Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:6343726-7964523

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38944 7 6342995 to 6344005 1010 - lincRNA gene predicted gene, 38944
Cpgi18291 7 6343533 to 6344010 477 CpG island CpG island 18291
Tssr2075 7 6343724 to 6343767 43 + TSS region transcription start site region 2075
Gm3854 7 6353724 to 6354530 806 + pseudogene predicted gene 3854
Cpgi18292 7 6362455 to 6363607 1152 CpG island CpG island 18292
Zfp78 7 6363280 to 6382605 19325 + protein coding gene zinc finger protein 78
Tssr64446 7 6363287 to 6363300 13 + TSS region transcription start site region 64446
Cpgi18293 7 6382931 to 6383660 729 CpG island CpG island 18293
Tssr64447 7 6383310 to 6383358 48 + TSS region transcription start site region 64447
Zfp28 7 6383318 to 6396637 13319 + protein coding gene zinc finger protein 28
Tssr64448 7 6389650 to 6389688 38 + TSS region transcription start site region 64448
Tssr64449 7 6398698 to 6398729 31 + TSS region transcription start site region 64449
Gm16306 7 6399054 to 6399636 582 + sense intronic lncRNA gene predicted gene 16306
Gm16307 7 6405175 to 6405384 209 - pseudogene predicted gene 16307
Cpgi18294 7 6410037 to 6410406 369 CpG island CpG island 18294
Tssr64450 7 6410218 to 6410229 11 + TSS region transcription start site region 64450
Gm20715 7 6410277 to 6441691 31414 + protein coding gene predicted gene 20715
Tssr64451 7 6415164 to 6415206 42 + TSS region transcription start site region 64451
Smim17 7 6415175 to 6431086 15911 + protein coding gene small integral membrane protein 17
Tssr64452 7 6415212 to 6415219 7 + TSS region transcription start site region 64452
Cpgi18295 7 6415425 to 6415590 165 CpG island CpG island 18295
D7Mit363 7 6436466 to 6436615 149 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 363
Olfr1344 7 6439902 to 6440867 965 + protein coding gene olfactory receptor 1344
Cpgi18296 7 6440018 to 6440563 545 CpG island CpG island 18296
Olfr1345-ps1 7 6446874 to 6447117 243 + pseudogene olfactory receptor 1345, pseudogene 1
Tssr64453 7 6460222 to 6460227 5 + TSS region transcription start site region 64453
Olfr1336 7 6460511 to 6461455 944 + protein coding gene olfactory receptor 1336
Olfr1346 7 6474112 to 6475053 941 + protein coding gene olfactory receptor 1346
Olfr5 7 6480216 to 6487115 6899 - protein coding gene olfactory receptor 5
Olfr1347 7 6487913 to 6488872 959 - protein coding gene olfactory receptor 1347
Olfr1348 7 6501286 to 6502224 938 - protein coding gene olfactory receptor 1348
n-R5s150 7 6512235 to 6512342 107 + rRNA gene nuclear encoded rRNA 5S 150
Olfr1349 7 6514199 to 6520355 6156 - protein coding gene olfactory receptor 1349
Cpgi18297 7 6514787 to 6515459 672 CpG island CpG island 18297
Gm7587 7 6533491 to 6534511 1020 - pseudogene predicted gene 7587
Olfr1350 7 6569993 to 6570919 926 + protein coding gene olfactory receptor 1350
D7Mit75 7 6572219 to 6572436 217 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 75
Zim2 7 6651748 to 6662368 10620 - lncRNA gene zinc finger, imprinted 2
Tssr70587 7 6662338 to 6662345 7 - TSS region transcription start site region 70587
1110014L15Rik 7 6671268 to 6672887 1619 unclassified non-coding RNA gene RIKEN cDNA 1110014L15 gene
Zim1 7 6674444 to 6696541 22097 - protein coding gene zinc finger, imprinted 1
Cpgi18298 7 6677287 to 6677892 605 CpG island CpG island 18298
Tssr70588 7 6678246 to 6678250 4 - TSS region transcription start site region 70588
Tssr70589 7 6685299 to 6685323 24 - TSS region transcription start site region 70589
Tssr70590 7 6685454 to 6685513 59 - TSS region transcription start site region 70590
Tssr70591 7 6685519 to 6685539 20 - TSS region transcription start site region 70591
Tssr70592 7 6685608 to 6685619 11 - TSS region transcription start site region 70592
Tssr70593 7 6689496 to 6689507 11 - TSS region transcription start site region 70593
Tssr70594 7 6690867 to 6690886 19 - TSS region transcription start site region 70594
Tssr70595 7 6691140 to 6691160 20 - TSS region transcription start site region 70595
Tssr70596 7 6691162 to 6691176 14 - TSS region transcription start site region 70596
Tssr70597 7 6691213 to 6691225 12 - TSS region transcription start site region 70597
Tssr70598 7 6691308 to 6691319 11 - TSS region transcription start site region 70598
D7Mit244 7 6691973 to 6692105 132 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 244
Cpgi18299 7 6696247 to 6696694 447 CpG island CpG island 18299
Tssr70599 7 6696423 to 6696456 33 - TSS region transcription start site region 70599
Peg3 7 6703892 to 6730431 26539 - protein coding gene paternally expressed 3
Tssr70600 7 6706308 to 6706324 16 - TSS region transcription start site region 70600
Tssr70601 7 6706410 to 6706422 12 - TSS region transcription start site region 70601
Tssr70602 7 6706611 to 6706626 15 - TSS region transcription start site region 70602
Peg3os 7 6706760 to 6707624 864 + antisense lncRNA gene Peg3 opposite strand
Tssr70603 7 6707554 to 6707570 16 - TSS region transcription start site region 70603
Tssr70604 7 6708747 to 6708769 22 - TSS region transcription start site region 70604
Tssr70605 7 6709642 to 6709658 16 - TSS region transcription start site region 70605
Tssr70606 7 6709979 to 6709990 11 - TSS region transcription start site region 70606
Cpgi18300 7 6710638 to 6710944 306 CpG island CpG island 18300
Tssr64454 7 6717831 to 6717860 29 + TSS region transcription start site region 64454
Cpgi18301 7 6729378 to 6730606 1228 CpG island CpG island 18301
Tssr70607 7 6730412 to 6730431 19 - TSS region transcription start site region 70607
Tssr64455 7 6730563 to 6730646 83 + TSS region transcription start site region 64455
Usp29 7 6730578 to 6967219 236641 + protein coding gene ubiquitin specific peptidase 29
Gm27675 7 6730598 to 6730691 93 + unclassified non-coding RNA gene predicted gene, 27675
Tssr64456 7 6730687 to 6730716 29 + TSS region transcription start site region 64456
Tssr64457 7 6734121 to 6734138 17 + TSS region transcription start site region 64457
Gm44862 7 6742646 to 6743700 1054 + unclassified gene predicted gene 44862
Gm44863 7 6753043 to 6754464 1421 + unclassified gene predicted gene 44863
Tssr2076 7 6774844 to 6774845 1 + TSS region transcription start site region 2076
Mir3099 7 6803587 to 6803670 83 + miRNA gene microRNA 3099
Gm44585 7 6805851 to 6806457 606 + unclassified gene predicted gene 44585
Gm44584 7 6809001 to 6811880 2879 + unclassified gene predicted gene 44584
Tssr64458 7 6813773 to 6813775 2 + TSS region transcription start site region 64458
Gm22649 7 6839824 to 6840121 297 - unclassified non-coding RNA gene predicted gene, 22649
Cpgi18302 7 6874465 to 6874658 193 CpG island CpG island 18302
Gm44586 7 6891038 to 6893774 2736 + unclassified gene predicted gene 44586
Tssr64459 7 6894248 to 6894251 3 + TSS region transcription start site region 64459
Gm44587 7 6900352 to 6902036 1684 + unclassified gene predicted gene 44587
Tssr2077 7 6952213 to 6952221 8 + TSS region transcription start site region 2077
Zim3 7 6955685 to 6976662 20977 - antisense lncRNA gene zinc finger, imprinted 3
Cpgi18303 7 6977059 to 6977453 394 CpG island CpG island 18303
Tssr64460 7 6977073 to 6977108 35 + TSS region transcription start site region 64460
Zfp264 7 6977246 to 6991087 13841 + pseudogene zinc finger protein 264
Aurkc 7 6995300 to 7003091 7791 + protein coding gene aurora kinase C
Tssr64461 7 6995486 to 6995498 12 + TSS region transcription start site region 64461
Pafah1b1-ps2 7 7061859 to 7063452 1593 - pseudogene platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 2
Gm6828 7 7096843 to 7098028 1185 - pseudogene predicted gene 6828
Gm3530 7 7101217 to 7104033 2816 - pseudogene predicted gene 3530
Gm44583 7 7106975 to 7107910 935 + pseudogene predicted gene 44583
Zfp954 7 7114683 to 7121476 6793 - protein coding gene zinc finger protein 954
Cpgi18304 7 7121004 to 7121600 596 CpG island CpG island 18304
Tssr70608 7 7121433 to 7121469 36 - TSS region transcription start site region 70608
Tssr70609 7 7121481 to 7121485 4 - TSS region transcription start site region 70609
Gm44697 7 7122160 to 7123838 1678 + unclassified gene predicted gene 44697
Zfp773 7 7130678 to 7136755 6077 - protein coding gene zinc finger protein 773
Vmn2r-ps35 7 7153726 to 7154523 797 - pseudogene vomeronasal 2, receptor, pseudogene 35
Cpgi18305 7 7171332 to 7171698 366 CpG island CpG island 18305
Tssr64462 7 7171346 to 7171373 27 + TSS region transcription start site region 64462
Zfp418 7 7171353 to 7183560 12207 + protein coding gene zinc finger protein 418
Tssr64463 7 7185664 to 7185665 1 + TSS region transcription start site region 64463
Zfp772 7 7202122 to 7209998 7876 - protein coding gene zinc finger protein 772
Gm45844 7 7213017 to 7278289 65272 - protein coding gene predicted gene 45844
Vmn2r29 7 7231327 to 7247328 16001 - protein coding gene vomeronasal 2, receptor 29
Gm18190 7 7265501 to 7266081 580 - pseudogene predicted gene, 18190
Cpgi18306 7 7277728 to 7278553 825 CpG island CpG island 18306
Tssr64464 7 7277989 to 7278000 11 + TSS region transcription start site region 64464
Tssr70610 7 7278029 to 7278045 16 - TSS region transcription start site region 70610
Tssr70611 7 7278070 to 7278086 16 - TSS region transcription start site region 70611
Clcn4 7 7282309 to 7300851 18542 - protein coding gene chloride channel, voltage-sensitive 4
Cpgi18307 7 7294768 to 7294962 194 CpG island CpG island 18307
Gm45631 7 7295766 to 7297137 1371 + antisense lncRNA gene predicted gene 45631
Cpgi18308 7 7295836 to 7297266 1430 CpG island CpG island 18308
Cpgi18309 7 7297957 to 7300159 2202 CpG island CpG island 18309
Tssr70612 7 7298386 to 7298456 70 - TSS region transcription start site region 70612
Tssr70613 7 7298738 to 7298749 11 - TSS region transcription start site region 70613
Tssr70614 7 7298761 to 7298790 29 - TSS region transcription start site region 70614
Tssr64465 7 7298829 to 7298849 20 + TSS region transcription start site region 64465
Mir5620 7 7298891 to 7298946 55 + miRNA gene microRNA 5620
Tssr64466 7 7299061 to 7299075 14 + TSS region transcription start site region 64466
Tssr70615 7 7299470 to 7299486 16 - TSS region transcription start site region 70615
Tssr70616 7 7299492 to 7299540 48 - TSS region transcription start site region 70616
Cpgi18310 7 7300450 to 7300917 467 CpG island CpG island 18310
Gm45415 7 7311309 to 7313382 2073 + unclassified gene predicted gene 45415
Vmn2r30 7 7312069 to 7337493 25424 - protein coding gene vomeronasal 2, receptor 30
Gm45783 7 7334149 to 7374573 40424 - protein coding gene predicted gene 45783
Gm3912 7 7362898 to 7374624 11726 - pseudogene predicted gene 3912
Vmn2r31 7 7383985 to 7399627 15642 - protein coding gene vomeronasal 2, receptor 31
Vmn2r-ps36 7 7417670 to 7441299 23629 - pseudogene vomeronasal 2, receptor, pseudogene 36
Vmn2r32 7 7463969 to 7479973 16004 - protein coding gene vomeronasal 2, receptor 32
Gm3563 7 7493963 to 7506878 12915 - pseudogene predicted gene 3563
Gm6842 7 7534575 to 7534964 389 - pseudogene predicted gene 6842
Vmn2r33 7 7550967 to 7566786 15819 - protein coding gene vomeronasal 2, receptor 33
Gm7648 7 7585304 to 7596433 11129 - pseudogene predicted gene 7648
Gm7651 7 7608627 to 7614771 6144 - pseudogene predicted gene 7651
Vmn2r-ps37 7 7642172 to 7645360 3188 - pseudogene vomeronasal 2, receptor, pseudogene 37
Vmn2r34 7 7671829 to 7689398 17569 - protein coding gene vomeronasal 2, receptor 34
Vmn2r-ps38 7 7706858 to 7720205 13347 - pseudogene vomeronasal 2, receptor, pseudogene 38
Vmn2r-ps39 7 7754979 to 7756125 1146 - pseudogene vomeronasal 2, receptor, pseudogene 39
Vmn2r35 7 7786151 to 7819867 33716 - protein coding gene vomeronasal 2, receptor 35
Vmn2r-ps40 7 7842899 to 7858604 15705 - pseudogene vomeronasal 2, receptor, pseudogene 40
Vmn2r36 7 7876653 to 7902462 25809 - protein coding gene vomeronasal 2, receptor 36
Gm7230 7 7914685 to 7917327 2642 - pseudogene predicted gene 7230
Gm3978 7 7948288 to 7961572 13284 - pseudogene predicted gene 3978