Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:5890816-6192950

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20399 7 5905019 to 5905150 131 + pseudogene predicted gene 20399
Vmn1r-ps45 7 5929502 to 5930419 917 - pseudogene vomeronasal 1 receptor, pseudogene 45
Vmn1r-ps46 7 5966268 to 5967216 948 - pseudogene vomeronasal 1 receptor, pseudogene 46
Vmn1r65 7 6007750 to 6011010 3260 - protein coding gene vomeronasal 1 receptor 65
Tssr64431 7 6018978 to 6018979 1 + TSS region transcription start site region 64431
Gm5321 7 6019022 to 6019468 446 + pseudogene predicted gene 5321
Gm5052 7 6022661 to 6023168 507 - pseudogene predicted gene 5052
Gm38420 7 6038752 to 6039303 551 + pseudogene predicted gene, 38420
4933402C05Rik 7 6039107 to 6042555 3448 + lincRNA gene RIKEN cDNA 4933402C05 gene
Gm44733 7 6040816 to 6042950 2134 - lincRNA gene predicted gene 44733
Nlrp4c 7 6045161 to 6105149 59988 + protein coding gene NLR family, pyrin domain containing 4C
Tssr64432 7 6045168 to 6045197 29 + TSS region transcription start site region 64432
Gm18758 7 6116724 to 6124731 8007 + pseudogene predicted gene, 18758
Zfp787 7 6131491 to 6155997 24506 - protein coding gene zinc finger protein 787
Cpgi18282 7 6131980 to 6133147 1167 CpG island CpG island 18282
4933431C10Rik 7 6136430 to 6137695 1265 + unclassified gene RIKEN cDNA 4933431C10 gene
Cpgi18283 7 6154979 to 6156577 1598 CpG island CpG island 18283
Gm45841 7 6155287 to 6155450 163 - unclassified gene predicted gene 45841
Tssr64433 7 6155294 to 6155308 14 + TSS region transcription start site region 64433
Tssr64434 7 6155800 to 6155811 11 + TSS region transcription start site region 64434
Tssr70581 7 6155939 to 6155970 31 - TSS region transcription start site region 70581
Tssr70582 7 6156166 to 6156200 34 - TSS region transcription start site region 70582
Gm36371 7 6156516 to 6157618 1102 + bidirectional promoter lncRNA gene predicted gene, 36371
Tssr70583 7 6168591 to 6168602 11 - TSS region transcription start site region 70583
Cpgi18284 7 6171430 to 6173168 1738 CpG island CpG island 18284
Zfp444 7 6172464 to 6193104 20640 + protein coding gene zinc finger protein 444
Tssr64435 7 6172496 to 6172531 35 + TSS region transcription start site region 64435
Tssr64436 7 6172533 to 6172556 23 + TSS region transcription start site region 64436
Tssr70584 7 6173102 to 6173130 28 - TSS region transcription start site region 70584
Gm45148 7 6179975 to 6183561 3586 + sense intronic lncRNA gene predicted gene 45148
Cpgi18285 7 6183877 to 6184218 341 CpG island CpG island 18285
Cpgi18286 7 6189258 to 6190029 771 CpG island CpG island 18286
Tssr64437 7 6191224 to 6191228 4 + TSS region transcription start site region 64437