Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:59807366-63677425

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210 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Del(7Ube3a-Snrpn)1Alb 7 59228750 to 60140219 911469 complex/cluster/region Deletion, Chr 7, Beaudet 1
Gm26433 7 59859214 to 59859307 93 - snoRNA gene predicted gene, 26433
Snord116l17 7 59861731 to 59861824 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 17
Gm25615 7 59864240 to 59864333 93 - snoRNA gene predicted gene, 25615
Snord116l16 7 59866788 to 59866881 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 16
Snord116l15 7 59869330 to 59869423 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 15
Snord116l14 7 59871864 to 59871957 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 14
Snord116l13 7 59874380 to 59874473 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 13
Snord116l2 7 59876935 to 59877024 89 - snoRNA gene small nucleolar RNA, C/D box 116-like 2
Snord116l8 7 59879459 to 59879552 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 8
Snord116l7 7 59881989 to 59882082 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 7
Snord116l6 7 59884499 to 59884592 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 6
Snord116l5 7 59887057 to 59887150 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 5
Snord116l4 7 59889593 to 59889686 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 4
Snord116l3 7 59892111 to 59892204 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 3
Snord116l1 7 59894622 to 59894711 89 - snoRNA gene small nucleolar RNA, C/D box 116-like 1
Snord116l9 7 59897161 to 59897254 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 9
Snord116l10 7 59899687 to 59899780 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 10
Snord116l11 7 59902213 to 59902306 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 11
Snord116l12 7 59904755 to 59904848 93 - snoRNA gene small nucleolar RNA, C/D box 116-like 12
Tssr72690 7 59922606 to 59922624 18 - TSS region transcription start site region 72690
Gm22373 7 59923034 to 59923122 88 - snoRNA gene predicted gene, 22373
Tssr72691 7 59930800 to 59930811 11 - TSS region transcription start site region 72691
Tssr72692 7 59930828 to 59930840 12 - TSS region transcription start site region 72692
Tssr72693 7 59961999 to 59962014 15 - TSS region transcription start site region 72693
Snhg14 7 59969577 to 59974431 4854 - lncRNA gene small nucleolar RNA host gene 14
Gm38393 7 59974149 to 60005064 30915 - protein coding gene predicted gene, 38393
Tssr72694 7 59976554 to 59976565 11 - TSS region transcription start site region 72694
Tssr72695 7 59977610 to 59977614 4 - TSS region transcription start site region 72695
Tssr72696 7 59977725 to 59977738 13 - TSS region transcription start site region 72696
Snord64 7 59978811 to 59978856 45 - snoRNA gene small nucleolar RNA, C/D box 64
Tssr72697 7 59978870 to 59978874 4 - TSS region transcription start site region 72697
Snord107 7 59980876 to 59980945 69 - snoRNA gene small nucleolar RNA, C/D box 107
Tssr72698 7 59980934 to 59980947 13 - TSS region transcription start site region 72698
Snrpn 7 59982502 to 60140219 157717 - protein coding gene small nuclear ribonucleoprotein N
Tssr72699 7 59983427 to 59983441 14 - TSS region transcription start site region 72699
Tssr72700 7 59984792 to 59984796 4 - TSS region transcription start site region 72700
Tssr72701 7 59988667 to 59988687 20 - TSS region transcription start site region 72701
Snurf 7 59995449 to 60005049 9600 - protein coding gene SNRPN upstream reading frame
Tssr72702 7 60002983 to 60002995 12 - TSS region transcription start site region 72702
Tssr72703 7 60003061 to 60003090 29 - TSS region transcription start site region 72703
Tssr72704 7 60003138 to 60003156 18 - TSS region transcription start site region 72704
Tssr72705 7 60003164 to 60003186 22 - TSS region transcription start site region 72705
Tssr66968 7 60003689 to 60003698 9 + TSS region transcription start site region 66968
Tssr72706 7 60003966 to 60003994 28 - TSS region transcription start site region 72706
Cpgi19176 7 60004308 to 60005228 920 CpG island CpG island 19176
Tssr66969 7 60004421 to 60004434 13 + TSS region transcription start site region 66969
Tssr72707 7 60005079 to 60005086 7 - TSS region transcription start site region 72707
Tssr72708 7 60005101 to 60005151 50 - TSS region transcription start site region 72708
Tssr72709 7 60005152 to 60005159 7 - TSS region transcription start site region 72709
Tssr2280 7 60005173 to 60005182 9 - TSS region transcription start site region 2280
Tssr66970 7 60037011 to 60037018 7 + TSS region transcription start site region 66970
Tssr66971 7 60037032 to 60037040 8 + TSS region transcription start site region 66971
Tssr72710 7 60046940 to 60046943 3 - TSS region transcription start site region 72710
Tssr72711 7 60047951 to 60047968 17 - TSS region transcription start site region 72711
Tssr72712 7 60047973 to 60047984 11 - TSS region transcription start site region 72712
Tssr72713 7 60097600 to 60097627 27 - TSS region transcription start site region 72713
Gm18908 7 60132202 to 60133684 1482 + pseudogene predicted gene, 18908
Tssr66972 7 60145438 to 60145446 8 + TSS region transcription start site region 66972
Cpgi19177 7 60155493 to 60156062 569 CpG island CpG island 19177
Gm7367 7 60155609 to 60156100 491 + pseudogene predicted pseudogene 7367
Tssr66973 7 60155682 to 60155722 40 + TSS region transcription start site region 66973
Tssr72714 7 60216836 to 60216858 22 - TSS region transcription start site region 72714
Gm18129 7 60272860 to 60280211 7351 + pseudogene predicted gene, 18129
Gm39021 7 60280103 to 60284618 4515 - lncRNA gene predicted gene, 39021
Gm30196 7 60293204 to 60293363 159 + pseudogene predicted gene, 30196
D7Mit249.2a 7 60303174 to 60303293 119 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 249.2a
D7Mit249.2b 7 60410345 to 60410465 120 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 249.2b
Gm42394 7 60437689 to 60444043 6354 - lncRNA gene predicted gene, 42394
Cpgi19178 7 60492462 to 60492654 192 CpG island CpG island 19178
Gm3198 7 60643891 to 60645785 1894 + pseudogene predicted gene 3198
Gm10297 7 60753363 to 60754004 641 - pseudogene predicted pseudogene 10297
Gm7394 7 60754882 to 60756779 1897 + pseudogene predicted gene 7394
Gm29729 7 60833596 to 60922937 89341 - lncRNA gene predicted gene, 29729
3110018A10Rik 7 60856526 to 60857259 733 unclassified gene RIKEN cDNA 3110018A10 gene
Gm44644 7 60915550 to 60922910 7360 - lincRNA gene predicted gene 44644
Gm44643 7 60922922 to 60961385 38463 - lincRNA gene predicted gene 44643
Gm30829 7 60923152 to 60961459 38307 - lncRNA gene predicted gene, 30829
Tssr72715 7 60939874 to 60939889 15 - TSS region transcription start site region 72715
A230006K03Rik 7 61010264 to 61090414 80150 - lincRNA gene RIKEN cDNA A230006K03 gene
Tssr72716 7 61055404 to 61055418 14 - TSS region transcription start site region 72716
Tssr66974 7 61115092 to 61115095 3 + TSS region transcription start site region 66974
Gm38451 7 61128039 to 61130684 2645 - lncRNA gene predicted gene, 38451
Gm31445 7 61197065 to 61311768 114703 - protein coding gene predicted gene, 31445
Tssr72717 7 61311640 to 61311655 15 - TSS region transcription start site region 72717
Tssr72718 7 61311662 to 61311667 5 - TSS region transcription start site region 72718
Tssr72719 7 61311679 to 61311690 11 - TSS region transcription start site region 72719
Gm31652 7 61329639 to 61336236 6597 - lncRNA gene predicted gene, 31652
Tssr72720 7 61528840 to 61528847 7 - TSS region transcription start site region 72720
B230209E15Rik 7 61529871 to 61615327 85456 - lincRNA gene RIKEN cDNA B230209E15 gene
Tssr72721 7 61529884 to 61529895 11 - TSS region transcription start site region 72721
Tssr72722 7 61529949 to 61529985 36 - TSS region transcription start site region 72722
Tssr72723 7 61530059 to 61530099 40 - TSS region transcription start site region 72723
Tssr72724 7 61530120 to 61530134 14 - TSS region transcription start site region 72724
Tssr72725 7 61530179 to 61530188 9 - TSS region transcription start site region 72725
Tssr72726 7 61546183 to 61546194 11 - TSS region transcription start site region 72726
Ube2nl 7 61549246 to 61549701 455 - pseudogene ubiquitin-conjugating enzyme E2N-like
Tssr72727 7 61563150 to 61563153 3 - TSS region transcription start site region 72727
Tssr72728 7 61576790 to 61576801 11 - TSS region transcription start site region 72728
Tssr72729 7 61595838 to 61595839 1 - TSS region transcription start site region 72729
Tssr72730 7 61604642 to 61604655 13 - TSS region transcription start site region 72730
Tssr72731 7 61615287 to 61615301 14 - TSS region transcription start site region 72731
Tssr72732 7 61615322 to 61615349 27 - TSS region transcription start site region 72732
Gm25533 7 61673829 to 61673907 78 - miRNA gene predicted gene, 25533
Gm23962 7 61681515 to 61681594 79 - miRNA gene predicted gene, 23962
Mir344d-1 7 61683124 to 61683192 68 - miRNA gene microRNA 344d-1
Mir344d-2 7 61685272 to 61685351 79 - miRNA gene microRNA 344d-2
A230057D06Rik 7 61705850 to 61927574 221724 - lincRNA gene RIKEN cDNA A230057D06 gene
Gm23490 7 61706591 to 61706670 79 - miRNA gene predicted gene, 23490
Gm22466 7 61708705 to 61708773 68 - miRNA gene predicted gene, 22466
Mir344d-3 7 61726249 to 61726328 79 - miRNA gene microRNA 344d-3
Tssr66975 7 61732753 to 61732762 9 + TSS region transcription start site region 66975
Gm23917 7 61733685 to 61733782 97 - miRNA gene predicted gene, 23917
Mir344e 7 61735537 to 61735602 65 - miRNA gene microRNA 344e
Mir344h-1 7 61739350 to 61739409 59 - miRNA gene microRNA 344h-1
Mir344h-2 7 61742366 to 61742425 59 - miRNA gene microRNA 344h-2
Gm23873 7 61750468 to 61750537 69 - miRNA gene predicted gene, 23873
6330444A18Rik 7 61751443 to 61753691 2248 unclassified gene RIKEN cDNA 6330444A18 gene
Mir344b 7 61790519 to 61790581 62 - miRNA gene microRNA 344b
Mir344c 7 61837311 to 61837402 91 - miRNA gene microRNA 344c
A230077L10Rik 7 61860405 to 61862957 2552 unclassified gene RIKEN cDNA A230077L10 gene
Mir344 7 61877770 to 61877864 94 - miRNA gene microRNA 344
Gm19032 7 61882972 to 61883563 591 + pseudogene predicted gene, 19032
Tssr72733 7 61888555 to 61888558 3 - TSS region transcription start site region 72733
Tssr72734 7 61916487 to 61916495 8 - TSS region transcription start site region 72734
Tssr72735 7 61934308 to 61934324 16 - TSS region transcription start site region 72735
Gm3257 7 61938237 to 61938911 674 + pseudogene predicted gene 3257
Mir344-2 7 61940027 to 61940106 79 - miRNA gene microRNA 344-2
Tssr72736 7 61943624 to 61943640 16 - TSS region transcription start site region 72736
A330076H08Rik 7 61943901 to 61982303 38402 - lncRNA gene RIKEN cDNA A330076H08 gene
Tssr72737 7 61982274 to 61982285 11 - TSS region transcription start site region 72737
Mir344g 7 61982289 to 61982359 70 - miRNA gene microRNA 344g
Tssr72738 7 61982290 to 61982306 16 - TSS region transcription start site region 72738
Tssr72739 7 61982348 to 61982364 16 - TSS region transcription start site region 72739
Tssr72740 7 61985901 to 61985911 10 - TSS region transcription start site region 72740
Tssr72741 7 61989649 to 61989653 4 - TSS region transcription start site region 72741
Tssr72742 7 61998900 to 61998917 17 - TSS region transcription start site region 72742
Gm23431 7 62036631 to 62036737 106 - snRNA gene predicted gene, 23431
Mir344f 7 62046181 to 62046248 67 - miRNA gene microRNA Mir344f
Tssr72743 7 62046244 to 62046250 6 - TSS region transcription start site region 72743
Gm18472 7 62055961 to 62056933 972 + pseudogene predicted gene, 18472
Gm24923 7 62078718 to 62078805 87 - miRNA gene predicted gene, 24923
Mir344i 7 62085223 to 62085310 87 - miRNA gene microRNA 344i
Tssr72744 7 62085256 to 62085283 27 - TSS region transcription start site region 72744
Gm9801 7 62193480 to 62279110 85630 - lincRNA gene predicted gene 9801
Tssr72745 7 62209483 to 62209494 11 - TSS region transcription start site region 72745
Tssr72746 7 62209499 to 62209546 47 - TSS region transcription start site region 72746
D7Mit276 7 62277634 to 62277744 110 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 276
Gm42395 7 62297387 to 62309919 12532 - lncRNA gene predicted gene, 42395
Tssr72747 7 62314608 to 62314612 4 - TSS region transcription start site region 72747
Gm32061 7 62337794 to 62423245 85451 - lincRNA gene predicted gene, 32061
Cpgi19179 7 62348169 to 62349239 1070 CpG island CpG island 19179
Ndn 7 62348277 to 62349928 1651 + protein coding gene necdin
Tssr66976 7 62348278 to 62348332 54 + TSS region transcription start site region 66976
Tssr66977 7 62348335 to 62348351 16 + TSS region transcription start site region 66977
Tssr66978 7 62349437 to 62349456 19 + TSS region transcription start site region 66978
Cpgi19180 7 62376942 to 62377463 521 CpG island CpG island 19180
Tssr66979 7 62376999 to 62377015 16 + TSS region transcription start site region 66979
Magel2 7 62377010 to 62381640 4630 + protein coding gene melanoma antigen, family L, 2
Cpgi19181 7 62377930 to 62378219 289 CpG island CpG island 19181
Cpgi19182 7 62406883 to 62407101 218 CpG island CpG island 19182
Tssr72748 7 62416173 to 62416193 20 - TSS region transcription start site region 72748
Tssr66980 7 62416477 to 62416487 10 + TSS region transcription start site region 66980
Mkrn3 7 62417593 to 62420139 2546 - protein coding gene makorin, ring finger protein, 3
Cpgi19183 7 62419030 to 62420289 1259 CpG island CpG island 19183
Tssr72749 7 62419433 to 62419455 22 - TSS region transcription start site region 72749
Tssr72750 7 62420142 to 62420157 15 - TSS region transcription start site region 72750
Tssr72751 7 62423246 to 62423255 9 - TSS region transcription start site region 72751
Tssr2281 7 62423268 to 62423292 24 - TSS region transcription start site region 2281
Tssr72752 7 62423309 to 62423319 10 - TSS region transcription start site region 72752
Tssr72753 7 62423397 to 62423406 9 - TSS region transcription start site region 72753
Tssr72754 7 62423419 to 62423426 7 - TSS region transcription start site region 72754
Peg12 7 62461871 to 62464510 2639 - protein coding gene paternally expressed 12
Tssr72755 7 62463272 to 62463276 4 - TSS region transcription start site region 72755
Cpgi19184 7 62463401 to 62464552 1151 CpG island CpG island 19184
Tssr72756 7 62464417 to 62464440 23 - TSS region transcription start site region 72756
Tssr72757 7 62464468 to 62464477 9 - TSS region transcription start site region 72757
Tssr72758 7 62464484 to 62464498 14 - TSS region transcription start site region 72758
Tssr72759 7 62464505 to 62464548 43 - TSS region transcription start site region 72759
Tssr72760 7 62464552 to 62464573 21 - TSS region transcription start site region 72760
Atp5l-ps1 7 62476306 to 62476617 311 + pseudogene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1
Vmn2r-ps61 7 62577320 to 62578198 878 - pseudogene vomeronasal 2, receptor, pseudogene 61
V125Dq5 7 62600000 to 62600000 0 QTL vitamin D active form serum level QTL 5
Gm22494 7 62611657 to 62611784 127 + snoRNA gene predicted gene, 22494
Gm46026 7 62658507 to 62662189 3682 + pseudogene predicted gene, 46026
Gm9445 7 62683402 to 62684686 1284 - pseudogene predicted gene 9445
Tbthq1 7 62700000 to 68100000 5400000 QTL trabecular bone thickness QTL 1
Gm5333 7 62751230 to 62752121 891 - pseudogene predicted gene 5333
A26c2 7 62778423 to 62823673 45250 - protein coding gene ANKRD26-like family C, member 2
Gm32111 7 62782245 to 62783090 845 + pseudogene predicted gene, 32111
Tssr72761 7 62823689 to 62823715 26 - TSS region transcription start site region 72761
Tssr72762 7 62823738 to 62823747 9 - TSS region transcription start site region 72762
Chrna7 7 63098692 to 63212526 113834 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 7
Tssr2282 7 63127129 to 63127132 3 + TSS region transcription start site region 2282
Gm44741 7 63134164 to 63136290 2126 - unclassified gene predicted gene 44741
D7Mit176 7 63211190 to 63211340 150 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 176
Cpgi19185 7 63211803 to 63212942 1139 CpG island CpG island 19185
Tssr72763 7 63212514 to 63212531 17 - TSS region transcription start site region 72763