Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:7054796-11117765

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pafah1b1-ps2 7 7061859 to 7063452 1593 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 2
Gm6828 7 7096843 to 7098028 1185 - pseudogene predicted gene 6828
Gm3530 7 7101217 to 7104033 2816 - pseudogene predicted gene 3530
Gm44583 7 7106975 to 7107910 935 + pseudogene predicted gene 44583
Zfp954 7 7114683 to 7121476 6793 - protein coding gene zinc finger protein 954
Cpgi18304 7 7121004 to 7121600 596 CpG island CpG island 18304
Tssr70608 7 7121433 to 7121469 36 - TSS region transcription start site region 70608
Tssr70609 7 7121481 to 7121485 4 - TSS region transcription start site region 70609
Gm44697 7 7122160 to 7123838 1678 + unclassified gene predicted gene 44697
Zfp773 7 7130678 to 7136755 6077 - protein coding gene zinc finger protein 773
Vmn2r-ps35 7 7153726 to 7154523 797 - pseudogene vomeronasal 2, receptor, pseudogene 35
Cpgi18305 7 7171332 to 7171698 366 CpG island CpG island 18305
Tssr64462 7 7171346 to 7171373 27 + TSS region transcription start site region 64462
Zfp418 7 7171353 to 7183560 12207 + protein coding gene zinc finger protein 418
Tssr64463 7 7185664 to 7185665 1 + TSS region transcription start site region 64463
Zfp772 7 7202122 to 7209998 7876 - protein coding gene zinc finger protein 772
Gm45844 7 7213017 to 7278289 65272 - protein coding gene predicted gene 45844
Vmn2r29 7 7231327 to 7247328 16001 - protein coding gene vomeronasal 2, receptor 29
Gm18190 7 7265501 to 7266081 580 - pseudogene predicted gene, 18190
Cpgi18306 7 7277728 to 7278553 825 CpG island CpG island 18306
Tssr64464 7 7277989 to 7278000 11 + TSS region transcription start site region 64464
Tssr70610 7 7278029 to 7278045 16 - TSS region transcription start site region 70610
Tssr70611 7 7278070 to 7278086 16 - TSS region transcription start site region 70611
Clcn4 7 7282309 to 7300851 18542 - protein coding gene chloride channel, voltage-sensitive 4
Cpgi18307 7 7294768 to 7294962 194 CpG island CpG island 18307
Gm45631 7 7295766 to 7297137 1371 + antisense lncRNA gene predicted gene 45631
Cpgi18308 7 7295836 to 7297266 1430 CpG island CpG island 18308
Cpgi18309 7 7297957 to 7300159 2202 CpG island CpG island 18309
Tssr70612 7 7298386 to 7298456 70 - TSS region transcription start site region 70612
Tssr70613 7 7298738 to 7298749 11 - TSS region transcription start site region 70613
Tssr70614 7 7298761 to 7298790 29 - TSS region transcription start site region 70614
Tssr64465 7 7298829 to 7298849 20 + TSS region transcription start site region 64465
Mir5620 7 7298891 to 7298946 55 + miRNA gene microRNA 5620
Tssr64466 7 7299061 to 7299075 14 + TSS region transcription start site region 64466
Tssr70615 7 7299470 to 7299486 16 - TSS region transcription start site region 70615
Tssr70616 7 7299492 to 7299540 48 - TSS region transcription start site region 70616
Cpgi18310 7 7300450 to 7300917 467 CpG island CpG island 18310
Gm45415 7 7311309 to 7313382 2073 + unclassified gene predicted gene 45415
Vmn2r30 7 7312069 to 7337493 25424 - protein coding gene vomeronasal 2, receptor 30
Gm45783 7 7334149 to 7374573 40424 - protein coding gene predicted gene 45783
Gm3912 7 7362898 to 7374624 11726 - pseudogene predicted gene 3912
Vmn2r31 7 7383985 to 7399627 15642 - protein coding gene vomeronasal 2, receptor 31
Vmn2r-ps36 7 7417670 to 7441299 23629 - pseudogene vomeronasal 2, receptor, pseudogene 36
Vmn2r32 7 7463969 to 7479973 16004 - protein coding gene vomeronasal 2, receptor 32
Gm3563 7 7493963 to 7506878 12915 - pseudogene predicted gene 3563
Gm6842 7 7534575 to 7534964 389 - pseudogene predicted gene 6842
Vmn2r33 7 7550967 to 7566786 15819 - protein coding gene vomeronasal 2, receptor 33
Gm7648 7 7585304 to 7596433 11129 - pseudogene predicted gene 7648
Gm7651 7 7608627 to 7614771 6144 - pseudogene predicted gene 7651
Vmn2r-ps37 7 7642172 to 7645360 3188 - pseudogene vomeronasal 2, receptor, pseudogene 37
Vmn2r34 7 7671829 to 7689398 17569 - protein coding gene vomeronasal 2, receptor 34
Vmn2r-ps38 7 7706858 to 7720205 13347 - pseudogene vomeronasal 2, receptor, pseudogene 38
Vmn2r-ps39 7 7754979 to 7756125 1146 - pseudogene vomeronasal 2, receptor, pseudogene 39
Vmn2r35 7 7786151 to 7819867 33716 - protein coding gene vomeronasal 2, receptor 35
Vmn2r-ps40 7 7842899 to 7858604 15705 - pseudogene vomeronasal 2, receptor, pseudogene 40
Vmn2r36 7 7876653 to 7902462 25809 - protein coding gene vomeronasal 2, receptor 36
Gm7230 7 7914685 to 7917327 2642 - pseudogene predicted gene 7230
Gm3978 7 7948288 to 7961572 13284 - pseudogene predicted gene 3978
Gm20438 7 7975628 to 7978155 2527 - pseudogene predicted gene 20438
Gm18200 7 7982515 to 7984350 1835 - pseudogene predicted gene, 18200
Gm42370 7 7984604 to 7986453 1849 - lncRNA gene predicted gene, 42370
Gm4073 7 8010339 to 8035143 24804 - pseudogene predicted gene 4073
Gm3675 7 8035859 to 8055842 19983 - pseudogene predicted gene 3675
2810047C21Rik1 7 8086326 to 8093041 6715 - lincRNA gene RIKEN cDNA 2810047C21 gene 1
Gm3665 7 8102368 to 8112971 10603 - pseudogene predicted gene 3665
Vmn2r41 7 8137905 to 8161551 23646 - protein coding gene vomeronasal 2, receptor 41
Vmn2r42 7 8183265 to 8200320 17055 - protein coding gene vomeronasal 2, receptor 42
Vmn2r43 7 8244348 to 8260599 16251 - protein coding gene vomeronasal 2, receptor 43
Gm3654 7 8282127 to 8289104 6977 - pseudogene predicted gene 3654
Vmn2r-ps45 7 8304226 to 8325804 21578 - pseudogene vomeronasal 2, receptor, pseudogene 45
Gm7696 7 8351076 to 8353704 2628 - pseudogene predicted gene 7696
Vmn2r44 7 8367460 to 8383238 15778 - protein coding gene vomeronasal 2, receptor 44
Vmn2r-ps46 7 8399202 to 8422775 23573 - pseudogene vomeronasal 2, receptor, pseudogene 46
Gm7704 7 8434981 to 8437646 2665 - pseudogene predicted gene 7704
Vmn2r45 7 8471469 to 8488959 17490 - protein coding gene vomeronasal 2, receptor 45
Vmn2r-ps47 7 8506486 to 8519810 13324 - pseudogene vomeronasal 2, receptor, pseudogene 47
Vmn2r-ps48 7 8554565 to 8555711 1146 - pseudogene vomeronasal 2, receptor, pseudogene 48
Vmn2r-ps49 7 8585951 to 8589171 3220 - pseudogene vomeronasal 2, receptor, pseudogene 49
Gm3584 7 8633549 to 8649266 15717 - pseudogene predicted gene 3584
Gm3956 7 8672191 to 8693097 20906 - pseudogene predicted gene 3956
Gm3585 7 8705323 to 8707136 1813 - pseudogene predicted gene 3585
Gm3962 7 8738846 to 8752118 13272 - pseudogene predicted gene 3962
Gm18191 7 8773330 to 8775165 1835 - pseudogene predicted gene, 18191
Vmn2r-ps44 7 8801141 to 8825685 24544 - pseudogene vomeronasal 2, receptor, pseudogene 44
Gm48598 7 8848146 to 8850615 2469 - pseudogene predicted gene, 48598
Gm20482 7 8855847 to 8862851 7004 - pseudogene predicted gene 20482
Vmn2r-ps43 7 8872180 to 8885651 13471 - pseudogene vomeronasal 2, receptor, pseudogene 43
Vmn2r40 7 8907734 to 8931402 23668 - protein coding gene vomeronasal 2, receptor 40
Gm45530 7 8943730 to 8943954 224 - pseudogene predicted gene 45530
Vmn2r-ps42 7 8954489 to 8969976 15487 - pseudogene vomeronasal 2, receptor, pseudogene 42
Vmn2r39 7 9014750 to 9030682 15932 - protein coding gene vomeronasal 2, receptor 39
Zfp419 7 9058365 to 9062173 3808 - pseudogene zinc finger protein 419
Vmn2r38 7 9074796 to 9097765 22969 - protein coding gene vomeronasal 2, receptor 38
Gm5583 7 9118044 to 9131037 12993 - pseudogene predicted gene 5583
Gm18201 7 9143252 to 9145058 1806 - pseudogene predicted gene, 18201
Vmn2r-ps41 7 9176976 to 9180099 3123 - pseudogene vomeronasal 2, receptor, pseudogene 41
Vmn2r37 7 9205549 to 9223653 18104 - protein coding gene vomeronasal 2, receptor 37
Gm4011 7 9241087 to 9260423 19336 - pseudogene predicted gene 4011
Gm3623 7 9326024 to 9347708 21684 - pseudogene predicted gene 3623
Gm3616 7 9373548 to 9386428 12880 - pseudogene predicted gene 3616
Gm20287 7 9407313 to 9432927 25614 - pseudogene predicted gene, 20287
Gm3611 7 9445144 to 9447779 2635 - pseudogene predicted gene 3611
Gm3972 7 9478689 to 9498685 19996 - pseudogene predicted gene 3972
Gm18199 7 9519907 to 9521742 1835 - pseudogene predicted gene, 18199
Gm10302 7 9547711 to 9572254 24543 - pseudogene predicted gene 10302
Gm3683 7 9642621 to 9655501 12880 - pseudogene predicted gene 3683
Gm20345 7 9676386 to 9701998 25612 - pseudogene predicted gene, 20345
Gm3690 7 9714224 to 9714485 261 - pseudogene predicted gene 3690
Vmn2r-ps50 7 9747811 to 9747930 119 - pseudogene vomeronasal 2, receptor, pseudogene 50
Vmn2r46 7 9754636 to 9770571 15935 - protein coding gene vomeronasal 2, receptor 46
Gm18192 7 9788978 to 9790813 1835 - pseudogene predicted gene, 18192
Gm30482 7 9791067 to 9793047 1980 - lncRNA gene predicted gene, 30482
Vmn2r47 7 9816782 to 9841325 24543 - protein coding gene vomeronasal 2, receptor 47
Gm45351 7 9869968 to 9876963 6995 - lincRNA gene predicted gene 45351
Vmn2r-ps51 7 9886278 to 9899743 13465 - pseudogene vomeronasal 2, receptor, pseudogene 51
Vmn2r-ps52 7 9918252 to 9918863 611 - pseudogene vomeronasal 2, receptor, pseudogene 52
Gm45403 7 9918868 to 9919143 275 + pseudogene predicted gene 45403
Gm5888 7 9919307 to 9920301 994 - pseudogene predicted gene 5888
Vmn2r48 7 9927624 to 9953585 25961 - protein coding gene vomeronasal 2, receptor 48
Gm3702 7 9965888 to 9966233 345 - pseudogene predicted gene 3702
Vmn2r49 7 9976245 to 9992139 15894 - protein coding gene vomeronasal 2, receptor 49
Vmn2r50 7 10037235 to 10053178 15943 - protein coding gene vomeronasal 2, receptor 50
Gm6850 7 10074095 to 10075043 948 - pseudogene predicted gene 6850
Vmn2r51 7 10087198 to 10105659 18461 - protein coding gene vomeronasal 2, receptor 51
Vmn2r52 7 10158652 to 10176286 17634 - protein coding gene vomeronasal 2, receptor 52
Gm20679 7 10194461 to 10205677 11216 - pseudogene predicted gene 20679
Vmn1r66 7 10273828 to 10275351 1523 - protein coding gene vomeronasal 1 receptor 66
Vmn1r-ps47 7 10280797 to 10281703 906 - pseudogene vomeronasal 1 receptor, pseudogene 47
Vmn1r-ps48 7 10300490 to 10301375 885 + pseudogene vomeronasal 1 receptor, pseudogene 48
Gm45402 7 10326266 to 10326488 222 - pseudogene predicted gene 45402
Gm45400 7 10344746 to 10351671 6925 + pseudogene predicted gene 45400
Gm45401 7 10355450 to 10356182 732 - pseudogene predicted gene 45401
Nlrp4d 7 10358873 to 10388935 30062 - protein coding gene NLR family, pyrin domain containing 4D
Gm3726 7 10410671 to 10414466 3795 - pseudogene predicted gene 3726
D7Mit306 7 10411588 to 10411701 113 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 306
Vmn1r67 7 10446789 to 10447787 998 + protein coding gene vomeronasal 1 receptor 67
Gm30645 7 10468632 to 10471316 2684 - pseudogene predicted gene, 30645
469O12.R 7 10469089 to 10469336 247 DNA segment DNA segment, 469O12.R
Zik1 7 10487224 to 10495381 8157 - protein coding gene zinc finger protein interacting with K protein 1
Cpgi18311 7 10495028 to 10495595 567 CpG island CpG island 18311
Tssr70617 7 10495322 to 10495401 79 - TSS region transcription start site region 70617
Gm18193 7 10498013 to 10498755 742 - pseudogene predicted gene, 18193
Vmn1r68 7 10527210 to 10528169 959 - protein coding gene vomeronasal 1 receptor 68
Tssr2078 7 10536717 to 10536719 2 + TSS region transcription start site region 2078
Vmn1r-ps49 7 10549557 to 10550435 878 - pseudogene vomeronasal 1 receptor, pseudogene 49
Vmn1r69 7 10579756 to 10581487 1731 - protein coding gene vomeronasal 1 receptor 69
Vmn1r-ps50 7 10604744 to 10605196 452 - pseudogene vomeronasal 1 receptor, pseudogene 50
Vmn1r70 7 10633587 to 10634483 896 + protein coding gene vomeronasal 1 receptor 70
Tssr64467 7 10636801 to 10636804 3 + TSS region transcription start site region 64467
Vmn1r-ps51 7 10650299 to 10650618 319 + pseudogene vomeronasal 1 receptor, pseudogene 51
Gm6900 7 10656479 to 10656820 341 - pseudogene predicted gene 6900
Tssr70618 7 10656968 to 10656977 9 - TSS region transcription start site region 70618
Vmn1r-ps52 7 10666777 to 10667627 850 - pseudogene vomeronasal 1 receptor, pseudogene 52
Tssr64468 7 10687791 to 10687792 1 + TSS region transcription start site region 64468
Nlrp4b 7 10687793 to 10730168 42375 + protein coding gene NLR family, pyrin domain containing 4B
D7Ertd595e 7 10716210 to 10716413 203 DNA segment DNA segment, Chr 7, ERATO Doi 595, expressed
Gm45379 7 10716314 to 10716862 548 + sense intronic lncRNA gene predicted gene 45379
Gm5130 7 10745268 to 10746226 958 + pseudogene predicted gene 5130
Vmn1r71 7 10747502 to 10749538 2036 - protein coding gene vomeronasal 1 receptor 71
Gm45438 7 10780155 to 10780718 563 - pseudogene predicted gene 45438
Zscan4a 7 10794242 to 10799057 4815 - pseudogene zinc finger and SCAN domain containing 4A
Gm18781 7 10805245 to 10806168 923 + pseudogene predicted gene, 18781
Gm7203 7 10810865 to 10821006 10141 + pseudogene predicted gene 7203
Gm4903 7 10845737 to 10846141 404 - pseudogene predicted gene 4903
Gm7836 7 10850763 to 10851194 431 - pseudogene predicted gene 7836
Gm18638 7 10881188 to 10882413 1225 - pseudogene predicted gene, 18638
Zscan4b 7 10900740 to 10905050 4310 - protein coding gene zinc finger and SCAN domain containing 4B
Gm45279 7 10908911 to 10909301 390 + pseudogene predicted gene 45279
Mir297-1 7 10958437 to 10958512 75 - miRNA gene microRNA 297-1
Gm7786 7 10975368 to 10975803 435 + pseudogene predicted gene 7786
Gm7789 7 10988507 to 10995982 7475 - pseudogene predicted pseudogene 7789
Gm18122 7 11001101 to 11001941 840 - pseudogene predicted gene, 18122
Zscan4c 7 11005745 to 11010547 4802 + protein coding gene zinc finger and SCAN domain containing 4C
Gm45327 7 11020329 to 11020893 564 + pseudogene predicted gene 45327
Gm45395 7 11047284 to 11047842 558 - pseudogene predicted gene 45395
Zscan4-ps1 7 11065139 to 11069691 4552 - pseudogene zinc finger and SCAN domain containing 4, pseudogene 1
Gm33601 7 11075671 to 11076631 960 + pseudogene predicted gene, 33601
Gm7151 7 11082883 to 11089602 6719 + pseudogene predicted gene 7151
Gm4157 7 11107677 to 11108355 678 - pseudogene predicted gene 4157
Gm3774 7 11112954 to 11113388 434 - pseudogene predicted gene 3774