Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:65680598-66440607

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tarsl2 7 65644898 to 65692091 47193 + protein coding gene threonyl-tRNA synthetase-like 2
Gm33234 7 65690059 to 65693161 3102 - lncRNA gene predicted gene, 33234
Cpgi19215 7 65693077 to 65693956 879 CpG island CpG island 19215
Tm2d3 7 65693417 to 65701913 8496 + protein coding gene TM2 domain containing 3
Tssr67036 7 65693439 to 65693446 7 + TSS region transcription start site region 67036
Tssr67037 7 65693447 to 65693477 30 + TSS region transcription start site region 67037
D7Mit297 7 65734713 to 65734859 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 297
Fcsa6 7 65734713 to 65734859 146 QTL femoral cross-sectional area 6
D7Dcr27 7 65734730 to 65734859 129 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 27
Gm7551 7 65784859 to 65785932 1073 + pseudogene predicted gene 7551
Tssr67038 7 65803030 to 65803048 18 + TSS region transcription start site region 67038
Tssr67039 7 65803900 to 65803918 18 + TSS region transcription start site region 67039
Tssr67040 7 65803985 to 65803992 7 + TSS region transcription start site region 67040
Tssr67041 7 65803994 to 65804003 9 + TSS region transcription start site region 67041
Tssr67042 7 65804016 to 65804023 7 + TSS region transcription start site region 67042
Tssr67043 7 65804024 to 65804038 14 + TSS region transcription start site region 67043
Tssr67044 7 65804042 to 65804050 8 + TSS region transcription start site region 67044
1810008I18Rik 7 65804052 to 65806223 2171 + lincRNA gene RIKEN cDNA 1810008I18 gene
Tssr67045 7 65804061 to 65804062 1 + TSS region transcription start site region 67045
Tssr67046 7 65804066 to 65804082 16 + TSS region transcription start site region 67046
Gm20684 7 65861006 to 65861992 986 - bidirectional promoter lncRNA gene predicted gene 20684
Cpgi19216 7 65861473 to 65863314 1841 CpG island CpG island 19216
Tssr2291 7 65861834 to 65861882 48 + TSS region transcription start site region 2291
Tssr67047 7 65861895 to 65861905 10 + TSS region transcription start site region 67047
Tssr67048 7 65862126 to 65862140 14 + TSS region transcription start site region 67048
Pcsk6 7 65862136 to 66050386 188250 + protein coding gene proprotein convertase subtilisin/kexin type 6
Tssr67049 7 65863127 to 65863130 3 + TSS region transcription start site region 67049
Tssr67050 7 65879723 to 65879726 3 + TSS region transcription start site region 67050
Tssr72814 7 65894278 to 65894301 23 - TSS region transcription start site region 72814
D7Mit199 7 65934072 to 65934201 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 199
Tbthq2 7 66010000 to 77900000 11890000 QTL trabecular bone thickness QTL 2
Gm45213 7 66043602 to 66062271 18669 + protein coding gene predicted gene 45213
Tssr72815 7 66049611 to 66049613 2 - TSS region transcription start site region 72815
Cpgi19217 7 66060294 to 66061006 712 CpG island CpG island 19217
Snrpa1 7 66060336 to 66074587 14251 + protein coding gene small nuclear ribonucleoprotein polypeptide A'
Tssr67051 7 66060528 to 66060597 69 + TSS region transcription start site region 67051
Tssr67052 7 66060598 to 66060607 9 + TSS region transcription start site region 67052
Tssr67053 7 66060774 to 66060787 13 + TSS region transcription start site region 67053
Gm45081 7 66078902 to 66079473 571 - lincRNA gene predicted gene 45081
Cpgi19218 7 66079339 to 66080072 733 CpG island CpG island 19218
Tssr67054 7 66079643 to 66079703 60 + TSS region transcription start site region 67054
Selenos 7 66079649 to 66089405 9756 + protein coding gene selenoprotein S
Tssr67055 7 66079758 to 66079775 17 + TSS region transcription start site region 67055
Tssr67056 7 66079778 to 66079798 20 + TSS region transcription start site region 67056
Tssr67057 7 66079805 to 66079817 12 + TSS region transcription start site region 67057
Cpgi19219 7 66108864 to 66110784 1920 CpG island CpG island 19219
Tssr67058 7 66109450 to 66109473 23 + TSS region transcription start site region 67058
Tssr67059 7 66109474 to 66109505 31 + TSS region transcription start site region 67059
Chsy1 7 66109515 to 66173798 64283 + protein coding gene chondroitin sulfate synthase 1
Gm26827 7 66109515 to 66173121 63606 - antisense lncRNA gene predicted gene, 26827
Tssr67060 7 66109530 to 66109539 9 + TSS region transcription start site region 67060
Gm23042 7 66119303 to 66119403 100 - snRNA gene predicted gene, 23042
Gm18988 7 66126973 to 66127699 726 - pseudogene predicted gene, 18988
Tssr67061 7 66172901 to 66172917 16 + TSS region transcription start site region 67061
Tssr67062 7 66174738 to 66174739 1 + TSS region transcription start site region 67062
Tssr67063 7 66176508 to 66176540 32 + TSS region transcription start site region 67063
Gm45080 7 66190555 to 66190837 282 + pseudogene predicted gene 45080
Tssr67064 7 66196138 to 66196177 39 + TSS region transcription start site region 67064
Gm33442 7 66254771 to 66277801 23030 + lncRNA gene predicted gene, 33442
Lrrk1 7 66258745 to 66388341 129596 - protein coding gene leucine-rich repeat kinase 1
Hfhl3 7 66281288 to 66281288 0 QTL high-frequency hearing loss 3
Gm45989 7 66281726 to 66287433 5707 + lncRNA gene predicted gene, 45989
Gm44752 7 66309195 to 66312499 3304 + antisense lncRNA gene predicted gene 44752
Tssr67065 7 66324527 to 66324531 4 + TSS region transcription start site region 67065
Tssr72816 7 66332538 to 66332554 16 - TSS region transcription start site region 72816
Tssr72817 7 66337139 to 66337175 36 - TSS region transcription start site region 72817
Tssr72818 7 66337615 to 66337655 40 - TSS region transcription start site region 72818
D7Dcr28 7 66340062 to 66340165 103 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 28
Gm10974 7 66365905 to 66386309 20404 + protein coding gene predicted gene 10974
Gm23957 7 66370392 to 66370481 89 - rRNA gene predicted gene, 23957
Tssr72819 7 66377213 to 66377252 39 - TSS region transcription start site region 72819
Tssr72820 7 66378039 to 66378042 3 - TSS region transcription start site region 72820
Mir7057 7 66381667 to 66381724 57 - miRNA gene microRNA 7057
Cpgi19220 7 66387507 to 66388587 1080 CpG island CpG island 19220
Tssr72821 7 66388286 to 66388341 55 - TSS region transcription start site region 72821
Aldh1a3 7 66390892 to 66427477 36585 - protein coding gene aldehyde dehydrogenase family 1, subfamily A3
Cpgi19221 7 66427024 to 66428188 1164 CpG island CpG island 19221
Tssr72822 7 66427469 to 66427483 14 - TSS region transcription start site region 72822
Gm33515 7 66428647 to 66430494 1847 + lncRNA gene predicted gene, 33515