Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:77551610-78872699

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbthq2 7 66010000 to 77900000 11890000 QTL trabecular bone thickness QTL 2
D7Dcr32 7 77634337 to 77634437 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 32
Gm18674 7 77776032 to 77776777 745 + pseudogene predicted gene, 18674
Gm23239 7 77910140 to 77910320 180 - snRNA gene predicted gene, 23239
Tssr67297 7 78019129 to 78019134 5 + TSS region transcription start site region 67297
Gm44358 7 78026543 to 78026640 97 - miRNA gene predicted gene, 44358
Tssr67298 7 78077617 to 78077618 1 + TSS region transcription start site region 67298
Gm46012 7 78161949 to 78165423 3474 - pseudogene predicted gene, 46012
A330068G13Rik 7 78175969 to 78179265 3296 unclassified non-coding RNA gene RIKEN cDNA A330068G13 gene
Ntrk3 7 78179986 to 78579180 399194 - protein coding gene neurotrophic tyrosine kinase, receptor, type 3
Tssr73069 7 78192530 to 78192550 20 - TSS region transcription start site region 73069
Tssr73070 7 78192565 to 78192577 12 - TSS region transcription start site region 73070
Gm44607 7 78211610 to 78212699 1089 - unclassified gene predicted gene 44607
4921513I08Rik 7 78254296 to 78255421 1125 + antisense lncRNA gene RIKEN cDNA 4921513I08 gene
Tssr73071 7 78432596 to 78432600 4 - TSS region transcription start site region 73071
Tssr73072 7 78451705 to 78451707 2 - TSS region transcription start site region 73072
D7Mit214 7 78556370 to 78556505 135 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 214
Gm39038 7 78560635 to 78575232 14597 - sense intronic lncRNA gene predicted gene, 39038
Cpgi19281 7 78576935 to 78579363 2428 CpG island CpG island 19281
Tssr73073 7 78577771 to 78577828 57 - TSS region transcription start site region 73073
Tssr73074 7 78578134 to 78578154 20 - TSS region transcription start site region 73074
Tssr73075 7 78578308 to 78578400 92 - TSS region transcription start site region 73075
Tssr67299 7 78578557 to 78578586 29 + TSS region transcription start site region 67299
Gm9885 7 78578830 to 78581038 2208 + antisense lncRNA gene predicted gene 9885
Tssr73076 7 78578962 to 78578987 25 - TSS region transcription start site region 73076
E430016F16Rik 7 78581066 to 78718220 137154 - lncRNA gene RIKEN cDNA E430016F16 gene
Tssr73077 7 78623323 to 78623343 20 - TSS region transcription start site region 73077
Tssr73078 7 78627457 to 78627461 4 - TSS region transcription start site region 73078
Tssr73079 7 78628001 to 78628002 1 - TSS region transcription start site region 73079
Cpgi19282 7 78669524 to 78669767 243 CpG island CpG island 19282
D7Mit366 7 78684196 to 78684340 144 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 366
Tssr67300 7 78718378 to 78718400 22 + TSS region transcription start site region 67300
Tssr67301 7 78719368 to 78719379 11 + TSS region transcription start site region 67301
Tssr67302 7 78719422 to 78719449 27 + TSS region transcription start site region 67302
Tssr73080 7 78721331 to 78721336 5 - TSS region transcription start site region 73080
Gm30892 7 78727473 to 78734644 7171 - lncRNA gene predicted gene, 30892
Tssr73081 7 78736102 to 78736106 4 - TSS region transcription start site region 73081
Tssr73082 7 78737228 to 78737232 4 - TSS region transcription start site region 73082
Tssr73083 7 78738003 to 78738029 26 - TSS region transcription start site region 73083
Mrpl46 7 78775341 to 78783089 7748 - protein coding gene mitochondrial ribosomal protein L46
Gm45059 7 78777290 to 78778366 1076 - unclassified gene predicted gene 45059
Cpgi19283 7 78782736 to 78783141 405 CpG island CpG island 19283
Tssr73084 7 78783026 to 78783057 31 - TSS region transcription start site region 73084
Mrps11 7 78783131 to 78792989 9858 + protein coding gene mitochondrial ribosomal protein S11
Tssr2305 7 78783298 to 78783302 4 + TSS region transcription start site region 2305
Tssr67303 7 78783303 to 78783341 38 + TSS region transcription start site region 67303
Tssr67304 7 78783343 to 78783367 24 + TSS region transcription start site region 67304
5330411O13Rik 7 78818285 to 78820663 2378 + lincRNA gene RIKEN cDNA 5330411O13 gene
Det1 7 78822956 to 78847374 24418 - protein coding gene de-etiolated homolog 1 (Arabidopsis)
Tssr73085 7 78835782 to 78835799 17 - TSS region transcription start site region 73085
Cpgi19284 7 78846697 to 78847702 1005 CpG island CpG island 19284
Tssr73086 7 78847206 to 78847255 49 - TSS region transcription start site region 73086
1700011D18Rik 7 78847254 to 78847530 276 + lincRNA gene RIKEN cDNA 1700011D18 gene
Gm44730 7 78855488 to 78858442 2954 - lincRNA gene predicted gene 44730
D7Mit194.1 7 78867707 to 78867849 142 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194.1
D7Mit194 7 78867825 to 78867970 145 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 194