Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:66147843-68018749

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chsy1 7 66109515 to 66173798 64283 + protein coding gene chondroitin sulfate synthase 1
Gm26827 7 66109515 to 66173121 63606 - antisense lncRNA gene predicted gene, 26827
Tssr67061 7 66172901 to 66172917 16 + TSS region transcription start site region 67061
Tssr67062 7 66174738 to 66174739 1 + TSS region transcription start site region 67062
Tssr67063 7 66176508 to 66176540 32 + TSS region transcription start site region 67063
Gm45080 7 66190555 to 66190837 282 + pseudogene predicted gene 45080
Tssr67064 7 66196138 to 66196177 39 + TSS region transcription start site region 67064
Gm33442 7 66254771 to 66277801 23030 + lncRNA gene predicted gene, 33442
Lrrk1 7 66258745 to 66388341 129596 - protein coding gene leucine-rich repeat kinase 1
Hfhl3 7 66281288 to 66281288 0 QTL high-frequency hearing loss 3
Gm45989 7 66281726 to 66287433 5707 + lncRNA gene predicted gene, 45989
Gm44752 7 66309195 to 66312499 3304 + antisense lncRNA gene predicted gene 44752
Tssr67065 7 66324527 to 66324531 4 + TSS region transcription start site region 67065
Tssr72816 7 66332538 to 66332554 16 - TSS region transcription start site region 72816
Tssr72817 7 66337139 to 66337175 36 - TSS region transcription start site region 72817
Tssr72818 7 66337615 to 66337655 40 - TSS region transcription start site region 72818
D7Dcr28 7 66340062 to 66340165 103 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 28
Gm10974 7 66365905 to 66386309 20404 + protein coding gene predicted gene 10974
Gm23957 7 66370392 to 66370481 89 - rRNA gene predicted gene, 23957
Tssr72819 7 66377213 to 66377252 39 - TSS region transcription start site region 72819
Tssr72820 7 66378039 to 66378042 3 - TSS region transcription start site region 72820
Mir7057 7 66381667 to 66381724 57 - miRNA gene microRNA 7057
Cpgi19220 7 66387507 to 66388587 1080 CpG island CpG island 19220
Tssr72821 7 66388286 to 66388341 55 - TSS region transcription start site region 72821
Aldh1a3 7 66390892 to 66427477 36585 - protein coding gene aldehyde dehydrogenase family 1, subfamily A3
Cpgi19221 7 66427024 to 66428188 1164 CpG island CpG island 19221
Tssr72822 7 66427469 to 66427483 14 - TSS region transcription start site region 72822
Gm33515 7 66428647 to 66430494 1847 + lncRNA gene predicted gene, 33515
Gm44753 7 66441598 to 66444250 2652 + lincRNA gene predicted gene 44753
Tabw 7 66543530 to 66543642 112 QTL TallyHo associated body weight
D7Mit231 7 66543530 to 66543642 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 231
Gm44754 7 66565226 to 66565625 399 - pseudogene predicted gene 44754
Gm33570 7 66581857 to 66585518 3661 + lincRNA gene predicted gene, 33570
Gm44610 7 66615322 to 66619148 3826 - unclassified gene predicted gene 44610
Asb7 7 66644565 to 66689596 45031 - protein coding gene ankyrin repeat and SOCS box-containing 7
Tssr72823 7 66684294 to 66684299 5 - TSS region transcription start site region 72823
Tssr72824 7 66689474 to 66689491 17 - TSS region transcription start site region 72824
Tssr72825 7 66689500 to 66689525 25 - TSS region transcription start site region 72825
Tssr72826 7 66689551 to 66689569 18 - TSS region transcription start site region 72826
Cpgi19222 7 66689588 to 66690390 802 CpG island CpG island 19222
Tssr72827 7 66689589 to 66689603 14 - TSS region transcription start site region 72827
Tssr72828 7 66689613 to 66689624 11 - TSS region transcription start site region 72828
Lins1 7 66689889 to 66717256 27367 + protein coding gene lines homolog 1
Tssr67066 7 66689915 to 66689980 65 + TSS region transcription start site region 67066
Gm45098 7 66723119 to 66723775 656 + unclassified gene predicted gene 45098
Tssr72829 7 66733478 to 66733488 10 - TSS region transcription start site region 72829
Cpgi19223 7 66733504 to 66733718 214 CpG island CpG island 19223
Tssr67067 7 66733558 to 66733585 27 + TSS region transcription start site region 67067
Tssr67068 7 66733593 to 66733624 31 + TSS region transcription start site region 67068
Gm10623 7 66737804 to 66740442 2638 + unclassified gene predicted gene 10623
Cers3 7 66743504 to 66823691 80187 + protein coding gene ceramide synthase 3
Tssr67069 7 66743615 to 66743624 9 + TSS region transcription start site region 67069
Tssr67070 7 66743636 to 66743646 10 + TSS region transcription start site region 67070
Tssr67071 7 66743648 to 66743674 26 + TSS region transcription start site region 67071
Tssr67072 7 66743687 to 66743706 19 + TSS region transcription start site region 67072
Tssr67073 7 66743717 to 66743724 7 + TSS region transcription start site region 67073
Tssr67074 7 66822202 to 66822206 4 + TSS region transcription start site region 67074
Gm33627 7 66826685 to 66839791 13106 - lncRNA gene predicted gene, 33627
Cpgi19224 7 66839477 to 66840798 1321 CpG island CpG island 19224
Tssr67075 7 66839726 to 66839750 24 + TSS region transcription start site region 67075
Adamts17 7 66839735 to 67153171 313436 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
Tssr67076 7 66839752 to 66839770 18 + TSS region transcription start site region 67076
Gm44755 7 66959817 to 66961918 2101 - unclassified gene predicted gene 44755
Gm44609 7 66993968 to 66994427 459 - pseudogene predicted gene 44609
Tssr72830 7 67044307 to 67044331 24 - TSS region transcription start site region 72830
Tssr72831 7 67044334 to 67044344 10 - TSS region transcription start site region 72831
Gm17909 7 67082843 to 67083749 906 + pseudogene predicted gene, 17909
Tssr72832 7 67152721 to 67152757 36 - TSS region transcription start site region 72832
Tssr2292 7 67167278 to 67167282 4 + TSS region transcription start site region 2292
Gm45101 7 67180100 to 67180331 231 + pseudogene predicted gene 45101
1700112J16Rik 7 67204082 to 67222536 18454 - lincRNA gene RIKEN cDNA 1700112J16 gene
Tssr2293 7 67212387 to 67212390 3 + TSS region transcription start site region 2293
Cpgi19225 7 67222188 to 67222635 447 CpG island CpG island 19225
Tssr72833 7 67222412 to 67222434 22 - TSS region transcription start site region 72833
Lysmd4 7 67222544 to 67228468 5924 + protein coding gene LysM, putative peptidoglycan-binding, domain containing 4
Tssr67077 7 67222574 to 67222635 61 + TSS region transcription start site region 67077
Mef2a 7 67231163 to 67372858 141695 - protein coding gene myocyte enhancer factor 2A
Tssr72834 7 67234585 to 67234596 11 - TSS region transcription start site region 72834
Tssr72835 7 67239374 to 67239405 31 - TSS region transcription start site region 72835
Tssr72836 7 67255195 to 67255234 39 - TSS region transcription start site region 72836
Tssr72837 7 67255297 to 67255304 7 - TSS region transcription start site region 72837
Tssr72838 7 67266008 to 67266031 23 - TSS region transcription start site region 72838
Gm44667 7 67268906 to 67272242 3336 - unclassified gene predicted gene 44667
Tssr72839 7 67280595 to 67280612 17 - TSS region transcription start site region 72839
Tssr72840 7 67280638 to 67280666 28 - TSS region transcription start site region 72840
Tssr72841 7 67290951 to 67290996 45 - TSS region transcription start site region 72841
Tssr72842 7 67293462 to 67293465 3 - TSS region transcription start site region 72842
Tssr72843 7 67316831 to 67316841 10 - TSS region transcription start site region 72843
Tssr72844 7 67335250 to 67335254 4 - TSS region transcription start site region 72844
Tssr72845 7 67337406 to 67337436 30 - TSS region transcription start site region 72845
Tssr72846 7 67338534 to 67338538 4 - TSS region transcription start site region 72846
Tssr72847 7 67363448 to 67363452 4 - TSS region transcription start site region 72847
Gm44668 7 67367716 to 67370980 3264 - unclassified gene predicted gene 44668
Tssr72848 7 67370025 to 67370029 4 - TSS region transcription start site region 72848
Cpgi19226 7 67371991 to 67373704 1713 CpG island CpG island 19226
Tssr72849 7 67372772 to 67372845 73 - TSS region transcription start site region 72849
Tssr72850 7 67372846 to 67372857 11 - TSS region transcription start site region 72850
Tssr72851 7 67372862 to 67372871 9 - TSS region transcription start site region 72851
Tssr72852 7 67373096 to 67373126 30 - TSS region transcription start site region 72852
Tssr2294 7 67373160 to 67373178 18 + TSS region transcription start site region 2294
Tssr72853 7 67373192 to 67373244 52 - TSS region transcription start site region 72853
Tssr67078 7 67421270 to 67421300 30 + TSS region transcription start site region 67078
Tssr67079 7 67421330 to 67421346 16 + TSS region transcription start site region 67079
Gm33926 7 67428901 to 67440397 11496 - lincRNA gene predicted gene, 33926
Cpgi19227 7 67428943 to 67429236 293 CpG island CpG island 19227
Gm39025 7 67488011 to 67522791 34780 + lncRNA gene predicted gene, 39025
Tssr67080 7 67495063 to 67495067 4 + TSS region transcription start site region 67080
Lrrc28 7 67513410 to 67645268 131858 - protein coding gene leucine rich repeat containing 28
Rta1 7 67518279 to 89440781 21922502 QTL retinal aging 1
Gm34079 7 67524345 to 67543587 19242 + lncRNA gene predicted gene, 34079
Cpgi19228 7 67528922 to 67529110 188 CpG island CpG island 19228
Tssr72854 7 67528973 to 67528996 23 - TSS region transcription start site region 72854
Gm23233 7 67570567 to 67570703 136 - snoRNA gene predicted gene, 23233
Gm32983 7 67593659 to 67594163 504 + pseudogene predicted gene, 32983
Tssr72855 7 67619977 to 67619997 20 - TSS region transcription start site region 72855
Tssr72856 7 67620016 to 67620028 12 - TSS region transcription start site region 72856
Gm45100 7 67637765 to 67638155 390 + pseudogene predicted gene 45100
Cpgi19229 7 67644911 to 67645900 989 CpG island CpG island 19229
Tssr72857 7 67645195 to 67645273 78 - TSS region transcription start site region 72857
Tssr72858 7 67645280 to 67645332 52 - TSS region transcription start site region 72858
Tssr67081 7 67645429 to 67645461 32 + TSS region transcription start site region 67081
Tssr67082 7 67645469 to 67645506 37 + TSS region transcription start site region 67082
Ttc23 7 67647319 to 67726577 79258 + protein coding gene tetratricopeptide repeat domain 23
Tssr67083 7 67647405 to 67647456 51 + TSS region transcription start site region 67083
Tssr67084 7 67647458 to 67647482 24 + TSS region transcription start site region 67084
Tssr67085 7 67647484 to 67647557 73 + TSS region transcription start site region 67085
Tssr67086 7 67647570 to 67647583 13 + TSS region transcription start site region 67086
Tssr67087 7 67655146 to 67655181 35 + TSS region transcription start site region 67087
Tssr67088 7 67655414 to 67655442 28 + TSS region transcription start site region 67088
Tssr67089 7 67660856 to 67660904 48 + TSS region transcription start site region 67089
Tssr67090 7 67660916 to 67660923 7 + TSS region transcription start site region 67090
Tssr67091 7 67679053 to 67679070 17 + TSS region transcription start site region 67091
Tssr67092 7 67679107 to 67679117 10 + TSS region transcription start site region 67092
Tssr67093 7 67679248 to 67679261 13 + TSS region transcription start site region 67093
Gm44669 7 67679335 to 67681303 1968 - unclassified gene predicted gene 44669
Gm34140 7 67711491 to 67717180 5689 - lncRNA gene predicted gene, 34140
Tssr72859 7 67720184 to 67720189 5 - TSS region transcription start site region 72859
Synm 7 67730161 to 67759742 29581 - protein coding gene synemin, intermediate filament protein
Tssr72860 7 67736524 to 67736547 23 - TSS region transcription start site region 72860
Tssr72861 7 67757621 to 67757626 5 - TSS region transcription start site region 72861
Cpgi19230 7 67758564 to 67760065 1501 CpG island CpG island 19230
Gm45102 7 67759317 to 67760173 856 + unclassified gene predicted gene 45102
Tssr72862 7 67759735 to 67759759 24 - TSS region transcription start site region 72862
Tssr72863 7 67759764 to 67759779 15 - TSS region transcription start site region 72863
Gm23844 7 67778410 to 67778530 120 - miRNA gene predicted gene, 23844
Gm7583 7 67782777 to 67783781 1004 - pseudogene predicted gene 7583
4833412C05Rik 7 67784538 to 67803496 18958 - lincRNA gene RIKEN cDNA 4833412C05 gene
Tssr72864 7 67803489 to 67803532 43 - TSS region transcription start site region 72864
Cpgi19231 7 67803539 to 67804280 741 CpG island CpG island 19231
D7Dcr29 7 67806655 to 67806746 91 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 29
Gm34350 7 67819250 to 67829618 10368 + lincRNA gene predicted gene, 34350
Gm39027 7 67832910 to 67849868 16958 - lincRNA gene predicted gene, 39027
Cpgi19232 7 67849151 to 67849514 363 CpG island CpG island 19232
Gm44666 7 67886195 to 67886585 390 - pseudogene predicted gene 44666
D7Mit277 7 67920759 to 67920927 168 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 277
Tssr67094 7 67937139 to 67937149 10 + TSS region transcription start site region 67094
Tssr67095 7 67950226 to 67950230 4 + TSS region transcription start site region 67095
Cpgi19233 7 67950535 to 67954076 3541 CpG island CpG island 19233
Tssr67096 7 67951769 to 67951772 3 + TSS region transcription start site region 67096
Tssr67097 7 67951857 to 67951910 53 + TSS region transcription start site region 67097
Tssr67098 7 67952004 to 67952065 61 + TSS region transcription start site region 67098
Tssr67099 7 67952082 to 67952092 10 + TSS region transcription start site region 67099
Tssr67100 7 67952369 to 67952428 59 + TSS region transcription start site region 67100
Tssr67101 7 67952435 to 67952450 15 + TSS region transcription start site region 67101
Tssr67102 7 67952817 to 67952828 11 + TSS region transcription start site region 67102
Igf1r 7 67952827 to 68233668 280841 + protein coding gene insulin-like growth factor I receptor
Tssr67103 7 67952877 to 67952922 45 + TSS region transcription start site region 67103
Tssr72865 7 67952949 to 67952958 9 - TSS region transcription start site region 72865
Cpgi19234 7 67958041 to 67958420 379 CpG island CpG island 19234
Tssr67104 7 67958326 to 67958330 4 + TSS region transcription start site region 67104
Tssr67105 7 67998217 to 67998220 3 + TSS region transcription start site region 67105