Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:65140528-66980597

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam189a1 7 64756091 to 65156564 400473 - protein coding gene family with sequence similarity 189, member A1
Cpgi19206 7 65155555 to 65157015 1460 CpG island CpG island 19206
Tssr72796 7 65156505 to 65156561 56 - TSS region transcription start site region 72796
Gm17908 7 65170639 to 65171894 1255 + pseudogene predicted gene, 17908
Gm17918 7 65173618 to 65174191 573 - pseudogene predicted gene, 17918
1810049I09Rik 7 65212814 to 65213429 615 - lincRNA gene RIKEN cDNA 1810049I09 gene
Tssr72797 7 65213364 to 65213373 9 - TSS region transcription start site region 72797
Tssr72798 7 65213397 to 65213442 45 - TSS region transcription start site region 72798
Tssr72799 7 65213444 to 65213449 5 - TSS region transcription start site region 72799
Cpgi19207 7 65279316 to 65279544 228 CpG island CpG island 19207
Cpgi19208 7 65282850 to 65283129 279 CpG island CpG island 19208
Tjp1 7 65296165 to 65527781 231616 - protein coding gene tight junction protein 1
Tssr72800 7 65313977 to 65313981 4 - TSS region transcription start site region 72800
D130061D10Rik 7 65331319 to 65334295 2976 unclassified gene RIKEN cDNA D130061D10 gene
Tssr72801 7 65338357 to 65338362 5 - TSS region transcription start site region 72801
Tssr72802 7 65347554 to 65347557 3 - TSS region transcription start site region 72802
Tssr72803 7 65364202 to 65364206 4 - TSS region transcription start site region 72803
Gm44794 7 65366372 to 65366782 410 - unclassified gene predicted gene 44794
Cpgi19209 7 65370363 to 65371594 1231 CpG island CpG island 19209
Tssr72804 7 65370874 to 65370884 10 - TSS region transcription start site region 72804
Tssr72805 7 65370889 to 65370900 11 - TSS region transcription start site region 72805
Tssr72806 7 65370908 to 65370948 40 - TSS region transcription start site region 72806
Tssr72807 7 65371210 to 65371287 77 - TSS region transcription start site region 72807
Tssr67032 7 65371422 to 65371433 11 + TSS region transcription start site region 67032
Gm33068 7 65371642 to 65374397 2755 + lncRNA gene predicted gene, 33068
Cpgi19210 7 65393832 to 65394205 373 CpG island CpG island 19210
Gm44795 7 65401847 to 65402165 318 + pseudogene predicted gene 44795
Cpgi19211 7 65423796 to 65424001 205 CpG island CpG island 19211
Tssr72808 7 65452908 to 65452911 3 - TSS region transcription start site region 72808
Tssr2288 7 65472206 to 65472209 3 + TSS region transcription start site region 2288
Gm44792 7 65479594 to 65481221 1627 - unclassified gene predicted gene 44792
Cpgi19212 7 65526982 to 65528076 1094 CpG island CpG island 19212
Tssr72809 7 65527734 to 65527838 104 - TSS region transcription start site region 72809
Gm7546 7 65579998 to 65635913 55915 - pseudogene predicted gene 7546
D7Mit195.2 7 65581235 to 65581346 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 195.2
D7Mit195 7 65581318 to 65581438 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 195
BC046251 7 65582070 to 65618884 36814 + lincRNA gene cDNA sequence BC046251
D7Mit161 7 65584566 to 65584672 106 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 161
Tssr2289 7 65624002 to 65624003 1 - TSS region transcription start site region 2289
Tssr72810 7 65635925 to 65635930 5 - TSS region transcription start site region 72810
Tssr2290 7 65635955 to 65635958 3 - TSS region transcription start site region 2290
Tssr72811 7 65635962 to 65635973 11 - TSS region transcription start site region 72811
Tssr72812 7 65635981 to 65635993 12 - TSS region transcription start site region 72812
Tssr72813 7 65635994 to 65635998 4 - TSS region transcription start site region 72813
Cpgi19213 7 65644402 to 65645421 1019 CpG island CpG island 19213
Tssr67033 7 65644870 to 65644878 8 + TSS region transcription start site region 67033
Tssr67034 7 65644884 to 65644911 27 + TSS region transcription start site region 67034
Tarsl2 7 65644898 to 65692091 47193 + protein coding gene threonyl-tRNA synthetase-like 2
Tssr67035 7 65644918 to 65644932 14 + TSS region transcription start site region 67035
Cpgi19214 7 65678009 to 65678240 231 CpG island CpG island 19214
Gm33234 7 65690059 to 65693161 3102 - lncRNA gene predicted gene, 33234
Cpgi19215 7 65693077 to 65693956 879 CpG island CpG island 19215
Tm2d3 7 65693417 to 65701913 8496 + protein coding gene TM2 domain containing 3
Tssr67036 7 65693439 to 65693446 7 + TSS region transcription start site region 67036
Tssr67037 7 65693447 to 65693477 30 + TSS region transcription start site region 67037
D7Mit297 7 65734713 to 65734859 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 297
Fcsa6 7 65734713 to 65734859 146 QTL femoral cross-sectional area 6
D7Dcr27 7 65734730 to 65734859 129 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 27
Gm7551 7 65784859 to 65785932 1073 + pseudogene predicted gene 7551
Tssr67038 7 65803030 to 65803048 18 + TSS region transcription start site region 67038
Tssr67039 7 65803900 to 65803918 18 + TSS region transcription start site region 67039
Tssr67040 7 65803985 to 65803992 7 + TSS region transcription start site region 67040
Tssr67041 7 65803994 to 65804003 9 + TSS region transcription start site region 67041
Tssr67042 7 65804016 to 65804023 7 + TSS region transcription start site region 67042
Tssr67043 7 65804024 to 65804038 14 + TSS region transcription start site region 67043
Tssr67044 7 65804042 to 65804050 8 + TSS region transcription start site region 67044
1810008I18Rik 7 65804052 to 65806223 2171 + lincRNA gene RIKEN cDNA 1810008I18 gene
Tssr67045 7 65804061 to 65804062 1 + TSS region transcription start site region 67045
Tssr67046 7 65804066 to 65804082 16 + TSS region transcription start site region 67046
Gm20684 7 65861006 to 65861992 986 - bidirectional promoter lncRNA gene predicted gene 20684
Cpgi19216 7 65861473 to 65863314 1841 CpG island CpG island 19216
Tssr2291 7 65861834 to 65861882 48 + TSS region transcription start site region 2291
Tssr67047 7 65861895 to 65861905 10 + TSS region transcription start site region 67047
Tssr67048 7 65862126 to 65862140 14 + TSS region transcription start site region 67048
Pcsk6 7 65862136 to 66050386 188250 + protein coding gene proprotein convertase subtilisin/kexin type 6
Tssr67049 7 65863127 to 65863130 3 + TSS region transcription start site region 67049
Tssr67050 7 65879723 to 65879726 3 + TSS region transcription start site region 67050
Tssr72814 7 65894278 to 65894301 23 - TSS region transcription start site region 72814
D7Mit199 7 65934072 to 65934201 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 199
Tbthq2 7 66010000 to 77900000 11890000 QTL trabecular bone thickness QTL 2
Gm45213 7 66043602 to 66062271 18669 + protein coding gene predicted gene 45213
Tssr72815 7 66049611 to 66049613 2 - TSS region transcription start site region 72815
Cpgi19217 7 66060294 to 66061006 712 CpG island CpG island 19217
Snrpa1 7 66060336 to 66074587 14251 + protein coding gene small nuclear ribonucleoprotein polypeptide A'
Tssr67051 7 66060528 to 66060597 69 + TSS region transcription start site region 67051
Tssr67052 7 66060598 to 66060607 9 + TSS region transcription start site region 67052
Tssr67053 7 66060774 to 66060787 13 + TSS region transcription start site region 67053
Gm45081 7 66078902 to 66079473 571 - lincRNA gene predicted gene 45081
Cpgi19218 7 66079339 to 66080072 733 CpG island CpG island 19218
Tssr67054 7 66079643 to 66079703 60 + TSS region transcription start site region 67054
Selenos 7 66079649 to 66089405 9756 + protein coding gene selenoprotein S
Tssr67055 7 66079758 to 66079775 17 + TSS region transcription start site region 67055
Tssr67056 7 66079778 to 66079798 20 + TSS region transcription start site region 67056
Tssr67057 7 66079805 to 66079817 12 + TSS region transcription start site region 67057
Cpgi19219 7 66108864 to 66110784 1920 CpG island CpG island 19219
Tssr67058 7 66109450 to 66109473 23 + TSS region transcription start site region 67058
Tssr67059 7 66109474 to 66109505 31 + TSS region transcription start site region 67059
Chsy1 7 66109515 to 66173798 64283 + protein coding gene chondroitin sulfate synthase 1
Gm26827 7 66109515 to 66173121 63606 - antisense lncRNA gene predicted gene, 26827
Tssr67060 7 66109530 to 66109539 9 + TSS region transcription start site region 67060
Gm23042 7 66119303 to 66119403 100 - snRNA gene predicted gene, 23042
Gm18988 7 66126973 to 66127699 726 - pseudogene predicted gene, 18988
Tssr67061 7 66172901 to 66172917 16 + TSS region transcription start site region 67061
Tssr67062 7 66174738 to 66174739 1 + TSS region transcription start site region 67062
Tssr67063 7 66176508 to 66176540 32 + TSS region transcription start site region 67063
Gm45080 7 66190555 to 66190837 282 + pseudogene predicted gene 45080
Tssr67064 7 66196138 to 66196177 39 + TSS region transcription start site region 67064
Gm33442 7 66254771 to 66277801 23030 + lncRNA gene predicted gene, 33442
Lrrk1 7 66258745 to 66388341 129596 - protein coding gene leucine-rich repeat kinase 1
Hfhl3 7 66281288 to 66281288 0 QTL high-frequency hearing loss 3
Gm45989 7 66281726 to 66287433 5707 + lncRNA gene predicted gene, 45989
Gm44752 7 66309195 to 66312499 3304 + antisense lncRNA gene predicted gene 44752
Tssr67065 7 66324527 to 66324531 4 + TSS region transcription start site region 67065
Tssr72816 7 66332538 to 66332554 16 - TSS region transcription start site region 72816
Tssr72817 7 66337139 to 66337175 36 - TSS region transcription start site region 72817
Tssr72818 7 66337615 to 66337655 40 - TSS region transcription start site region 72818
D7Dcr28 7 66340062 to 66340165 103 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 28
Gm10974 7 66365905 to 66386309 20404 + protein coding gene predicted gene 10974
Gm23957 7 66370392 to 66370481 89 - rRNA gene predicted gene, 23957
Tssr72819 7 66377213 to 66377252 39 - TSS region transcription start site region 72819
Tssr72820 7 66378039 to 66378042 3 - TSS region transcription start site region 72820
Mir7057 7 66381667 to 66381724 57 - miRNA gene microRNA 7057
Cpgi19220 7 66387507 to 66388587 1080 CpG island CpG island 19220
Tssr72821 7 66388286 to 66388341 55 - TSS region transcription start site region 72821
Aldh1a3 7 66390892 to 66427477 36585 - protein coding gene aldehyde dehydrogenase family 1, subfamily A3
Cpgi19221 7 66427024 to 66428188 1164 CpG island CpG island 19221
Tssr72822 7 66427469 to 66427483 14 - TSS region transcription start site region 72822
Gm33515 7 66428647 to 66430494 1847 + lncRNA gene predicted gene, 33515
Gm44753 7 66441598 to 66444250 2652 + lincRNA gene predicted gene 44753
Tabw 7 66543530 to 66543642 112 QTL TallyHo associated body weight
D7Mit231 7 66543530 to 66543642 112 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 231
Gm44754 7 66565226 to 66565625 399 - pseudogene predicted gene 44754
Gm33570 7 66581857 to 66585518 3661 + lincRNA gene predicted gene, 33570
Gm44610 7 66615322 to 66619148 3826 - unclassified gene predicted gene 44610
Asb7 7 66644565 to 66689596 45031 - protein coding gene ankyrin repeat and SOCS box-containing 7
Tssr72823 7 66684294 to 66684299 5 - TSS region transcription start site region 72823
Tssr72824 7 66689474 to 66689491 17 - TSS region transcription start site region 72824
Tssr72825 7 66689500 to 66689525 25 - TSS region transcription start site region 72825
Tssr72826 7 66689551 to 66689569 18 - TSS region transcription start site region 72826
Cpgi19222 7 66689588 to 66690390 802 CpG island CpG island 19222
Tssr72827 7 66689589 to 66689603 14 - TSS region transcription start site region 72827
Tssr72828 7 66689613 to 66689624 11 - TSS region transcription start site region 72828
Lins1 7 66689889 to 66717256 27367 + protein coding gene lines homolog 1
Tssr67066 7 66689915 to 66689980 65 + TSS region transcription start site region 67066
Gm45098 7 66723119 to 66723775 656 + unclassified gene predicted gene 45098
Tssr72829 7 66733478 to 66733488 10 - TSS region transcription start site region 72829
Cpgi19223 7 66733504 to 66733718 214 CpG island CpG island 19223
Tssr67067 7 66733558 to 66733585 27 + TSS region transcription start site region 67067
Tssr67068 7 66733593 to 66733624 31 + TSS region transcription start site region 67068
Gm10623 7 66737804 to 66740442 2638 + unclassified gene predicted gene 10623
Cers3 7 66743504 to 66823691 80187 + protein coding gene ceramide synthase 3
Tssr67069 7 66743615 to 66743624 9 + TSS region transcription start site region 67069
Tssr67070 7 66743636 to 66743646 10 + TSS region transcription start site region 67070
Tssr67071 7 66743648 to 66743674 26 + TSS region transcription start site region 67071
Tssr67072 7 66743687 to 66743706 19 + TSS region transcription start site region 67072
Tssr67073 7 66743717 to 66743724 7 + TSS region transcription start site region 67073
Tssr67074 7 66822202 to 66822206 4 + TSS region transcription start site region 67074
Gm33627 7 66826685 to 66839791 13106 - lncRNA gene predicted gene, 33627
Cpgi19224 7 66839477 to 66840798 1321 CpG island CpG island 19224
Tssr67075 7 66839726 to 66839750 24 + TSS region transcription start site region 67075
Adamts17 7 66839735 to 67153171 313436 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
Tssr67076 7 66839752 to 66839770 18 + TSS region transcription start site region 67076
Gm44755 7 66959817 to 66961918 2101 - unclassified gene predicted gene 44755