Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:64821165-66002781

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam189a1 7 64756091 to 65156564 400473 - protein coding gene family with sequence similarity 189, member A1
D7Mit275 7 64821733 to 64821855 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 275
Cpgi19204 7 64840070 to 64840366 296 CpG island CpG island 19204
D7Jcs22 7 64840473 to 64840742 269 DNA segment DNA segment, Chr 7, John C. Schimenti 22
Nsmce3 7 64871650 to 64873040 1390 - protein coding gene NSE3 homolog, SMC5-SMC6 complex component
Cpgi19205 7 64872274 to 64873416 1142 CpG island CpG island 19205
Tssr72792 7 64872959 to 64872987 28 - TSS region transcription start site region 72792
Tssr72793 7 64872993 to 64873037 44 - TSS region transcription start site region 72793
D7Mit336 7 64886530 to 64886825 295 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology-336
Tssr72794 7 64907579 to 64907581 2 - TSS region transcription start site region 72794
Tssr72795 7 64925582 to 64925611 29 - TSS region transcription start site region 72795
D7Mit315 7 64952151 to 64952274 123 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 315
Gm25249 7 64956499 to 64956576 77 - miRNA gene predicted gene, 25249
Tssr2287 7 64971456 to 64971457 1 + TSS region transcription start site region 2287
Gm32963 7 65052100 to 65054964 2864 + lncRNA gene predicted gene, 32963
D7Mit313 7 65075129 to 65075277 148 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 313
Cpgi19206 7 65155555 to 65157015 1460 CpG island CpG island 19206
Tssr72796 7 65156505 to 65156561 56 - TSS region transcription start site region 72796
Gm17908 7 65170639 to 65171894 1255 + pseudogene predicted gene, 17908
Gm17918 7 65173618 to 65174191 573 - pseudogene predicted gene, 17918
1810049I09Rik 7 65212814 to 65213429 615 - lincRNA gene RIKEN cDNA 1810049I09 gene
Tssr72797 7 65213364 to 65213373 9 - TSS region transcription start site region 72797
Tssr72798 7 65213397 to 65213442 45 - TSS region transcription start site region 72798
Tssr72799 7 65213444 to 65213449 5 - TSS region transcription start site region 72799
Cpgi19207 7 65279316 to 65279544 228 CpG island CpG island 19207
Cpgi19208 7 65282850 to 65283129 279 CpG island CpG island 19208
Tjp1 7 65296165 to 65527781 231616 - protein coding gene tight junction protein 1
Tssr72800 7 65313977 to 65313981 4 - TSS region transcription start site region 72800
D130061D10Rik 7 65331319 to 65334295 2976 unclassified gene RIKEN cDNA D130061D10 gene
Tssr72801 7 65338357 to 65338362 5 - TSS region transcription start site region 72801
Tssr72802 7 65347554 to 65347557 3 - TSS region transcription start site region 72802
Tssr72803 7 65364202 to 65364206 4 - TSS region transcription start site region 72803
Gm44794 7 65366372 to 65366782 410 - unclassified gene predicted gene 44794
Cpgi19209 7 65370363 to 65371594 1231 CpG island CpG island 19209
Tssr72804 7 65370874 to 65370884 10 - TSS region transcription start site region 72804
Tssr72805 7 65370889 to 65370900 11 - TSS region transcription start site region 72805
Tssr72806 7 65370908 to 65370948 40 - TSS region transcription start site region 72806
Tssr72807 7 65371210 to 65371287 77 - TSS region transcription start site region 72807
Tssr67032 7 65371422 to 65371433 11 + TSS region transcription start site region 67032
Gm33068 7 65371642 to 65374397 2755 + lncRNA gene predicted gene, 33068
Cpgi19210 7 65393832 to 65394205 373 CpG island CpG island 19210
Gm44795 7 65401847 to 65402165 318 + pseudogene predicted gene 44795
Cpgi19211 7 65423796 to 65424001 205 CpG island CpG island 19211
Tssr72808 7 65452908 to 65452911 3 - TSS region transcription start site region 72808
Tssr2288 7 65472206 to 65472209 3 + TSS region transcription start site region 2288
Gm44792 7 65479594 to 65481221 1627 - unclassified gene predicted gene 44792
Cpgi19212 7 65526982 to 65528076 1094 CpG island CpG island 19212
Tssr72809 7 65527734 to 65527838 104 - TSS region transcription start site region 72809
Gm7546 7 65579998 to 65635913 55915 - pseudogene predicted gene 7546
D7Mit195.2 7 65581235 to 65581346 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 195.2
D7Mit195 7 65581318 to 65581438 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 195
BC046251 7 65582070 to 65618884 36814 + lincRNA gene cDNA sequence BC046251
D7Mit161 7 65584566 to 65584672 106 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 161
Tssr2289 7 65624002 to 65624003 1 - TSS region transcription start site region 2289
Tssr72810 7 65635925 to 65635930 5 - TSS region transcription start site region 72810
Tssr2290 7 65635955 to 65635958 3 - TSS region transcription start site region 2290
Tssr72811 7 65635962 to 65635973 11 - TSS region transcription start site region 72811
Tssr72812 7 65635981 to 65635993 12 - TSS region transcription start site region 72812
Tssr72813 7 65635994 to 65635998 4 - TSS region transcription start site region 72813
Cpgi19213 7 65644402 to 65645421 1019 CpG island CpG island 19213
Tssr67033 7 65644870 to 65644878 8 + TSS region transcription start site region 67033
Tssr67034 7 65644884 to 65644911 27 + TSS region transcription start site region 67034
Tarsl2 7 65644898 to 65692091 47193 + protein coding gene threonyl-tRNA synthetase-like 2
Tssr67035 7 65644918 to 65644932 14 + TSS region transcription start site region 67035
Cpgi19214 7 65678009 to 65678240 231 CpG island CpG island 19214
Gm33234 7 65690059 to 65693161 3102 - lncRNA gene predicted gene, 33234
Cpgi19215 7 65693077 to 65693956 879 CpG island CpG island 19215
Tm2d3 7 65693417 to 65701913 8496 + protein coding gene TM2 domain containing 3
Tssr67036 7 65693439 to 65693446 7 + TSS region transcription start site region 67036
Tssr67037 7 65693447 to 65693477 30 + TSS region transcription start site region 67037
D7Mit297 7 65734713 to 65734859 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 297
Fcsa6 7 65734713 to 65734859 146 QTL femoral cross-sectional area 6
D7Dcr27 7 65734730 to 65734859 129 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 27
Gm7551 7 65784859 to 65785932 1073 + pseudogene predicted gene 7551
Tssr67038 7 65803030 to 65803048 18 + TSS region transcription start site region 67038
Tssr67039 7 65803900 to 65803918 18 + TSS region transcription start site region 67039
Tssr67040 7 65803985 to 65803992 7 + TSS region transcription start site region 67040
Tssr67041 7 65803994 to 65804003 9 + TSS region transcription start site region 67041
Tssr67042 7 65804016 to 65804023 7 + TSS region transcription start site region 67042
Tssr67043 7 65804024 to 65804038 14 + TSS region transcription start site region 67043
Tssr67044 7 65804042 to 65804050 8 + TSS region transcription start site region 67044
1810008I18Rik 7 65804052 to 65806223 2171 + lincRNA gene RIKEN cDNA 1810008I18 gene
Tssr67045 7 65804061 to 65804062 1 + TSS region transcription start site region 67045
Tssr67046 7 65804066 to 65804082 16 + TSS region transcription start site region 67046
Gm20684 7 65861006 to 65861992 986 - bidirectional promoter lncRNA gene predicted gene 20684
Cpgi19216 7 65861473 to 65863314 1841 CpG island CpG island 19216
Tssr2291 7 65861834 to 65861882 48 + TSS region transcription start site region 2291
Tssr67047 7 65861895 to 65861905 10 + TSS region transcription start site region 67047
Tssr67048 7 65862126 to 65862140 14 + TSS region transcription start site region 67048
Pcsk6 7 65862136 to 66050386 188250 + protein coding gene proprotein convertase subtilisin/kexin type 6
Tssr67049 7 65863127 to 65863130 3 + TSS region transcription start site region 67049
Tssr67050 7 65879723 to 65879726 3 + TSS region transcription start site region 67050
Tssr72814 7 65894278 to 65894301 23 - TSS region transcription start site region 72814
D7Mit199 7 65934072 to 65934201 129 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 199