coding gene interferon-stimulated protein
Tssr67310 7 78913436 to 78913448 12 + TSS region transcription start site region 67310
Tssr67311 7 78913786 to 78913791 5 + TSS region transcription start site region 67311
Tssr67312 7 78913794 to 78913864 70 + TSS region transcription start site region 67312
Tssr73088 7 78913866 to 78913895 29 - TSS region transcription start site region 73088
Tssr67313 7 78913891 to 78913902 11 + TSS region transcription start site region 67313
Tssr67314 7 78913909 to 78913918 9 + TSS region transcription start site region 67314
Tssr67315 7 78913926 to 78913949 23 + TSS region transcription start site region 67315
Tssr67316 7 78913951 to 78913991 40 + TSS region transcription start site region 67316
Tssr67317 7 78914010 to 78914021 11 + TSS region transcription start site region 67317
Tssr67318 7 78914216 to 78914294 78 + TSS region transcription start site region 67318
Tssr67319 7 78914314 to 78914334 20 + TSS region transcription start site region 67319
Tssr67320 7 78914526 to 78914535 9 + TSS region transcription start site region 67320
Tssr67321 7 78916654 to 78916688 34 + TSS region transcription start site region 67321
Tssr67322 7 78920128 to 78920140 12 + TSS region transcription start site region 67322
Tssr67323 7 78920146 to 78920157 11 + TSS region transcription start site region 67323
Tssr67324 7 78920174 to 78920198 24 + TSS region transcription start site region 67324
Tssr67325 7 78920214 to 78920234 20 + TSS region transcription start site region 67325
Gm44815 7 78922254 to 78923886 1632 - unclassified gene predicted gene 44815
Gm31213 7 78938946 to 78954525 15579 - lncRNA gene predicted gene, 31213
D7Mit93 7 78985153 to 78985278 125 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 93
Cpgi19287 7 78990275 to 78990696 421 CpG island CpG island 19287
D7Mit349 7 78999025 to 78999145 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 349
Gm26633 7 79018053 to 79053323 35270 - antisense lncRNA gene predicted gene, 26633
Cpgi19288 7 79052614 to 79053721 1107 CpG island CpG island 19288
Tssr67326 7 79053215 to 79053234 19 + TSS region transcription start site region 67326
Tssr67327 7 79053236 to 79053265 29 + TSS region transcription start site region 67327
Tssr67328 7 79053288 to 79053301 13 + TSS region transcription start site region 67328
Acan 7 79053483 to 79115099 61616 + protein coding gene aggrecan
Tssr67329 7 79084525 to 79084538 13 + TSS region transcription start site region 67329
Cpgi19289 7 79089653 to 79089935 282 CpG island CpG island 19289
Hapln3 7 79115102 to 79131018 15916 - protein coding gene hyaluronan and proteoglycan link protein 3
Cpgi19290 7 79130815 to 79131080 265 CpG island CpG island 19290
Mfge8 7 79133768 to 79149060 15292 - protein coding gene milk fat globule-EGF factor 8 protein
Tssr73089 7 79143301 to 79143327 26 - TSS region transcription start site region 73089
Tssr73090 7 79145295 to 79145315 20 - TSS region transcription start site region 73090
Tssr73091 7 79145361 to 79145384 23 - TSS region transcription start site region 73091
Cpgi19291 7 79148597 to 79149257 660 CpG island CpG island 19291
Tssr73092 7 79149015 to 79149029 14 - TSS region transcription start site region 73092
Tssr73093 7 79149042 to 79149062 20 - TSS region transcription start site region 73093
D7Dcr33 7 79214644 to 79214738 94 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 33
Gm39040 7 79243823 to 79247576 3753 - lncRNA gene predicted gene, 39040
Tssr2307 7 79261551 to 79261556 5 + TSS region transcription start site region 2307
Gm31510 7 79271688 to 79273035 1347 - bidirectional promoter lncRNA gene predicted gene, 31510
Cpgi19292 7 79273019 to 79273800 781 CpG island CpG island 19292
Tssr67330 7 79273214 to 79273225 11 + TSS region transcription start site region 67330
Tssr67331 7 79273248 to 79273270 22 + TSS region transcription start site region 67331
Abhd2 7 79273266 to 79361601 88335 + protein coding gene abhydrolase domain containing 2
Tssr67332 7 79273277 to 79273295 18 + TSS region transcription start site region 67332
Gm44639 7 79277767 to 79280775 3008 + unclassified gene predicted gene 44639
Tssr67333 7 79290565 to 79290570 5 + TSS region transcription start site region 67333
Tssr67334 7 79297015 to 79297048 33 + TSS region transcription start site region 67334
Tssr67335 7 79297105 to 79297139 34 + TSS region transcription start site region 67335
Gm39041 7 79298950 to 79302400 3450 + lncRNA gene predicted gene, 39041
Tssr67336 7 79299836 to 79299863 27 + TSS region transcription start site region 67336
Tssr73094 7 79300914 to 79300926 12 - TSS region transcription start site region 73094
Tssr73095 7 79300944 to 79300954 10 - TSS region transcription start site region 73095
Tssr73096 7 79300960 to 79300982 22 - TSS region transcription start site region 73096
Tssr67337 7 79308015 to 79308023 8 + TSS region transcription start site region 67337
Tssr67338 7 79323535 to 79323548 13 + TSS region transcription start site region 67338
Gm24224 7 79352488 to 79352745 257 - unclassified non-coding RNA gene predicted gene, 24224
Tssr67339 7 79360264 to 79360276 12 + TSS region transcription start site region 67339
Tssr67340 7 79361132 to 79361144 12 + TSS region transcription start site region 67340
Tssr67341 7 79363620 to 79363644 24 + TSS region transcription start site region 67341
Tssr67342 7 79364125 to 79364135 10 + TSS region transcription start site region 67342
Tssr67343 7 79364749 to 79364762 13 + TSS region transcription start site region 67343
Tssr67344 7 79365121 to 79365125 4 + TSS region transcription start site region 67344
Rlbp1 7 79374865 to 79387043 12178 - protein coding gene retinaldehyde binding protein 1
D7Mit250 7 79376386 to 79376513 127 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 250
Tssr73097 7 79386707 to 79386762 55 - TSS region transcription start site region 73097
Tssr73098 7 79386785 to 79386796 11 - TSS region transcription start site region 73098
Tssr73099 7 79386841 to 79386867 26 - TSS region transcription start site region 73099
Tssr73100 7 79386906 to 79386930 24 - TSS region transcription start site region 73100
Tssr73101 7 79386943 to 79386981 38 - TSS region transcription start site region 73101
Tssr73102 7 79388033 to 79388059 26 - TSS region transcription start site region 73102
Cpgi19293 7 79391897 to 79392722 825 CpG island CpG island 19293
Tssr67345 7 79392305 to 79392346 41 + TSS region transcription start site region 67345
Fanci 7 79392312 to 79450265 57953 + protein coding gene Fanconi anemia, complementation group I
Gm31653 7 79396496 to 79399128 2632 - lncRNA gene predicted gene, 31653
Tssr67346 7 79398665 to 79398681 16 + TSS region transcription start site region 67346
Tssr67347 7 79399133 to 79399145 12 + TSS region transcription start site region 67347
Gm16017 7 79412310 to 79412517 207 - pseudogene predicted gene 16017
D7Jpk3 7 79433189 to 79433329 140 DNA segment DNA segment, Chr 7, Japan, Kominami 3
Polg 7 79448910 to 79466306 17396 - protein coding gene polymerase (DNA directed), gamma
Cpgi19294 7 79464612 to 79467201 2589 CpG island CpG island 19294
Tssr73103 7 79465502 to 79465512 10 - TSS region transcription start site region 73103
Tssr73104 7 79466012 to 79466028 16 - TSS region transcription start site region 73104
Tssr73105 7 79466127 to 79466136 9 - TSS region transcription start site region 73105
Tssr73106 7 79466167 to 79466240 73 - TSS region transcription start site region 73106
Gm10616 7 79466409 to 79468535 2126 + unclassified gene predicted gene 10616
n-TRtcg5 7 79466419 to 79466491 72 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon TCG)
Tssr73107 7 79477362 to 79477390 28 - TSS region transcription start site region 73107
Cpgi19295 7 79495991 to 79496418 427 CpG island CpG island 19295
Cpgi19296 7 79499072 to 79500565 1493 CpG island CpG island 19296
Tssr67348 7 79499134 to 79499151 17 + TSS region transcription start site region 67348
Tssr67349 7 79499976 to 79499987 11 + TSS region transcription start site region 67349
Tssr67350 7 79500018 to 79500035 17 + TSS region transcription start site region 67350
Mir9-3hg 7 79500026 to 79534403 34377 + lincRNA gene Mir9-3 host gene
Tssr67351 7 79500045 to 79500066 21 + TSS region transcription start site region 67351
Tssr67352 7 79500081 to 79500095 14 + TSS region transcription start site region 67352
Cpgi19297 7 79504439 to 79505707 1268 CpG island CpG island 19297
Tssr73108 7 79504754 to 79504763 9 - TSS region transcription start site region 73108
Tssr67353 7 79504941 to 79504954 13 + TSS region transcription start site region 67353
Mir9-3 7 79505264 to 79505353 89 + miRNA gene microRNA 9-3
Tssr67354 7 79505336 to 79505347 11 + TSS region transcription start site region 67354
Cpgi19298 7 79505907 to 79506235 328 CpG island CpG island 19298
Cpgi19299 7 79508130 to 79509461 1331 CpG island CpG island 19299
A330074H02Rik 7 79510362 to 79511400 1038 + unclassified gene RIKEN cDNA A330074H02 gene
2900037B21Rik 7 79512924 to 79513260 336 + unclassified gene RIKEN cDNA 2900037B21 gene
Cpgi19300 7 79514619 to 79516000 1381 CpG island CpG island 19300
Gm37608 7 79516882 to 79518761 1879 + unclassified gene predicted gene, 37608
Cpgi19301 7 79535289 to 79536662 1373 CpG island CpG island 19301
Gm35040 7 79535737 to 79558537 22800 + lincRNA gene predicted gene, 35040
Tssr67355 7 79535997 to 79536061 64 + TSS region transcription start site region 67355
Tssr67356 7 79536141 to 79536166 25 + TSS region transcription start site region 67356
D7Mit213 7 79539293 to 79539432 139 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 213
Gm31740 7 79542837 to 79550625 7788 - lncRNA gene predicted gene, 31740
Cpgi19302 7 79543023 to 79544462 1439 CpG island CpG island 19302
Cpgi19303 7 79544663 to 79544902 239 CpG island CpG island 19303
Cpgi19304 7 79555734 to 79555962 228 CpG island CpG island 19304
Gm45168 7 79577755 to 79579079 1324 - lincRNA gene predicted gene 45168
Cpgi19305 7 79578057 to 79578227 170 CpG island CpG island 19305
Cpgi19306 7 79578815 to 79579196 381 CpG island CpG island 19306
Gm45169 7 79586648 to 79592613 5965 - lincRNA gene predicted gene 45169
Cpgi19307 7 79592558 to 79592883 325 CpG island CpG island 19307
Rhcg 7 79593363 to 79617657 24294 - protein coding gene Rhesus blood group-associated C glycoprotein
Tssr73109 7 79594991 to 79595009 18 - TSS region transcription start site region 73109
Tssr73110 7 79596559 to 79596569 10 - TSS region transcription start site region 73110
Tssr73111 7 79596684 to 79596698 14 - TSS region transcription start site region 73111
Tssr73112 7 79596880 to 79596892 12 - TSS region transcription start site region 73112
Gm45170 7 79602006 to 79603676 1670 - unclassified gene predicted gene 45170
Idd27 7 119886157 to 79376386 -40509771 QTL insulin dependent diabetes susceptibility 27