Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:6754575-8314964

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp29 7 6730578 to 6967219 236641 + protein coding gene ubiquitin specific peptidase 29
Tssr2076 7 6774844 to 6774845 1 + TSS region transcription start site region 2076
Mir3099 7 6803587 to 6803670 83 + miRNA gene microRNA 3099
Gm44585 7 6805851 to 6806457 606 + unclassified gene predicted gene 44585
Gm44584 7 6809001 to 6811880 2879 + unclassified gene predicted gene 44584
Tssr64458 7 6813773 to 6813775 2 + TSS region transcription start site region 64458
Gm22649 7 6839824 to 6840121 297 - unclassified non-coding RNA gene predicted gene, 22649
Cpgi18302 7 6874465 to 6874658 193 CpG island CpG island 18302
Gm44586 7 6891038 to 6893774 2736 + unclassified gene predicted gene 44586
Tssr64459 7 6894248 to 6894251 3 + TSS region transcription start site region 64459
Gm44587 7 6900352 to 6902036 1684 + unclassified gene predicted gene 44587
Tssr2077 7 6952213 to 6952221 8 + TSS region transcription start site region 2077
Zim3 7 6955685 to 6976662 20977 - antisense lncRNA gene zinc finger, imprinted 3
Cpgi18303 7 6977059 to 6977453 394 CpG island CpG island 18303
Tssr64460 7 6977073 to 6977108 35 + TSS region transcription start site region 64460
Zfp264 7 6977246 to 6991087 13841 + pseudogene zinc finger protein 264
Aurkc 7 6995300 to 7003091 7791 + protein coding gene aurora kinase C
Tssr64461 7 6995486 to 6995498 12 + TSS region transcription start site region 64461
Pafah1b1-ps2 7 7061859 to 7063452 1593 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 2
Gm6828 7 7096843 to 7098028 1185 - pseudogene predicted gene 6828
Gm3530 7 7101217 to 7104033 2816 - pseudogene predicted gene 3530
Gm44583 7 7106975 to 7107910 935 + pseudogene predicted gene 44583
Zfp954 7 7114683 to 7121476 6793 - protein coding gene zinc finger protein 954
Cpgi18304 7 7121004 to 7121600 596 CpG island CpG island 18304
Tssr70608 7 7121433 to 7121469 36 - TSS region transcription start site region 70608
Tssr70609 7 7121481 to 7121485 4 - TSS region transcription start site region 70609
Gm44697 7 7122160 to 7123838 1678 + unclassified gene predicted gene 44697
Zfp773 7 7130678 to 7136755 6077 - protein coding gene zinc finger protein 773
Vmn2r-ps35 7 7153726 to 7154523 797 - pseudogene vomeronasal 2, receptor, pseudogene 35
Cpgi18305 7 7171332 to 7171698 366 CpG island CpG island 18305
Tssr64462 7 7171346 to 7171373 27 + TSS region transcription start site region 64462
Zfp418 7 7171353 to 7183560 12207 + protein coding gene zinc finger protein 418
Tssr64463 7 7185664 to 7185665 1 + TSS region transcription start site region 64463
Zfp772 7 7202122 to 7209998 7876 - protein coding gene zinc finger protein 772
Gm45844 7 7213017 to 7278289 65272 - protein coding gene predicted gene 45844
Vmn2r29 7 7231327 to 7247328 16001 - protein coding gene vomeronasal 2, receptor 29
Gm18190 7 7265501 to 7266081 580 - pseudogene predicted gene, 18190
Cpgi18306 7 7277728 to 7278553 825 CpG island CpG island 18306
Tssr64464 7 7277989 to 7278000 11 + TSS region transcription start site region 64464
Tssr70610 7 7278029 to 7278045 16 - TSS region transcription start site region 70610
Tssr70611 7 7278070 to 7278086 16 - TSS region transcription start site region 70611
Clcn4 7 7282309 to 7300851 18542 - protein coding gene chloride channel, voltage-sensitive 4
Cpgi18307 7 7294768 to 7294962 194 CpG island CpG island 18307
Gm45631 7 7295766 to 7297137 1371 + antisense lncRNA gene predicted gene 45631
Cpgi18308 7 7295836 to 7297266 1430 CpG island CpG island 18308
Cpgi18309 7 7297957 to 7300159 2202 CpG island CpG island 18309
Tssr70612 7 7298386 to 7298456 70 - TSS region transcription start site region 70612
Tssr70613 7 7298738 to 7298749 11 - TSS region transcription start site region 70613
Tssr70614 7 7298761 to 7298790 29 - TSS region transcription start site region 70614
Tssr64465 7 7298829 to 7298849 20 + TSS region transcription start site region 64465
Mir5620 7 7298891 to 7298946 55 + miRNA gene microRNA 5620
Tssr64466 7 7299061 to 7299075 14 + TSS region transcription start site region 64466
Tssr70615 7 7299470 to 7299486 16 - TSS region transcription start site region 70615
Tssr70616 7 7299492 to 7299540 48 - TSS region transcription start site region 70616
Cpgi18310 7 7300450 to 7300917 467 CpG island CpG island 18310
Gm45415 7 7311309 to 7313382 2073 + unclassified gene predicted gene 45415
Vmn2r30 7 7312069 to 7337493 25424 - protein coding gene vomeronasal 2, receptor 30
Gm45783 7 7334149 to 7374573 40424 - protein coding gene predicted gene 45783
Gm3912 7 7362898 to 7374624 11726 - pseudogene predicted gene 3912
Vmn2r31 7 7383985 to 7399627 15642 - protein coding gene vomeronasal 2, receptor 31
Vmn2r-ps36 7 7417670 to 7441299 23629 - pseudogene vomeronasal 2, receptor, pseudogene 36
Vmn2r32 7 7463969 to 7479973 16004 - protein coding gene vomeronasal 2, receptor 32
Gm3563 7 7493963 to 7506878 12915 - pseudogene predicted gene 3563
Gm6842 7 7534575 to 7534964 389 - pseudogene predicted gene 6842
Vmn2r33 7 7550967 to 7566786 15819 - protein coding gene vomeronasal 2, receptor 33
Gm7648 7 7585304 to 7596433 11129 - pseudogene predicted gene 7648
Gm7651 7 7608627 to 7614771 6144 - pseudogene predicted gene 7651
Vmn2r-ps37 7 7642172 to 7645360 3188 - pseudogene vomeronasal 2, receptor, pseudogene 37
Vmn2r34 7 7671829 to 7689398 17569 - protein coding gene vomeronasal 2, receptor 34
Vmn2r-ps38 7 7706858 to 7720205 13347 - pseudogene vomeronasal 2, receptor, pseudogene 38
Vmn2r-ps39 7 7754979 to 7756125 1146 - pseudogene vomeronasal 2, receptor, pseudogene 39
Vmn2r35 7 7786151 to 7819867 33716 - protein coding gene vomeronasal 2, receptor 35
Vmn2r-ps40 7 7842899 to 7858604 15705 - pseudogene vomeronasal 2, receptor, pseudogene 40
Vmn2r36 7 7876653 to 7902462 25809 - protein coding gene vomeronasal 2, receptor 36
Gm7230 7 7914685 to 7917327 2642 - pseudogene predicted gene 7230
Gm3978 7 7948288 to 7961572 13284 - pseudogene predicted gene 3978
Gm20438 7 7975628 to 7978155 2527 - pseudogene predicted gene 20438
Gm18200 7 7982515 to 7984350 1835 - pseudogene predicted gene, 18200
Gm42370 7 7984604 to 7986453 1849 - lncRNA gene predicted gene, 42370
Gm4073 7 8010339 to 8035143 24804 - pseudogene predicted gene 4073
Gm3675 7 8035859 to 8055842 19983 - pseudogene predicted gene 3675
2810047C21Rik1 7 8086326 to 8093041 6715 - lincRNA gene RIKEN cDNA 2810047C21 gene 1
Gm3665 7 8102368 to 8112971 10603 - pseudogene predicted gene 3665
Vmn2r41 7 8137905 to 8161551 23646 - protein coding gene vomeronasal 2, receptor 41
Vmn2r42 7 8183265 to 8200320 17055 - protein coding gene vomeronasal 2, receptor 42
Vmn2r43 7 8244348 to 8260599 16251 - protein coding gene vomeronasal 2, receptor 43
Gm3654 7 8282127 to 8289104 6977 - pseudogene predicted gene 3654
Vmn2r-ps45 7 8304226 to 8325804 21578 - pseudogene vomeronasal 2, receptor, pseudogene 45