Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:62310000-68490000

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568 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Tssr72747 7 62314608 to 62314612 4 - TSS region transcription start site region 72747
Gm32061 7 62337794 to 62423245 85451 - lincRNA gene predicted gene, 32061
Cpgi19179 7 62348169 to 62349239 1070 CpG island CpG island 19179
Ndn 7 62348277 to 62349928 1651 + protein coding gene necdin
Tssr66976 7 62348278 to 62348332 54 + TSS region transcription start site region 66976
Tssr66977 7 62348335 to 62348351 16 + TSS region transcription start site region 66977
Tssr66978 7 62349437 to 62349456 19 + TSS region transcription start site region 66978
Cpgi19180 7 62376942 to 62377463 521 CpG island CpG island 19180
Tssr66979 7 62376999 to 62377015 16 + TSS region transcription start site region 66979
Magel2 7 62377010 to 62381640 4630 + protein coding gene melanoma antigen, family L, 2
Cpgi19181 7 62377930 to 62378219 289 CpG island CpG island 19181
Cpgi19182 7 62406883 to 62407101 218 CpG island CpG island 19182
Tssr72748 7 62416173 to 62416193 20 - TSS region transcription start site region 72748
Tssr66980 7 62416477 to 62416487 10 + TSS region transcription start site region 66980
Mkrn3 7 62417593 to 62420139 2546 - protein coding gene makorin, ring finger protein, 3
Cpgi19183 7 62419030 to 62420289 1259 CpG island CpG island 19183
Tssr72749 7 62419433 to 62419455 22 - TSS region transcription start site region 72749
Tssr72750 7 62420142 to 62420157 15 - TSS region transcription start site region 72750
Tssr72751 7 62423246 to 62423255 9 - TSS region transcription start site region 72751
Tssr2281 7 62423268 to 62423292 24 - TSS region transcription start site region 2281
Tssr72752 7 62423309 to 62423319 10 - TSS region transcription start site region 72752
Tssr72753 7 62423397 to 62423406 9 - TSS region transcription start site region 72753
Tssr72754 7 62423419 to 62423426 7 - TSS region transcription start site region 72754
Peg12 7 62461871 to 62464510 2639 - protein coding gene paternally expressed 12
Tssr72755 7 62463272 to 62463276 4 - TSS region transcription start site region 72755
Cpgi19184 7 62463401 to 62464552 1151 CpG island CpG island 19184
Tssr72756 7 62464417 to 62464440 23 - TSS region transcription start site region 72756
Tssr72757 7 62464468 to 62464477 9 - TSS region transcription start site region 72757
Tssr72758 7 62464484 to 62464498 14 - TSS region transcription start site region 72758
Tssr72759 7 62464505 to 62464548 43 - TSS region transcription start site region 72759
Tssr72760 7 62464552 to 62464573 21 - TSS region transcription start site region 72760
Atp5l-ps1 7 62476306 to 62476617 311 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1
Vmn2r-ps61 7 62577320 to 62578198 878 - pseudogene vomeronasal 2, receptor, pseudogene 61
V125Dq5 7 62600000 to 62600000 0 QTL vitamin D active form serum level QTL 5
Gm22494 7 62611657 to 62611784 127 + snoRNA gene predicted gene, 22494
Gm46026 7 62658507 to 62662189 3682 + pseudogene predicted gene, 46026
Gm9445 7 62683402 to 62684686 1284 - pseudogene predicted gene 9445
Tbthq1 7 62700000 to 68100000 5400000 QTL trabecular bone thickness QTL 1
Gm5333 7 62751230 to 62752121 891 - pseudogene predicted gene 5333
A26c2 7 62778423 to 62823673 45250 - protein coding gene ANKRD26-like family C, member 2
Gm32111 7 62782245 to 62783090 845 + pseudogene predicted gene, 32111
Tssr72761 7 62823689 to 62823715 26 - TSS region transcription start site region 72761
Tssr72762 7 62823738 to 62823747 9 - TSS region transcription start site region 72762
Chrna7 7 63098692 to 63212526 113834 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 7
Tssr2282 7 63127129 to 63127132 3 + TSS region transcription start site region 2282
Gm44741 7 63134164 to 63136290 2126 - unclassified gene predicted gene 44741
D7Mit176 7 63211190 to 63211340 150 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 176
Cpgi19185 7 63211803 to 63212942 1139 CpG island CpG island 19185
Tssr72763 7 63212514 to 63212531 17 - TSS region transcription start site region 72763
Tssr72764 7 63212542 to 63212570 28 - TSS region transcription start site region 72764
4930554H23Rik 7 63344692 to 63444529 99837 - lincRNA gene RIKEN cDNA 4930554H23 gene
Cpgi19186 7 63444213 to 63445474 1261 CpG island CpG island 19186
Tssr66981 7 63444741 to 63444762 21 + TSS region transcription start site region 66981
Otud7a 7 63444751 to 63759028 314277 + protein coding gene OTU domain containing 7A
Tssr66982 7 63444826 to 63444871 45 + TSS region transcription start site region 66982
Tssr66983 7 63452965 to 63452967 2 + TSS region transcription start site region 66983
Gm5898 7 63542479 to 63544549 2070 + pseudogene predicted gene 5898
Gm22228 7 63585922 to 63586022 100 + snRNA gene predicted gene, 22228
Gm3307 7 63606019 to 63606647 628 + pseudogene predicted gene 3307
D7Mit374 7 63686162 to 63686308 146 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology-374
Gm18804 7 63736979 to 63737489 510 - pseudogene predicted gene, 18804
Cpgi19187 7 63754750 to 63755515 765 CpG island CpG island 19187
Cpgi19188 7 63757248 to 63759496 2248 CpG island CpG island 19188
Gm44718 7 63765874 to 63766232 358 + lincRNA gene predicted gene 44718
Gm7482 7 63810826 to 63811330 504 - pseudogene predicted gene 7482
Gm39023 7 63823239 to 63852688 29449 - lncRNA gene predicted gene, 39023
Gm44720 7 63826978 to 63827237 259 + pseudogene predicted gene 44720
Cpgi19189 7 63858623 to 63858903 280 CpG island CpG island 19189
Cpgi19190 7 63866698 to 63866868 170 CpG island CpG island 19190
Gm32345 7 63873058 to 63876967 3909 - lncRNA gene predicted gene, 32345
Tssr2283 7 63875734 to 63875736 2 + TSS region transcription start site region 2283
Klf13 7 63886351 to 63938915 52564 - protein coding gene Kruppel-like factor 13
Tssr72765 7 63887645 to 63887649 4 - TSS region transcription start site region 72765
Tssr2284 7 63889100 to 63889116 16 - TSS region transcription start site region 2284
Tssr72766 7 63891424 to 63891529 105 - TSS region transcription start site region 72766
Cpgi19191 7 63891446 to 63891985 539 CpG island CpG island 19191
Tssr66984 7 63896379 to 63896392 13 + TSS region transcription start site region 66984
Tssr66985 7 63896477 to 63896499 22 + TSS region transcription start site region 66985
Tssr2285 7 63896502 to 63896514 12 + TSS region transcription start site region 2285
Gm27252 7 63896533 to 63899698 3165 + lncRNA gene predicted gene 27252
Cpgi19192 7 63896806 to 63897280 474 CpG island CpG island 19192
Tssr66986 7 63897396 to 63897425 29 + TSS region transcription start site region 66986
Gm45987 7 63901722 to 63909189 7467 - lncRNA gene predicted gene, 45987
Tssr66987 7 63905470 to 63905483 13 + TSS region transcription start site region 66987
Tssr72767 7 63908587 to 63908610 23 - TSS region transcription start site region 72767
E030018B13Rik 7 63916857 to 63920539 3682 + protein coding gene RIKEN cDNA E030018B13 gene
Tssr66988 7 63916880 to 63916916 36 + TSS region transcription start site region 66988
Tssr66989 7 63917241 to 63917248 7 + TSS region transcription start site region 66989
Tssr72768 7 63918971 to 63918978 7 - TSS region transcription start site region 72768
Tssr72769 7 63923414 to 63923418 4 - TSS region transcription start site region 72769
Tssr72770 7 63929350 to 63929354 4 - TSS region transcription start site region 72770
Cpgi19193 7 63936279 to 63936522 243 CpG island CpG island 19193
Tssr72771 7 63936309 to 63936342 33 - TSS region transcription start site region 72771
Tssr66990 7 63936626 to 63936636 10 + TSS region transcription start site region 66990
Tssr66991 7 63936685 to 63936695 10 + TSS region transcription start site region 66991
Cpgi19194 7 63936937 to 63939924 2987 CpG island CpG island 19194
Tssr72772 7 63937239 to 63937245 6 - TSS region transcription start site region 72772
Tssr72773 7 63937684 to 63937711 27 - TSS region transcription start site region 72773
Tssr66992 7 63937771 to 63937811 40 + TSS region transcription start site region 66992
Tssr72774 7 63938364 to 63938378 14 - TSS region transcription start site region 72774
Tssr72775 7 63938542 to 63938632 90 - TSS region transcription start site region 72775
Tssr2286 7 63938797 to 63938807 10 - TSS region transcription start site region 2286
Tssr72776 7 63938843 to 63938856 13 - TSS region transcription start site region 72776
Tssr72777 7 63938862 to 63938933 71 - TSS region transcription start site region 72777
Tssr72778 7 63938990 to 63939046 56 - TSS region transcription start site region 72778
Tssr66993 7 63939220 to 63939275 55 + TSS region transcription start site region 66993
Tssr66994 7 63939319 to 63939345 26 + TSS region transcription start site region 66994
Tssr72779 7 63939688 to 63939707 19 - TSS region transcription start site region 72779
Tssr72780 7 63939710 to 63939724 14 - TSS region transcription start site region 72780
Gm44627 7 63948678 to 63950208 1530 + unclassified gene predicted gene 44627
Gm39024 7 63956388 to 63959355 2967 + lncRNA gene predicted gene, 39024
Gm45052 7 63962240 to 63967744 5504 + lincRNA gene predicted gene 45052
Tssr72781 7 63999223 to 63999228 5 - TSS region transcription start site region 72781
Tssr72782 7 64001774 to 64001788 14 - TSS region transcription start site region 72782
Tssr66995 7 64001873 to 64001887 14 + TSS region transcription start site region 66995
Gm32633 7 64001885 to 64020959 19074 + lincRNA gene predicted gene, 32633
Tssr66996 7 64001898 to 64001924 26 + TSS region transcription start site region 66996
Gm45054 7 64034246 to 64040826 6580 - lincRNA gene predicted gene 45054
Cpgi19195 7 64048600 to 64049029 429 CpG island CpG island 19195
D7Mit316 7 64051451 to 64051574 123 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 316
Tssr72783 7 64052585 to 64052606 21 - TSS region transcription start site region 72783
Gm32902 7 64057290 to 64057807 517 - lncRNA gene predicted gene, 32902
Gm20670 7 64057602 to 64062958 5356 + lincRNA gene predicted gene 20670
Tssr72784 7 64058678 to 64058720 42 - TSS region transcription start site region 72784
D7Mit89 7 64061378 to 64061522 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 89
Cpgi19196 7 64065649 to 64065844 195 CpG island CpG island 19196
Gm45988 7 64130874 to 64134371 3497 + protein coding gene predicted gene, 45988
Trpm1 7 64153835 to 64269772 115937 + protein coding gene transient receptor potential cation channel, subfamily M, member 1
Tssr66997 7 64153841 to 64153851 10 + TSS region transcription start site region 66997
Tssr66998 7 64153862 to 64153865 3 + TSS region transcription start site region 66998
Tssr66999 7 64153916 to 64153923 7 + TSS region transcription start site region 66999
Tssr67000 7 64153942 to 64153949 7 + TSS region transcription start site region 67000
Tssr67001 7 64158953 to 64158961 8 + TSS region transcription start site region 67001
Tssr67002 7 64185406 to 64185422 16 + TSS region transcription start site region 67002
Tssr67003 7 64185495 to 64185506 11 + TSS region transcription start site region 67003
Tssr67004 7 64185537 to 64185560 23 + TSS region transcription start site region 67004
Cpgi19197 7 64201848 to 64202066 218 CpG island CpG island 19197
Gm44722 7 64202089 to 64202524 435 - unclassified gene predicted gene 44722
Mir211 7 64205806 to 64205911 105 + miRNA gene microRNA 211
Tssr67005 7 64205889 to 64205892 3 + TSS region transcription start site region 67005
Gm44719 7 64213190 to 64213338 148 + unclassified gene predicted gene 44719
Tssr67006 7 64226579 to 64226584 5 + TSS region transcription start site region 67006
Cpgi19198 7 64226746 to 64226899 153 CpG island CpG island 19198
Mir6416 7 64249983 to 64250099 116 - miRNA gene microRNA 6416
Cpgi19199 7 64268077 to 64268900 823 CpG island CpG island 19199
Gm44765 7 64283800 to 64284400 600 + unclassified gene predicted gene 44765
Gm45212 7 64284808 to 64288210 3402 - unclassified gene predicted gene 45212
Cpgi19200 7 64287255 to 64288201 946 CpG island CpG island 19200
Tssr67007 7 64287469 to 64287503 34 + TSS region transcription start site region 67007
Tssr72785 7 64287554 to 64287564 10 - TSS region transcription start site region 72785
Tssr67008 7 64287653 to 64287662 9 + TSS region transcription start site region 67008
Tssr67009 7 64287665 to 64287676 11 + TSS region transcription start site region 67009
Mtmr10 7 64287670 to 64340806 53136 + protein coding gene myotubularin related protein 10
Tssr67010 7 64287677 to 64287715 38 + TSS region transcription start site region 67010
Tssr67011 7 64287728 to 64287749 21 + TSS region transcription start site region 67011
Gm20457 7 64337550 to 64345964 8414 - antisense lncRNA gene predicted gene 20457
Tssr72786 7 64345394 to 64345428 34 - TSS region transcription start site region 72786
Fan1 7 64346758 to 64374095 27337 - protein coding gene FANCD2/FANCI-associated nuclease 1
Gm17930 7 64356778 to 64357477 699 - pseudogene predicted gene, 17930
Tssr72787 7 64373595 to 64373599 4 - TSS region transcription start site region 72787
Cpgi19201 7 64373824 to 64374243 419 CpG island CpG island 19201
Tssr72788 7 64374026 to 64374069 43 - TSS region transcription start site region 72788
Tssr72789 7 64374071 to 64374109 38 - TSS region transcription start site region 72789
Mphosph10 7 64376541 to 64392236 15695 - protein coding gene M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)
Cpgi19202 7 64391940 to 64393049 1109 CpG island CpG island 19202
Tssr72790 7 64392196 to 64392205 9 - TSS region transcription start site region 72790
Tssr72791 7 64392214 to 64392259 45 - TSS region transcription start site region 72791
Mcee 7 64392612 to 64412121 19509 + protein coding gene methylmalonyl CoA epimerase
Tssr67012 7 64392720 to 64392731 11 + TSS region transcription start site region 67012
Tssr67013 7 64392736 to 64392763 27 + TSS region transcription start site region 67013
Tssr67014 7 64392766 to 64392790 24 + TSS region transcription start site region 67014
Tssr67015 7 64439603 to 64439604 1 + TSS region transcription start site region 67015
Cpgi19203 7 64501110 to 64502881 1771 CpG island CpG island 19203
Tssr67016 7 64501622 to 64501649 27 + TSS region transcription start site region 67016
Tssr67017 7 64501650 to 64501683 33 + TSS region transcription start site region 67017
Tssr67018 7 64501687 to 64501702 15 + TSS region transcription start site region 67018
Apba2 7 64501706 to 64753878 252172 + protein coding gene amyloid beta (A4) precursor protein-binding, family A, member 2
Tssr67019 7 64501727 to 64501738 11 + TSS region transcription start site region 67019
Tssr67020 7 64502039 to 64502048 9 + TSS region transcription start site region 67020
Tssr67021 7 64502061 to 64502072 11 + TSS region transcription start site region 67021
Tssr67022 7 64502076 to 64502085 9 + TSS region transcription start site region 67022
Tssr67023 7 64502090 to 64502155 65 + TSS region transcription start site region 67023
Tssr67024 7 64502157 to 64502176 19 + TSS region transcription start site region 67024
Tssr67025 7 64502190 to 64502205 15 + TSS region transcription start site region 67025
Tssr67026 7 64505360 to 64505364 4 + TSS region transcription start site region 67026
Tssr67027 7 64511784 to 64511791 7 + TSS region transcription start site region 67027
Gm45082 7 64515311 to 64515911 600 + unclassified gene predicted gene 45082
Gm44721 7 64529425 to 64529896 471 + unclassified gene predicted gene 44721
D7Mit298 7 64565835 to 64565941 106 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 298
Tssr67028 7 64753277 to 64753293 16 + TSS region transcription start site region 67028
Tssr67029 7 64754074 to 64754085 11 + TSS region transcription start site region 67029
Tssr67030 7 64754109 to 64754120 11 + TSS region transcription start site region 67030
Tssr67031 7 64754420 to 64754424 4 + TSS region transcription start site region 67031
Fam189a1 7 64756091 to 65156564 400473 - protein coding gene family with sequence similarity 189, member A1
D7Mit275 7 64821733 to 64821855 122 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 275
Cpgi19204 7 64840070 to 64840366 296 CpG island CpG island 19204
D7Jcs22 7 64840473 to 64840742 269 DNA segment DNA segment, Chr 7, John C. Schimenti 22
Nsmce3 7 64871650 to 64873040 1390 - protein coding gene NSE3 homolog, SMC5-SMC6 complex component